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Volumn 298, Issue 5597, 2002, Pages 1387-1395

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; DNA; ENZYMES; RNA;

EID: 0037112082     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1077464     Document Type: Article
Times cited : (290)

References (61)
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    • d was estimated to be S μM under the crystallization conditions.
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    • note
    • 2 and was heated to 75° for 5 min. The mixture was then slowly cooled to 20°C over a period of 2 hours. The transcription elongation complex was then assembled by mixing the annealed substrate with equimolar T7 RNAP.
  • 29
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    • note
    • 4, 6% polyethylene glycol 8000, 10 mM Mg acetate and 5 mM dithiothreitoL The crystaLs were flash-frozen in liquid propane before data collection. Selenomethionine- substituted T7 RNAP elongation complex was also prepared for multiwave-length anomalous dispersion experiments (55). Native data were collected at Brookhaven National Laboratory (BNL), beamline X25, and single-wavelength anomalous dispersive (SAD) data were collected at Advance Photon Source (APS), beamline ID19. Data were reduced with DENZO and Scalepack (56). The derivative and one native data set were in monoclinic form (p21), whereas the other native data set was in orthorhombic form (C221). Phases from molecular replacement using the COOH-terminal domain (residues 300 to 883) of the T7 RNAP initiation complex were used to locate SO Se sites. The phases from molecular replacement and Se SAD were then combined with program AMORE (57) and CNS (58). Experimental phases obtained from monoclinic data were used to refine against the orthorhombic data to yield the final atomic model, since this data set revealed more ordered downstream DNA.
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    • Otwinowski, Z.1    Minor, W.2
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    • note
    • Data were collected at two synchrotron sources for this work ID-19 at Argonne National Labs (APS) and X25 at National Synchrotron Light Source (NSLS). Use of the Argonne National Laboratory Structural Biology Center beamlines at the Advanced Photon Source was supported by the U.S. Department of Energy (DOE), Office of Biological and Environmental Research, under Contract No. W-31-109-ENG-38. Research carried out in part at the NSLS, BNL, was supported by the DOE, Division of Materials Sciences and Division of Chemical Sciences, under Contract No. DE-AC02-98CH10886. We thank M. Becker (X25) and A. Joachimiak (ID-19) for their support during beam[ine data collections; W. Kennedy, C. Joyce, and S. Kamtekar for many helpful discussions and critical reading of the manuscript; and D. Crothers for help with the thermodynamic calculations. The coordinates for the T7 RNAP elongation complex have been deposited in the PDB under accession code 1msw. Supported by NIH grant GMS7510 to T.A.S.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.