2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: Metal-ion and base sequence effects

Nucleic Acids Research

Volumn 26, Issue 16, 1998, Pages 3837-3844

  Stivers, James T ^a  

^a UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; DNA; DNA BASE; DOUBLE STRANDED DNA; FLUORESCENT DYE; MAGNESIUM CHLORIDE; METAL ION; URACIL DNA GLYCOSYLTRANSFERASE;

ARTICLE; DNA SEQUENCE; DNA STRUCTURE; FLUORESCENCE SPECTROSCOPY; PRIORITY JOURNAL;

2-AMINOPURINE; ACRYLAMIDE; ACRYLAMIDES; BASE SEQUENCE; BINDING SITES; CATIONS, DIVALENT; DNA; DNA GLYCOSYLASES; FLUORESCENT DYES; KINETICS; MAGNESIUM CHLORIDE; N-GLYCOSYL HYDROLASES; NUCLEIC ACID CONFORMATION; SPECTROMETRY, FLUORESCENCE; TEMPERATURE; URACIL-DNA GLYCOSIDASE;

EID: 0032529485     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.16.3837     Document Type: Article

References (40)

1. Friedberg,E.C. (1985) DNA Repair. W.H. Freeman, New York.
2. Lindahl,T. and Nyberg,B. (1972) Biochemistry, 11, 3610-3618.
3. Bailly,V. and Verly,W. (1989) Nucleic Acids Res., 17, 3617-3618.
4. Manoharan,M., Mazumder,A., Ransom.,S.C., Gerlt,J.A. and Bolton,P.H. (1988) J. Am. Chem. Soc., 110, 2690-2691.
5. Mazumder,A., Gerlt,J.A., Absalon,M.J., Stubbe,J., Cunningham,R.P., Withka,J. and Bolton,P.H. (1991) Biochemistry, 30, 1119-1126.
6. Demple,B. and Harrison,L. (1994) Annu. Rev. Biochem., 63, 915-948.
7. Cuniasse,Ph., Sowers,L.C., Eritja,R., Kaplan,B., Gooodman,M.F., Cognet,J.A.H., Lebret,M., Guschlbauer,W. and Fazakerly,G.V. (1987) Nucleic Acids Res., 15, 8003-8022.
8. Cuniasse,Ph., Fazakerly,G.V., Guschlbauer,W., Kaplan,B. and Sowers,L.C. (1990) J. Mol. Biol., 213, 303-314.
9. Kalnick,M.W., Chang,C.N., Grollman,A.P. and Patel,D.J. (1988) Biochemistry, 27, 924-931.
10. Kalnick,M.W., Norman,D.G., Zagorski,M.G., Swann,P.F. and Patel,D.J. (1989) Biochemistry, 28, 294-303.
11. Withka,J.M., Wilde,J.A. and Bolton,P.H. (1991) Biochemistry, 30, 9931-9940.
12. Singh,M.P., Hill,G.C., Péoc'h,D., Rayner,B., Imbach,J.-L. and Lown,J.W. (1994) Biochemistry, 33, 10271-10285.
13. Goljer,I., Kumar,S. and Bolton,P.H. (1995) J. Biol. Chem., 270, 22980-22987.
14. Coppel,Y., Berthet,N., Coulombeau,C., Coulombeau,C. Garcia,J. and Lhomme,J. (1997) Biochemistry, 36, 4817-4830.
15. Law,S.M., Eritja,R., Goodman,M.F. and Breslauer,K.J. (1996) Biochemistry, 35, 12329-12337.
16. Bloom,L.B., Otto,M.R., Eritja,R., Reha-Krantz,J-J., Goodman,M.F. and Beechem,J.M. (1994) Biochemistry, 33, 7576-7586.
17. Allan,B.W. and Reich,N.O. (1996) Biochemistry, 35, 14757-14762.
18. McCullough,A.K., Dodson,M.L., Scharer,O.D. and Lloyd,R.S. (1997) J. Biol. Chem., 212, 27210-27217.
19. Menger,M., Tuschl,T., Eckstein,F. and Porschke,D. (1996) Biochemistry, 35, 14710-14716.
20. Lindahl,T., Ljungquist,S., Siegert,W., Nyberg,B. and Sperens,B. (1977) J. Biol. Chem., 252, 3286-3294.
21. Fasman,G.D. (1975) Handbook of Biochemistry, Nucleic Acids, 3rd ed., Vol. 1. CRC Press, Boca Raton, FL.
22. Record,M.T., Anderson,C.F. and Lohman,T.M. (1978) Q. Rev. Biophys., 11, 103-178.
23. Simons,E.R. (1981) In Bell,J.E. (ed.), Spectroscopy in Biochemistry, Vol. I. CRC Press, Boca Raton, FL, pp. 84-91.
24. Guest,C.R., Hochstrasser,R.A., Sowers,L.C. and Millar,D.P. (1991) Biochemistry, 30, 3271-3279.
25. Evans,K., Xu,D.-G., Kim,Y.-S. and Norlund,T.M. (1992) J. Fluoresc., 2, 209-216.
26. Nordlund,T.M., Xu,D. and Evans,K.O. (1993) Biochemistry, 32, 12090-12095.
27. Xu,D., Evans,K.O. and Nordlund,T.M. (1994) Biochemistry, 33, 9592-9599.
28. Bell,J.E. (1981) In Bell,J.E. (ed.), Spectroscopy in Biochemistry, Vol. I. CRC Press, Boca Raton, FL, pp. 183-188.
29. Slupphaug,G., Mol,C.D., Kavli,B., Arvai,A.S., Krokan,H.E. and Tainer,J.A. (1996) Nature, 384, 87-92.
30. Fazakerly,G.V., Sowers,L.C., Eritja,R., Kaplan,B.E. and Goodman,M.F. (1987) Biochemistry, 26, 5641-5646.
31. Kalnick,M.W., Chang,C.N., Johnson,F., Grollman,A.P. and Patel,D.J. (1990) Biochemistry, 28, 3373-3383.
32. Kalnick,M.W., Norman,D.G., Zagorski,M.G., Swann,P.F. and Patel,D.J. (1990) J. Biol. Chem., 265, 636-647.
33. van den Hoogen,Y.T., van Beuzekom,A.A., van den Elst,H., van der Marel,G.A., van Boom,J.H. and Altona,C. (1988) Nucleic Acids Res., 16, 2971-2986.
34. Fagan,P.A., Fabrega,C., Eritja,R., Goodman,M.F. and Wemmer,D.E. (1996) Biochemistry, 35, 4026-4033.
35. Kollman,P.A., Weiner,P.K. and Dearing,A. (1981) Biopolymers, 20, 2583-2621.
36. Nordlund,T.M., Andersson,S., Nilsson,L., Rigler,R., Gräslund,A. and McLaughlin,L.W. (1989) Biochemistry, 28, 9095-9103.
37. Moe,J.G. and Russu,I.M. (1992) Biochemistry, 31, 8421-8428.
38. WU,P., Nordland,T.M., Gildea,B. and Mclaughlin,L.W. (1990) Biochemistry, 29, 6508-6514.
39. Millican,T.A., Mock,G.A., Chauncey,M.A., Patel,P.T., Eaton,M.A., Gunning,J., Cutbush,S.D., Neidele,S. and Mann,J. (1984) Nucleic Acids Res., 12, 7435-7453.
40. Takishita,M., Chang,C.-N., Johnson F., Will,S. and Grollman,A.P. (1987) J. Biol. Chem., 262, 10171-10179.