PGASO: A synthetic biology tool for engineering a cellulolytic yeast

Biotechnology for Biofuels

Volumn 5, Issue , 2012, Pages

  Chang, Jui Jen ^a,b   Ho, Cheng Yu ^c   Ho, Feng Ju ^a   Tsai, Tsung Yu ^a   Ke, Huei Mien ^a,c   Wang, Christine H T ^a   Chen, Hsin Liang ^a   Shih, Ming Che ^d   Huang, Chieh Chen ^c   Li, Wen Hsiung ^a,b,e  

^a BIODIVERSITY RESEARCH CENTER   (Taiwan)

^b GENOMICS RESEARCH CENTER   (Taiwan)

^c NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^d AGRICULTURAL BIOTECHNOLOGY RESEARCH CENTER   (Taiwan)

^e UNIVERSITY OF CHICAGO   (United States)

Author keywords

Bio ethanol; Cellulolytic enzymes; Consolidated bioprocess; Synthetic biology; Yeast

Indexed keywords

BIO-ETHANOLS; BIOPROCESSES; CELLOBIOSE; CELLULASE GENES; CELLULOLYTIC ENZYME; ENDOGLUCANASES; ETHANOL FERMENTATION; EXOGLUCANASE; GENE ASSEMBLY; GREEN FLUORESCENT PROTEIN; NEOMYCIN PHOSPHOTRANSFERASE; OVER-EXPRESSION; RECOMBINANT STRAINS; SINGLE-STEP; SOLE CARBON SOURCE; SYNTHETIC BIOLOGY; TRANSFORMANTS; TRANSFORMATION EFFICIENCY;

BAST FIBERS; BIOLOGY; CELLULOSIC ETHANOL; ENZYMES; ETHANOL; GENES; OLIGONUCLEOTIDES; SACCHARIFICATION;

YEAST;

BIOTECHNOLOGY; CELLULOSE; ENZYME; ETHANOL; FERMENTATION; GENE EXPRESSION; PROTEIN; YEAST;

FUNGI; SACCHAROMYCES CEREVISIAE;

EID: 84864219618     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/1754-6834-5-53     Document Type: Article

References (32)

1. Consolidated bioprocessing of cellulosic biomass: an update. Lynd LR, van Zyl WH, McBride JE, Laser M, CurrOpinBiotechnol 2005 16 577 583 (Pubitemid 41393839)
2. High level secretion of cellobiohydrolases bySaccharomyces cerevisiae. Ilmén M, den Haan R, Brevnova E, McBride J, Wiswall E, Froehlich A, Koivula A, Voutilainen SP, Siika-Aho M, la Grange DC, Thorngren N, Ahlgren S, Mellon M, Deleault K, Rajgarhia V, van Zyl WH, Penttilä M, Biotechnol Biofuels. 2011 4 30 10.1186/1754-6834-4-30 21910902
3. Direct ethanol production from cellulosic materials using a diploid strain ofSaccharomyces cerevisiaewith optimized cellulase expression. Yamada R, Taniguchi N, Tanaka T, Ogino C, Fukuda H, Kondo A, Biotechnol Biofuels 2011 4 8 10.1186/1754-6834-4-8 21496218
4. High-temperature ethanol fermentation and transformation with linear DNA in the thermotolerant yeastKluyveromycesmarxianusDMKU3-1042. Nonklang S, Abdel-Banat BM, Cha-aim K, Moonjai N, Hoshida H, Limtong S, Yamada M, Akada R, Appl Environ Microbiol 2008 74 7514 7521 10.1128/AEM.01854-08 18931291
5. The yeastKluyveromycesmarxianusand its biotechnological potential. Fonseca GG, Heinzle E, Wittmann C, Gombert AK, ApplMicrobiolBiotechnol 2008 79 339 354
6. Transformation ofKluyveromyceslactisby Electroporation. Sánchez M, Iglesias FJ, Santamaría C, Domínguez A, Appl Environ Microbiol 1993 59 2087 2092 16348986
7. Heterologous protein production in the yeastKluyveromyceslactis. van Ooyen AJ, Dekker P, Huang M, Olsthoorn MM, Jacobs DI, Colussi PA, Taron CH, FEMS Yeast Res 2006 6 381 392 10.1111/j.1567-1364.2006.00049.x 16630278
8. The univector plasmid-fusion system, a method for rapid construction of recombinant DNA without restriction enzymes. Liu Q, Li MZ, Leibham D, Cortez D, Elledge SJ, CurrBiol 1998 8 1300 1309 (Pubitemid 29006705)
9. PCR-induced (ligase-free) subcloning: a rapid reliable method to subclone polymerase chain reaction (PCR) products. Shuldiner AR, Scott LA, Roth J, Nucleic Acids Res 1920 1990 18
10. Ligation-independent cloning of PCR products (LIC-PCR). Aslanidis C, de Jong PJ, Nucleic Acids Res 1990 18 6069 6074 10.1093/nar/18.20.6069 2235490
11. DNA cloning using in vitro site-specific recombination. Hartley JL, Temple GF, Brasch MA, Genome Res 2000 10 1788 1795 10.1101/gr.143000 11076863
12. GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. Walhout AJ, Temple GF, Brasch MA, Hartley JL, Lorson MA, van den Heuvel S, Vidal M, Methods Enzymol 2000 328 575 592 11075367
13. Chain reaction cloning: a one-step method for directional ligation of multiple DNA fragments. Pachuk CJ, Samuel M, Zurawski JA, Snyder L, Phillips P, Satishchandran C, Gene 2000 243 19 25 10.1016/S0378-1119(99)00508-9 10675609 (Pubitemid 30079701)
14. One step assembly of multiple DNA fragments with a designed order and orientation inBacillus subtilisplasmid. Tsuge K, Matsui K, Itaya M, Nucleic Acids Res 2003 31 133 10.1093/nar/gng133 14576333
15. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Shao Z, Zhao H, Nucleic Acids Res 2009 37 16 10.1093/nar/gkn724 19074487
16. USER friendly DNA engineering and cloning method by uracil excision. Bitinaite J, Rubino M, Varma KH, Schildkraut I, Vaisvila R, Vaiskunaite R, Nucleic Acids Res 2007 35 1992 2002 10.1093/nar/gkm041 17341463 (Pubitemid 47061665)
17. MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules. Li MZ, Elledge SJ, Nat Genet 2005 37 311 319 10.1038/ng1505 15731760 (Pubitemid 41716260)
18. Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Li MZ, Elledge SJ, Nat Methods 2007 4 251 256 10.1038/nmeth1010 17293868 (Pubitemid 46358876)
19. Many paths to many clones: a comparative look at high-throughput cloning methods. Marsischky G, LaBaer J, Genome Res 2004 14 2020 2028 10.1101/gr.2528804 15489321 (Pubitemid 39440181)
20. Genome wide distribution of illegitimate recombination events inKluyveromyceslactis. Kegel A, Martinez P, Carter SD, Astrom SU, Nucleic Acids Res 2006 34 1633 1645 10.1093/nar/gkl064 16549875
21. Circular polymerase extension cloning of complex gene libraries and pathways. Quan J, Tian J, PLoS One 2009 4 6441 10.1371/journal.pone.0006441 19649325
22. One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome. Gibson DG, Benders GA, Axelrod KC, Zaveri J, Algire MA, Moodie M, Montague MG, Venter JC, Smith HO, Hutchison CA, ProcNatlAcadSci USA 2008 105 20404 20409 10.1073/pnas.0811011106
23. Smith HO: Enzymatic assembly of DNA molecules up to several hundred kilobases. Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA, Nat Methods 2009 6 343 345 10.1038/nmeth.1318 19363495
24. Transformation of yeast by a replicating hybrid plasmid. Beggs JD, Nature 1978 275 104 109 10.1038/275104a0 357984 (Pubitemid 9006932)
25. Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Gietz RD, Woods RA, Methods Enzymol 2002 350 87 96 12073338 (Pubitemid 34619485)
26. A high-frequency transformation system for the yeast Kluyveromyceslactis. Das S, Hollenberg CP, Curr Genet 1982 6 123 128 10.1007/BF00435211
27. Random and targeted gene integrations through the control of non-homologous end joining in the yeastKluyveromycesmarxianus. Abdel-Banat BM, Nonklang S, Hoshida H, Akada R, Yeast 2010 27 29 39 19894210
28. A highly efficient -glucosidase from the calf lumen fungusNeocallimastixpatriciarumW5. Chen HL, Lu MY, Chen YC, Chang JJ, Wang HT, Wang TY, Ruan SK, Wang TY, Hung KY, Cho HY, Ke HM, Lin WT, Shih MC, Li WH, Biotechnol Biofuels 2012 in press 22967479
29. Inhibitory Effects of Methylcellulose on Cellulose Degradation by Ruminococcusflavefaciens. Rasmussen MA, Hespell RB, White BA, Bothast RJ, Appl Environ Microbiol 1988 54 890 897 16347610
30. Construction of thermotolerant yeast expressing thermostablecellulase genes. Hong J, Wang Y, Kumagai H, Tamaki H, J Biotechnol 2007 130 114 123 10.1016/j.jbiotec.2007.03.008 17433483 (Pubitemid 46802862)
31. Direct ethanol production from cellulosic materials at high temperature using the thermotolerant yeastKluyveromycesmarxianusdisplaying cellulolytic enzymes. Yanase S, Hasunuma T, Yamada R, Tanaka T, Ogino C, Fukuda H, Kondo A, ApplMicrobiolBiotechnol 2010 88 381 388
32. Colorimetric method for determination of sugars and related substances. Dubois M, Gilles KA, Hamilton JK, Rebers PA, Smith F, Anal Chem 1956 28 350 356 10.1021/ac60111a017