메뉴 건너뛰기




Volumn 27, Issue 1, 2010, Pages 29-39

Random and targeted gene integrations through the control of non-homologous end joining in the yeast Kluyveromyces marxianus

Author keywords

Gene integration; Kluyveromyces marxianus; KU70; Linear DNA; Non homologous end joining

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA RECOMBINATION; GENE DELETION; GENE REPLICATION; GENE TARGETING; GENETIC TRANSFORMATION; KLUYVEROMYCES; KLUYVEROMYCES MARXIANUS; NONHUMAN; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

EID: 73449096416     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1729     Document Type: Article
Times cited : (84)

References (44)
  • 1
    • 0037196945 scopus 로고    scopus 로고
    • Sets of integrating plasmids and gene disruption cassettes containing improved counter-selection markers designed for repeated use in budding yeast
    • Akada R, Hirosawa I, Kawahata M, et al. 2002. Sets of integrating plasmids and gene disruption cassettes containing improved counter-selection markers designed for repeated use in budding yeast. Yeast 19: 393-402.
    • (2002) Yeast , vol.19 , pp. 393-402
    • Akada, R.1    Hirosawa, I.2    Kawahata, M.3
  • 2
    • 0034494034 scopus 로고    scopus 로고
    • A simple and rapid method for lithium acetate-mediated transformation of Kluyveromyces marxianus cells
    • Antunes DF, de Souza CG, de Morais MA. 2000. A simple and rapid method for lithium acetate-mediated transformation of Kluyveromyces marxianus cells. World J Microbiol Biotechnol 16: 653-654.
    • (2000) World J Microbiol Biotechnol , vol.16 , pp. 653-654
    • Antunes, D.F.1    de Souza, C.G.2    de Morais, M.A.3
  • 3
    • 0003855149 scopus 로고    scopus 로고
    • Ausubel FM, Brent R, Kingston RE, et al, eds, Wiley: New York
    • Ausubel FM, Brent R, Kingston RE, et al. (eds.). 1999. Short Protocols in Molecular Biology. Wiley: New York.
    • (1999) Short Protocols in Molecular Biology
  • 4
    • 0031818471 scopus 로고    scopus 로고
    • Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe
    • Bahler J, Wu J, Longtime MS, et al. 1998. Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14: 943-951.
    • (1998) Yeast , vol.14 , pp. 943-951
    • Bahler, J.1    Wu, J.2    Longtime, M.S.3
  • 5
    • 0032423438 scopus 로고    scopus 로고
    • Ethanol production at elevated temperatures and alcohol concentrations: Part I. Yeasts in general
    • Banat IM, Nigam P, Singh D, et al. 1998. Ethanol production at elevated temperatures and alcohol concentrations: Part I. Yeasts in general. World J Microbiol Biotechnol 14: 809-821.
    • (1998) World J Microbiol Biotechnol , vol.14 , pp. 809-821
    • Banat, I.M.1    Nigam, P.2    Singh, D.3
  • 6
    • 0027237665 scopus 로고
    • A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae
    • Baudin A, Ozier-Kalogeropoulos O, Denouel A, et al. 1993. A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucleic Acids Res 21: 3329-3330.
    • (1993) Nucleic Acids Res , vol.21 , pp. 3329-3330
    • Baudin, A.1    Ozier-Kalogeropoulos, O.2    Denouel, A.3
  • 7
    • 0019473684 scopus 로고
    • High-frequency transformation of the fission yeast Schizosaccharomyces pombe
    • Beach D, Nurse P. 1981. High-frequency transformation of the fission yeast Schizosaccharomyces pombe. Nature 290: 140-142.
    • (1981) Nature , vol.290 , pp. 140-142
    • Beach, D.1    Nurse, P.2
  • 8
    • 0018180547 scopus 로고
    • Transformation of yeast by a replicating hybrid plasmid
    • Beggs JD. 1978. Transformation of yeast by a replicating hybrid plasmid. Nature 275: 104-109.
    • (1978) Nature , vol.275 , pp. 104-109
    • Beggs, J.D.1
  • 9
    • 67749147467 scopus 로고    scopus 로고
    • Increased gene targeting in Ku70 and Xrcc4 transiently deficient human somatic cells
    • Bertolini LR, Bertolini M, Maga EA, et al. 2008. Increased gene targeting in Ku70 and Xrcc4 transiently deficient human somatic cells. Mol Biotechnol 41: 106-114.
    • (2008) Mol Biotechnol , vol.41 , pp. 106-114
    • Bertolini, L.R.1    Bertolini, M.2    Maga, E.A.3
  • 10
    • 0032579440 scopus 로고    scopus 로고
    • Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
    • Brachmann CB, Davies A, Cost GJ, et al. 1998. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115-132.
    • (1998) Yeast , vol.14 , pp. 115-132
    • Brachmann, C.B.1    Davies, A.2    Cost, G.J.3
  • 11
    • 60649116419 scopus 로고    scopus 로고
    • Reliable fusion PCR mediated by GC-rich overlap sequences
    • Cha-aim K, Fukunaga T, Hoshida H, Akada R. 2009. Reliable fusion PCR mediated by GC-rich overlap sequences. Gene 434: 43-49.
    • (2009) Gene , vol.434 , pp. 43-49
    • Cha-aim, K.1    Fukunaga, T.2    Hoshida, H.3    Akada, R.4
  • 12
    • 0026599048 scopus 로고
    • One-step transformation of yeast in stationary phase
    • Chen DC, Yang BC, Kuo TT. 1992. One-step transformation of yeast in stationary phase. Curr Genet 21: 83-84.
    • (1992) Curr Genet , vol.21 , pp. 83-84
    • Chen, D.C.1    Yang, B.C.2    Kuo, T.T.3
  • 13
    • 0024708913 scopus 로고
    • The host range of the pKD1-derived plasmids in yeast
    • Chen XJ, Bianchi MM, Suda K, Fukuhara H. 1989. The host range of the pKD1-derived plasmids in yeast. Curr Genet 16: 95-98.
    • (1989) Curr Genet , vol.16 , pp. 95-98
    • Chen, X.J.1    Bianchi, M.M.2    Suda, K.3    Fukuhara, H.4
  • 14
    • 0000375573 scopus 로고
    • A high-frequency transformation system for the yeast Kluyveromyces lactis
    • Das S, Hollenberg CP. 1982. A high-frequency transformation system for the yeast Kluyveromyces lactis. Curr Genet 6: 123-128.
    • (1982) Curr Genet , vol.6 , pp. 123-128
    • Das, S.1    Hollenberg, C.P.2
  • 15
    • 0021164978 scopus 로고
    • Transformation of Kluyveromyces fragilis
    • Das S, Kellermann E, Hollenberg CP. 1984. Transformation of Kluyveromyces fragilis. J Bacteriol 158: 1165-1167.
    • (1984) J Bacteriol , vol.158 , pp. 1165-1167
    • Das, S.1    Kellermann, E.2    Hollenberg, C.P.3
  • 17
    • 33747164466 scopus 로고    scopus 로고
    • Insertion mutagenesis of the yeast Candida famata (Debaryomyces hansenii ) by random integration of linear DNA fragments
    • Dmytruk KV, Voronovsky AY, Sibirny AA. 2006. Insertion mutagenesis of the yeast Candida famata (Debaryomyces hansenii ) by random integration of linear DNA fragments. Curr Genet 50: 183-191.
    • (2006) Curr Genet , vol.50 , pp. 183-191
    • Dmytruk, K.V.1    Voronovsky, A.Y.2    Sibirny, A.A.3
  • 19
    • 34347206860 scopus 로고    scopus 로고
    • High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
    • Gietz RD, Schiestl RH. 2007. High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat Protoc 2: 31-34.
    • (2007) Nat Protoc , vol.2 , pp. 31-34
    • Gietz, R.D.1    Schiestl, R.H.2
  • 20
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method
    • Gietz RD, Woods RA. 2002. Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol 350: 87-96.
    • (2002) Methods Enzymol , vol.350 , pp. 87-96
    • Gietz, R.D.1    Woods, R.A.2
  • 21
    • 12244252270 scopus 로고    scopus 로고
    • Isolation of auxotrophic mutants of diploid industrial yeast strains after UV mutagenesis
    • Hashimoto S, Ogura M, Aritomi K, et al. 2005. Isolation of auxotrophic mutants of diploid industrial yeast strains after UV mutagenesis. App Environ Microbiol 71: 312-319.
    • (2005) App Environ Microbiol , vol.71 , pp. 312-319
    • Hashimoto, S.1    Ogura, M.2    Aritomi, K.3
  • 23
    • 0027214308 scopus 로고
    • High efficiency transformation of Kluyveromyces marxianus by a replicative plasmid
    • Iborra F. 1993. High efficiency transformation of Kluyveromyces marxianus by a replicative plasmid. Curr Genet 24: 181-183.
    • (1993) Curr Genet , vol.24 , pp. 181-183
    • Iborra, F.1
  • 24
    • 0020529962 scopus 로고
    • Transformation of intact yeast cells treated with alkali cations
    • Ito H, Fukuda Y, Murata K, Kimura A. 1983. Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153: 163-168.
    • (1983) J Bacteriol , vol.153 , pp. 163-168
    • Ito, H.1    Fukuda, Y.2    Murata, K.3    Kimura, A.4
  • 25
    • 33645464331 scopus 로고    scopus 로고
    • Genome wide distribution of illegitimate recombination events in Kluyveromyces lactis
    • Kegel A, Martinez P, Carter SD, Astrom SU. 2006. Genome wide distribution of illegitimate recombination events in Kluyveromyces lactis. Nucleic Acids Res 34: 1633-1645.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1633-1645
    • Kegel, A.1    Martinez, P.2    Carter, S.D.3    Astrom, S.U.4
  • 26
    • 4043134527 scopus 로고    scopus 로고
    • Efficient gene targeting in Kluyveromyces lactis
    • Kooistra R, Hooykaas PJJ, Steensma HY. 2004. Efficient gene targeting in Kluyveromyces lactis. Yeast 21: 781-792.
    • (2004) Yeast , vol.21 , pp. 781-792
    • Kooistra, R.1    Hooykaas, P.J.J.2    Steensma, H.Y.3
  • 27
    • 34548021881 scopus 로고    scopus 로고
    • Production of fuel ethanol at high temperature from sugar cane juice by a newly isolated Kluyveromyces marxianus
    • Limtong S, Stringiew C, Yongmanitchai W. 2007. Production of fuel ethanol at high temperature from sugar cane juice by a newly isolated Kluyveromyces marxianus. Bioresour Technol 98: 3367-3374.
    • (2007) Bioresour Technol , vol.98 , pp. 3367-3374
    • Limtong, S.1    Stringiew, C.2    Yongmanitchai, W.3
  • 28
    • 49349108592 scopus 로고    scopus 로고
    • Nonhomologous end joining and homologous recombination DNA repair pathways in integration mutagenesis in xylose-fermenting yeast Pichia stipitis
    • Maassen N, Freese S, Schruff B, et al. 2008. Nonhomologous end joining and homologous recombination DNA repair pathways in integration mutagenesis in xylose-fermenting yeast Pichia stipitis. FEMS Yeast Res 8: 735-743.
    • (2008) FEMS Yeast Res , vol.8 , pp. 735-743
    • Maassen, N.1    Freese, S.2    Schruff, B.3
  • 30
    • 0025270380 scopus 로고
    • High efficiency transformation of intact yeast cells by electric pulses
    • Meilhoc E, Masson JM, Teissie J. 1990. High efficiency transformation of intact yeast cells by electric pulses. Nat Biotechnol 8: 223-227.
    • (1990) Nat Biotechnol , vol.8 , pp. 223-227
    • Meilhoc, E.1    Masson, J.M.2    Teissie, J.3
  • 31
    • 57449118276 scopus 로고    scopus 로고
    • High-temperature ethanol fermentation and transformation with linear DNA in the thermotolerant yeast Kluyveromyces marxianus DMKU3-1042
    • Nonklang S, Abdel-Banat BMA, Cha-aim K, et al. 2008. High-temperature ethanol fermentation and transformation with linear DNA in the thermotolerant yeast Kluyveromyces marxianus DMKU3-1042. Appl Environ Microbiol 74: 7514-7521.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 7514-7521
    • Nonklang, S.1    Abdel-Banat, B.M.A.2    Cha-aim, K.3
  • 32
    • 67049087803 scopus 로고    scopus 로고
    • Construction of flocculent Kluyveromyces marxianus strains suitable for high-temperature ethanol fermentation
    • Nonklang S, Ano A, Abdel-Banat BMA, et al. 2009. Construction of flocculent Kluyveromyces marxianus strains suitable for high-temperature ethanol fermentation. Biosci Biotechnol Biochem 73: 1090-1095.
    • (2009) Biosci Biotechnol Biochem , vol.73 , pp. 1090-1095
    • Nonklang, S.1    Ano, A.2    Abdel-Banat, B.M.A.3
  • 33
    • 28544447826 scopus 로고    scopus 로고
    • Mutation of the Yku80 C terminus and Xrs2 FHA domain specifically block yeast nonhomologous end joining
    • Palmbos PL, Daley JM, Wilson TE. 2005. Mutation of the Yku80 C terminus and Xrs2 FHA domain specifically block yeast nonhomologous end joining. Mol Cell Biol 25: 10782-10790.
    • (2005) Mol Cell Biol , vol.25 , pp. 10782-10790
    • Palmbos, P.L.1    Daley, J.M.2    Wilson, T.E.3
  • 34
    • 33751510874 scopus 로고    scopus 로고
    • Sequential gene integration for the engineering of Kluyveromyces marxianus
    • Pecota DC, Rajgarhia V, Da Silva NA. 2007. Sequential gene integration for the engineering of Kluyveromyces marxianus. J Biotechnol 127: 408-416.
    • (2007) J Biotechnol , vol.127 , pp. 408-416
    • Pecota, D.C.1    Rajgarhia, V.2    Da Silva, N.A.3
  • 35
    • 33746271568 scopus 로고    scopus 로고
    • Highly efficient generation of signal transduction knockout mutants using a fungal strain deficient in the mammalian ku70 ortholog
    • Poggeler S, Kuck U. 2006. Highly efficient generation of signal transduction knockout mutants using a fungal strain deficient in the mammalian ku70 ortholog. Gene 378: 1-10.
    • (2006) Gene , vol.378 , pp. 1-10
    • Poggeler, S.1    Kuck, U.2
  • 36
    • 34447263597 scopus 로고    scopus 로고
    • Application of the Cre-loxP system for multiple gene disruption in the yeast Kluyveromyces marxianus
    • Ribeiro O, Gombert AK, Teixeira JA, Domingues L. 2007. Application of the Cre-loxP system for multiple gene disruption in the yeast Kluyveromyces marxianus. J Biotechnol 131: 20-26.
    • (2007) J Biotechnol , vol.131 , pp. 20-26
    • Ribeiro, O.1    Gombert, A.K.2    Teixeira, J.A.3    Domingues, L.4
  • 37
    • 0027266927 scopus 로고
    • Transformation of Saccharomyces cerevisiae with nonhomologous DNA: Illegitimate integration of transforming DNA into yeast chromosomes and in vivo ligation of transforming DNA to mitochondrial DNA sequences
    • Schiestl RH, Dominska M, Petes TD. 1993. Transformation of Saccharomyces cerevisiae with nonhomologous DNA: illegitimate integration of transforming DNA into yeast chromosomes and in vivo ligation of transforming DNA to mitochondrial DNA sequences. Mol Cell Biol 13: 2697-2705.
    • (1993) Mol Cell Biol , vol.13 , pp. 2697-2705
    • Schiestl, R.H.1    Dominska, M.2    Petes, T.D.3
  • 38
    • 0024799254 scopus 로고
    • High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier
    • Schiestl RH, Gietz RD. 1989. High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr Genet 16: 339-346.
    • (1989) Curr Genet , vol.16 , pp. 339-346
    • Schiestl, R.H.1    Gietz, R.D.2
  • 39
    • 0025777047 scopus 로고
    • Integration of DNA fragments by illegitimate recombination in Saccharomyces cerevisiae
    • Schiestl RH, Petes TD. 1991. Integration of DNA fragments by illegitimate recombination in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 88: 7585-7589.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 7585-7589
    • Schiestl, R.H.1    Petes, T.D.2
  • 40
    • 0032441740 scopus 로고    scopus 로고
    • Ethanol production at elevated temperatures and alcohol concentrations. Part II. Use of Kluyveromyces marxianus IMB3
    • Singh D, Nigam P, Banat IM, et al. 1998. Ethanol production at elevated temperatures and alcohol concentrations. Part II. Use of Kluyveromyces marxianus IMB3. World J Microbiol Biotechnol 14: 823-834.
    • (1998) World J Microbiol Biotechnol , vol.14 , pp. 823-834
    • Singh, D.1    Nigam, P.2    Banat, I.M.3
  • 41
    • 0018449422 scopus 로고
    • High-frequency transformation of yeast: Autonomous replication of hybrid DNA molecules
    • Struhl K, Stinchcomb DT, Scherer S, Davis RW. 1979. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc Natl Acad Sci USA 76: 1035-1039.
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 1035-1039
    • Struhl, K.1    Stinchcomb, D.T.2    Scherer, S.3    Davis, R.W.4
  • 42
    • 0035207040 scopus 로고    scopus 로고
    • Tagging Hansenula polymorpha genes by random integration of linear fragments (RALF)
    • Van Dijk R, Faber KN, Hammond AT, et al. 2001. Tagging Hansenula polymorpha genes by random integration of linear fragments (RALF). Mol Genet Genome 266: 646-656.
    • (2001) Mol Genet Genome , vol.266 , pp. 646-656
    • Van Dijk, R.1    Faber, K.N.2    Hammond, A.T.3
  • 43
    • 0141594726 scopus 로고    scopus 로고
    • Cloning of the KcURA3 gene and development of a transformation system for Kluyveromyces cicerisporus
    • Zhang J, Yuan H, Wen T, et al. 2003. Cloning of the KcURA3 gene and development of a transformation system for Kluyveromyces cicerisporus. Appl Microbiol Biotechnol 62: 387-391.
    • (2003) Appl Microbiol Biotechnol , vol.62 , pp. 387-391
    • Zhang, J.1    Yuan, H.2    Wen, T.3
  • 44
    • 27544434114 scopus 로고    scopus 로고
    • The Mre11/Rad50/Xrs2 complex and non-homologous end-joining of incompatible ends in S. cerevisiae
    • Zhang X, Paull TT. 2005. The Mre11/Rad50/Xrs2 complex and non-homologous end-joining of incompatible ends in S. cerevisiae. DNA Rep (Amst) 4: 1281-1294.
    • (2005) DNA Rep (Amst) , vol.4 , pp. 1281-1294
    • Zhang, X.1    Paull, T.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.