-
1
-
-
77955505357
-
Protein-protein interactions essentials: key concepts to building and analyzing interactome networks
-
De Las Rivas J., Fontanillo C. Protein-protein interactions essentials: key concepts to building and analyzing interactome networks. PLoS Comput. Biol. 2010, 6:e1000807.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
De Las Rivas, J.1
Fontanillo, C.2
-
5
-
-
44449113812
-
Getting started in biological pathway construction and analysis
-
Viswanathan G.A., Seto J., Patil S., et al. Getting started in biological pathway construction and analysis. PLoS Comput. Biol. 2008, 4:e16.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Viswanathan, G.A.1
Seto, J.2
Patil, S.3
-
6
-
-
33748673577
-
Hierarchical modularity of nested bow-ties in metabolic networks
-
Zhao J., Yu H., Luo J., et al. Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinformatics 2006, 7:386.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 386
-
-
Zhao, J.1
Yu, H.2
Luo, J.3
-
7
-
-
66249092826
-
Information flow analysis of interactome networks
-
Missiuro P.V., Liu K., Zou L., et al. Information flow analysis of interactome networks. PLoS Comput. Biol. 2009, 5:e1000350.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Missiuro, P.V.1
Liu, K.2
Zou, L.3
-
8
-
-
33845263666
-
SigFlux: A novel network feature to evaluate the importance of proteins in signal transduction networks
-
Liu W., Li D., Zhang Z., et al. SigFlux: A novel network feature to evaluate the importance of proteins in signal transduction networks. BMC Bioinformatics 2006, 7:515.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 515
-
-
Liu, W.1
Li, D.2
Zhang, Z.3
-
11
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han J.D.J., Bertin N., Hao T., et al. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 2004, 430:88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.J.1
Bertin, N.2
Hao, T.3
-
12
-
-
77951044336
-
Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels
-
Bhardwaj N., Yan K.K., Gerstein M.B. Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels. Proc. Natl. Acad. Sci. U S A. 2010, 107:6841-6846.
-
(2010)
Proc. Natl. Acad. Sci. U S A.
, vol.107
, pp. 6841-6846
-
-
Bhardwaj, N.1
Yan, K.K.2
Gerstein, M.B.3
-
13
-
-
69249127529
-
Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
-
Jothi R., Balaji S., Wuster A., et al. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol. BiolSyst. 2009, 5:294.
-
(2009)
Mol. BiolSyst.
, vol.5
, pp. 294
-
-
Jothi, R.1
Balaji, S.2
Wuster, A.3
-
14
-
-
62549123691
-
Complex topology rather than complex membership is a determinant of protein dosage sensitivity
-
Oberdorf R., Kortemme T. Complex topology rather than complex membership is a determinant of protein dosage sensitivity. Mol. BiolSyst 2009, 5:253.
-
(2009)
Mol. BiolSyst
, vol.5
, pp. 253
-
-
Oberdorf, R.1
Kortemme, T.2
-
15
-
-
70350452758
-
Understanding modularity in molecular networks requires dynamics
-
Alexander R.P., Kim P.M., Emonet T., et al. Understanding modularity in molecular networks requires dynamics. Science Signaling 2009, 2:pe44.
-
(2009)
Science Signaling
, vol.2
-
-
Alexander, R.P.1
Kim, P.M.2
Emonet, T.3
-
17
-
-
81355150988
-
Computational modeling and analysis of insulin induced eukaryotic translation initiation
-
Lequieu J., Chakrabarti A., Nayak S., et al. Computational modeling and analysis of insulin induced eukaryotic translation initiation. PLoS Comput. Biol. 2011, 7:e1002263.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Lequieu, J.1
Chakrabarti, A.2
Nayak, S.3
-
18
-
-
10044260032
-
Modeling and simulation of biological systems with stochasticity
-
Meng T., Somani S., P D. Modeling and simulation of biological systems with stochasticity. In Silico Biol. 2004, 209-293.
-
(2004)
In Silico Biol.
, pp. 209-293
-
-
Meng, T.1
Somani, S.2
P, D.3
-
19
-
-
63549099634
-
Simulation of large-scale rule-based models
-
Colvin J., Monine M.I., Faeder J.R., et al. Simulation of large-scale rule-based models. Bioinformatics 2009, 25:910-917.
-
(2009)
Bioinformatics
, vol.25
, pp. 910-917
-
-
Colvin, J.1
Monine, M.I.2
Faeder, J.R.3
-
20
-
-
74549191284
-
Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics
-
Wang D.Y.Q., Cardelli L., Philip A., et al. Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics. BMC Syst. Biol. 2009, 3:118.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 118
-
-
Wang, D.Y.Q.1
Cardelli, L.2
Philip, A.3
-
21
-
-
79960594395
-
Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range
-
Bachmann J., Raue A., Schilling M., et al. Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range. Mol. BiolSyst. 2011, 7:516.
-
(2011)
Mol. BiolSyst.
, vol.7
, pp. 516
-
-
Bachmann, J.1
Raue, A.2
Schilling, M.3
-
22
-
-
58549108388
-
Reconstruction of biochemical networks in microorganisms
-
Feist A.M., Herrgard M.J., Thiele I., et al. Reconstruction of biochemical networks in microorganisms. Nat. Rev. Microbiol. 2009, 7:129-143.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 129-143
-
-
Feist, A.M.1
Herrgard, M.J.2
Thiele, I.3
-
23
-
-
77951612556
-
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
-
Schellenberger J., Park J.O., Conrad T.M., et al. BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinformatics 2010, 11:213.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 213
-
-
Schellenberger, J.1
Park, J.O.2
Conrad, T.M.3
-
24
-
-
77955062175
-
Increased entropy of signal transduction in the cancer metastasis phenotype
-
Teschendorff A.E., Severini S. Increased entropy of signal transduction in the cancer metastasis phenotype. BMC Syst. Biol. 2010, 4:104.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 104
-
-
Teschendorff, A.E.1
Severini, S.2
-
25
-
-
65149083962
-
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
-
Suzuki H., Forrest A.R., van Nimwegen E., et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat. Genet. 2009, 41:553-562.
-
(2009)
Nat. Genet.
, vol.41
, pp. 553-562
-
-
Suzuki, H.1
Forrest, A.R.2
van Nimwegen, E.3
-
26
-
-
45149106353
-
Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks
-
Zhu J., Zhang B., Smith E.N., et al. Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. Nat. Genet. 2008, 40:854-861.
-
(2008)
Nat. Genet.
, vol.40
, pp. 854-861
-
-
Zhu, J.1
Zhang, B.2
Smith, E.N.3
-
28
-
-
77952961276
-
Network properties of human disease genes with pleiotropic effects
-
Chavali S., Barrenas F., Kanduri K., et al. Network properties of human disease genes with pleiotropic effects. BMC Syst. Biol. 2010, 4:78.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 78
-
-
Chavali, S.1
Barrenas, F.2
Kanduri, K.3
-
29
-
-
41949118715
-
Network properties of genes harboring inherited disease mutations
-
Feldman I., Rzhetsky A., Vitkup D. Network properties of genes harboring inherited disease mutations. Proc. Natl. Acad. Sci. U S A 2008, 105:4323-4328.
-
(2008)
Proc. Natl. Acad. Sci. U S A
, vol.105
, pp. 4323-4328
-
-
Feldman, I.1
Rzhetsky, A.2
Vitkup, D.3
-
30
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
Jonsson P.F., Bates P.A. Global topological features of cancer proteins in the human interactome. Bioinformatics 2006, 22:2291-2297.
-
(2006)
Bioinformatics
, vol.22
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
32
-
-
78649682830
-
A comparative study of cancer proteins in the human protein-protein interaction network
-
Sun J., Zhao Z. A comparative study of cancer proteins in the human protein-protein interaction network. BMC Genet. 2010, 11(Suppl 3):S5.
-
(2010)
BMC Genet.
, vol.11
, Issue.SUPPL. 3
-
-
Sun, J.1
Zhao, Z.2
-
33
-
-
77951952127
-
The power of protein interaction networks for associating genes with diseases
-
Navlakha S., Kingsford C. The power of protein interaction networks for associating genes with diseases. Bioinformatics 2010, 26:1057-1063.
-
(2010)
Bioinformatics
, vol.26
, pp. 1057-1063
-
-
Navlakha, S.1
Kingsford, C.2
-
34
-
-
59649111554
-
Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies
-
Ortutay C., Vihinen M. Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies. Nucleic Acids Res. 2009, 37:622-628.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 622-628
-
-
Ortutay, C.1
Vihinen, M.2
-
35
-
-
70350674928
-
Discovering cancer genes by integrating network and functional properties
-
Li L., Zhang K., Lee J., et al. Discovering cancer genes by integrating network and functional properties. BMC Med. Genet. 2009, 2:61.
-
(2009)
BMC Med. Genet.
, vol.2
, pp. 61
-
-
Li, L.1
Zhang, K.2
Lee, J.3
-
36
-
-
33751017706
-
Discovering disease-genes by topological features in human protein-protein interaction network
-
Xu J., Li Y. Discovering disease-genes by topological features in human protein-protein interaction network. Bioinformatics 2006, 22:2800-2805.
-
(2006)
Bioinformatics
, vol.22
, pp. 2800-2805
-
-
Xu, J.1
Li, Y.2
-
37
-
-
70350701855
-
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis
-
Keller A., Backes C., Gerasch A., et al. A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinformatics 2009, 25:2787-2794.
-
(2009)
Bioinformatics
, vol.25
, pp. 2787-2794
-
-
Keller, A.1
Backes, C.2
Gerasch, A.3
-
38
-
-
77949365759
-
Identification of functional modules that correlate with phenotypic difference. the influence of network topology
-
Hung J.H., Whitfield T.W., Yang T.H., et al. Identification of functional modules that correlate with phenotypic difference. the influence of network topology. Genome Biol. 2010, 11:R23.
-
(2010)
Genome Biol.
, vol.11
-
-
Hung, J.H.1
Whitfield, T.W.2
Yang, T.H.3
-
39
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang H.Y., Lee E., Liu Y.T., et al. Network-based classification of breast cancer metastasis. Mol. BiolSyst. 2007, 3:140.
-
(2007)
Mol. BiolSyst.
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
-
40
-
-
84856094560
-
Differential network biology
-
Ideker T., Krogan N.J. Differential network biology. Mol. BiolSyst 2012, 8:565.
-
(2012)
Mol. BiolSyst
, vol.8
, pp. 565
-
-
Ideker, T.1
Krogan, N.J.2
-
41
-
-
79958152651
-
Pathway analysis of expression data: deciphering functional building blocks of complex diseases
-
Emmert-Streib F., Glazko G.V. Pathway analysis of expression data: deciphering functional building blocks of complex diseases. PLoS Comput. Biol. 2011, 7:e1002053.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Emmert-Streib, F.1
Glazko, G.V.2
-
43
-
-
33645825183
-
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
-
Ein-Dor L., Zuk O., Domany E. Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Proc. Natl. Acad. Sci. U S A 2006, 103:5923-5928.
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 5923-5928
-
-
Ein-Dor, L.1
Zuk, O.2
Domany, E.3
-
44
-
-
78650373804
-
Network medicine: a network-based approach to human disease
-
Barabasi A.L., Gulbahce N., Loscalzo J. Network medicine: a network-based approach to human disease. Nat. Rev. Genet. 2011, 12:56-68.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 56-68
-
-
Barabasi, A.L.1
Gulbahce, N.2
Loscalzo, J.3
-
45
-
-
41649119247
-
Protein networks in disease
-
Ideker T., Sharan R. Protein networks in disease. Genome Res. 2008, 18:644-652.
-
(2008)
Genome Res.
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
46
-
-
58149213932
-
Literature-curated protein interaction datasets
-
Cusick M.E., Yu H., Smolyar A., et al. Literature-curated protein interaction datasets. Nat. Methods 2009, 6:39-46.
-
(2009)
Nat. Methods
, vol.6
, pp. 39-46
-
-
Cusick, M.E.1
Yu, H.2
Smolyar, A.3
-
47
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
-
Hucka M., Finney A., Sauro H.M., et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003, 19:524-531.
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
-
48
-
-
2442595958
-
CellML: its future, present and past
-
Lloyd C.M., Halstead M.D., Nielsen P.F. CellML: its future, present and past. Prog. Biophys. Mol. Biol. 2004, 85:433-450.
-
(2004)
Prog. Biophys. Mol. Biol.
, vol.85
, pp. 433-450
-
-
Lloyd, C.M.1
Halstead, M.D.2
Nielsen, P.F.3
-
49
-
-
0742323374
-
The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data
-
Hermjakob H. The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data. Nat. Biotechnol. 2005, 177-183.
-
(2005)
Nat. Biotechnol.
, pp. 177-183
-
-
Hermjakob, H.1
-
50
-
-
77956664073
-
The BioPAX community standard for pathway data sharing
-
Demir E., Cary M.P., Paley S., et al. The BioPAX community standard for pathway data sharing. Nat. Biotechnol. 2010, 28:935-942.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 935-942
-
-
Demir, E.1
Cary, M.P.2
Paley, S.3
-
51
-
-
68449103579
-
The Systems Biology Graphical Notation
-
Le Novere N., Hucka M., Mi H., et al. The Systems Biology Graphical Notation. Nat. Biotechnol. 2009, 27:735-741.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 735-741
-
-
Le Novere, N.1
Hucka, M.2
Mi, H.3
-
52
-
-
28944444766
-
Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX
-
Stromback L., Lambrix P. Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX. Bioinformatics 2005, 21:4401-4407.
-
(2005)
Bioinformatics
, vol.21
, pp. 4401-4407
-
-
Stromback, L.1
Lambrix, P.2
-
53
-
-
84864081912
-
Comparison and integration of large-scale human protein-protein interaction maps
-
Chaurasia G., Herzel H., Futschik M.E. Comparison and integration of large-scale human protein-protein interaction maps. FEBS J. 2007, 274:300.
-
(2007)
FEBS J.
, vol.274
, pp. 300
-
-
Chaurasia, G.1
Herzel, H.2
Futschik, M.E.3
-
54
-
-
33947419351
-
An evaluation of human protein-protein interaction data in the public domain
-
Mathivanan S., Periaswamy B., Gandhi T.K.B., et al. An evaluation of human protein-protein interaction data in the public domain. BMC Bioinformatics 2006, 7:S19.
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Mathivanan, S.1
Periaswamy, B.2
Gandhi, T.K.B.3
-
55
-
-
34047168855
-
Comparison of human protein-protein interaction maps
-
Futschik M.E., Chaurasia G., Herzel H. Comparison of human protein-protein interaction maps. Bioinformatics 2007, 23:605-611.
-
(2007)
Bioinformatics
, vol.23
, pp. 605-611
-
-
Futschik, M.E.1
Chaurasia, G.2
Herzel, H.3
-
56
-
-
68749099453
-
Pathway databases and tools for their exploitation: benefits, current limitations and challenges
-
Bauer-Mehren A., Furlong L.I., Sanz F. Pathway databases and tools for their exploitation: benefits, current limitations and challenges. Mol. BiolSyst. 2009, 5:290.
-
(2009)
Mol. BiolSyst.
, vol.5
, pp. 290
-
-
Bauer-Mehren, A.1
Furlong, L.I.2
Sanz, F.3
-
57
-
-
77956480115
-
Consistency, comprehensiveness, and compatibility of pathway databases
-
Soh D., Dong D., Guo Y., et al. Consistency, comprehensiveness, and compatibility of pathway databases. BMC Bioinformatics 2010, 11:449.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 449
-
-
Soh, D.1
Dong, D.2
Guo, Y.3
-
58
-
-
79952051920
-
Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale
-
Shmelkov E., Tang Z., Aifantis I., et al. Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale. Biol. Direct 2011, 6:15.
-
(2011)
Biol. Direct
, vol.6
, pp. 15
-
-
Shmelkov, E.1
Tang, Z.2
Aifantis, I.3
-
59
-
-
58149193234
-
STRING 8-a global view on proteins and their functional interactions in 630 organisms
-
Jensen L.J., Kuhn M., Stark M., et al. STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 2009, 37:D412-D416.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
-
60
-
-
78651332286
-
Pathway Commons, a web resource for biological pathway data
-
Cerami E.G., Gross B.E., Demir E., et al. Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res. 2011, 39:D685-D690.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Cerami, E.G.1
Gross, B.E.2
Demir, E.3
-
61
-
-
78651335912
-
ConsensusPathDB: toward a more complete picture of cell biology
-
Kamburov A., Pentchev K., Galicka H., et al. ConsensusPathDB: toward a more complete picture of cell biology. Nucleic Acids Res. 2011, 39:D712-D717.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kamburov, A.1
Pentchev, K.2
Galicka, H.3
-
62
-
-
33645803833
-
CellML2SBML: conversion of CellML into SBML
-
Schilstra M.J., Li L., Matthews J., et al. CellML2SBML: conversion of CellML into SBML. Bioinformatics 2006, 22:1018-1020.
-
(2006)
Bioinformatics
, vol.22
, pp. 1018-1020
-
-
Schilstra, M.J.1
Li, L.2
Matthews, J.3
-
63
-
-
70449515104
-
KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database
-
Moutselos K., Kanaris I., Chatziioannou A., et al. KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. BMC Bioinformatics 2009, 10:324.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 324
-
-
Moutselos, K.1
Kanaris, I.2
Chatziioannou, A.3
-
64
-
-
54249091564
-
Presenting and exploring biological pathways with PathVisio
-
van Iersel M.P., Kelder T., Pico A.R., et al. Presenting and exploring biological pathways with PathVisio. BMC Bioinformatics 2008, 9:399.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 399
-
-
van Iersel, M.P.1
Kelder, T.2
Pico, A.R.3
-
65
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
Smoot M.E., Ono K., Ruscheinski J., et al. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27:431-432.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
-
66
-
-
67849122322
-
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology
-
Hu Z., Hung J.H., Wang Y., et al. VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Res. 2009, 37:W115-W121.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hu, Z.1
Hung, J.H.2
Wang, Y.3
-
68
-
-
85142162458
-
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks (vol 22, pg 2968, 2006)
-
Yip K.Y., Yu H.Y., Kim P.M., et al. The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks (vol 22, pg 2968, 2006). Bioinformatics 2007, 23:1048.
-
(2007)
Bioinformatics
, vol.23
, pp. 1048
-
-
Yip, K.Y.1
Yu, H.Y.2
Kim, P.M.3
-
69
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P., Markiel A., Ozier O., et al. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13:2498-2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
-
70
-
-
47949099328
-
Cell Designer 3.5: A versatile modeling tool for biochemical networks
-
Funahashi A., Matsuoka Y., Jouraku A., et al. Cell Designer 3.5: A versatile modeling tool for biochemical networks. Proc. IEEE 2008, 96:1254-1265.
-
(2008)
Proc. IEEE
, vol.96
, pp. 1254-1265
-
-
Funahashi, A.1
Matsuoka, Y.2
Jouraku, A.3
-
71
-
-
67849106535
-
MetaboAnalyst: a web server for metabolomic data analysis and interpretation
-
Xia J., Psychogios N., Young N., et al. MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic Acids Res. 2009, 37:W652-W660.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Xia, J.1
Psychogios, N.2
Young, N.3
-
72
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang D.W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
73
-
-
34249317298
-
Gene set enrichment analysis (GSEA) for interpreting gene expression profiles
-
Shi J., Walker M.G. Gene set enrichment analysis (GSEA) for interpreting gene expression profiles. Curr. Bioinform. 2007, 2:133-137.
-
(2007)
Curr. Bioinform.
, vol.2
, pp. 133-137
-
-
Shi, J.1
Walker, M.G.2
|