-
1
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
10.1093/nar/28.1.27, 102409, 10592173
-
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28(1):27-30. 10.1093/nar/28.1.27, 102409, 10592173.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
2
-
-
84888303415
-
KEGG FTP
-
KEGG FTP. , http://www.genome.jp/kegg/download/ftp.html
-
-
-
-
4
-
-
84888286792
-
Systems-biology.org - Model Repository
-
systems-biology.org - Model Repository. , http://systems-biology.org/001/001.html
-
-
-
-
5
-
-
84887818720
-
KEGG API
-
KEGG API. , http://www.genome.jp/kegg/soap/
-
-
-
-
6
-
-
84888289200
-
KGML
-
KGML. , http://www.genome.jp/kegg/xml/
-
-
-
-
7
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
-
10.1093/bioinformatics/btg015, 12611808
-
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003, 19(4):524-531. 10.1093/bioinformatics/btg015, 12611808.
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
Bornstein, B.J.8
Bray, D.9
Cornish-Bowden, A.10
-
8
-
-
84888286198
-
ERATO-SORST Kitano Symbiotic Systems Project
-
ERATO-SORST Kitano Symbiotic Systems Project. , http://sbi.jp/symbio/symbio2/objectives.html
-
-
-
-
10
-
-
9444266171
-
CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
-
Funahashi A, Morohashi M, Kitano H, Tanimura N. CellDesigner: a process diagram editor for gene-regulatory and biochemical networks. BIOSILICO 2003, 1(5):159-162.
-
(2003)
BIOSILICO
, vol.1
, Issue.5
, pp. 159-162
-
-
Funahashi, A.1
Morohashi, M.2
Kitano, H.3
Tanimura, N.4
-
11
-
-
0036372791
-
The ERATO Systems Biology Workbench: enabling interaction and exchange between software tools for computational biology
-
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle J, Kitano H. The ERATO Systems Biology Workbench: enabling interaction and exchange between software tools for computational biology. Pac Symp Biocomput 2002, 450-461.
-
(2002)
Pac Symp Biocomput
, pp. 450-461
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.5
Kitano, H.6
-
12
-
-
33644874819
-
From genomics to chemical genomics: new developments in KEGG
-
Database, 10.1093/nar/gkj102, 1347464, 16381885
-
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res 2006, (34 Database):D354-357. 10.1093/nar/gkj102, 1347464, 16381885.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
13
-
-
33847320742
-
Dynamic exploration and editing of KEGG pathway diagrams
-
10.1093/bioinformatics/btl611, 17142815
-
Klukas C, Schreiber F. Dynamic exploration and editing of KEGG pathway diagrams. Bioinformatics 2007, 23(3):344-350. 10.1093/bioinformatics/btl611, 17142815.
-
(2007)
Bioinformatics
, vol.23
, Issue.3
, pp. 344-350
-
-
Klukas, C.1
Schreiber, F.2
-
14
-
-
65649116900
-
KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor
-
10.1093/bioinformatics/btp167, 2682514, 19307239
-
Zhang JD, Wiemann S. KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor. Bioinformatics 2009, 25(11):1470-1471. 10.1093/bioinformatics/btp167, 2682514, 19307239.
-
(2009)
Bioinformatics
, vol.25
, Issue.11
, pp. 1470-1471
-
-
Zhang, J.D.1
Wiemann, S.2
-
15
-
-
55949089680
-
An introduction to metabolic networks and their structural analysis
-
Lacroix V, Cottret L, Thébault P, Sagot M-F. An introduction to metabolic networks and their structural analysis. IEEE/ACM Transactions on Computational Biololy and Bioinformatics 2008, 5(4):594-617.
-
(2008)
IEEE/ACM Transactions on Computational Biololy and Bioinformatics
, vol.5
, Issue.4
, pp. 594-617
-
-
Lacroix, V.1
Cottret, L.2
Thébault, P.3
Sagot, M.-.F.4
-
16
-
-
67649128734
-
Building in-silico pathway SBML models from heterogeneous sources
-
Kanaris I, Moutselos K, Chatziioannou A, Maglogiannis I, Kolisis FN. Building in-silico pathway SBML models from heterogeneous sources. 8th IEEE International Conference on BioInformatics and BioEngineering (BIBE 2008) Athens, Greece; 2008, 1-6.
-
(2008)
8th IEEE International Conference on BioInformatics and BioEngineering (BIBE 2008) Athens, Greece;
, pp. 1-6
-
-
Kanaris, I.1
Moutselos, K.2
Chatziioannou, A.3
Maglogiannis, I.4
Kolisis, F.N.5
-
17
-
-
33947623106
-
SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML)
-
10.1186/1471-2105-8-79, 1831489, 17341299
-
Rodriguez N, Donizelli M, Le Novere N. SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML). BMC Bioinformatics 2007, 8:79. 10.1186/1471-2105-8-79, 1831489, 17341299.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 79
-
-
Rodriguez, N.1
Donizelli, M.2
Le Novere, N.3
-
18
-
-
45949092783
-
VisANT: an integrative framework for networks in systems biology
-
10.1093/bib/bbn020, 2743399, 18463131
-
Hu Z, Snitkin ES, DeLisi C. VisANT: an integrative framework for networks in systems biology. Brief Bioinform 2008, 9(4):317-325. 10.1093/bib/bbn020, 2743399, 18463131.
-
(2008)
Brief Bioinform
, vol.9
, Issue.4
, pp. 317-325
-
-
Hu, Z.1
Snitkin, E.S.2
DeLisi, C.3
-
19
-
-
33645241830
-
VANTED: a system for advanced data analysis and visualization in the context of biological networks
-
10.1186/1471-2105-7-109, 1413562, 16519817
-
Junker BH, Klukas C, Schreiber F. VANTED: a system for advanced data analysis and visualization in the context of biological networks. BMC Bioinformatics 2006, 7:109. 10.1186/1471-2105-7-109, 1413562, 16519817.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 109
-
-
Junker, B.H.1
Klukas, C.2
Schreiber, F.3
-
20
-
-
84888302899
-
SemanticSBML: a tool for annotating, checking, and merging of biochemical models in SBML format
-
SemanticSBML: a tool for annotating, checking, and merging of biochemical models in SBML format. , http://sysbio.molgen.mpg.de/semanticsbml/index.html
-
-
-
-
21
-
-
40749162829
-
LibSBML: an API library for SBML
-
10.1093/bioinformatics/btn051, 2517632, 18252737
-
Bornstein BJ, Keating SM, Jouraku A, Hucka M. LibSBML: an API library for SBML. Bioinformatics 2008, 24(6):880-881. 10.1093/bioinformatics/btn051, 2517632, 18252737.
-
(2008)
Bioinformatics
, vol.24
, Issue.6
, pp. 880-881
-
-
Bornstein, B.J.1
Keating, S.M.2
Jouraku, A.3
Hucka, M.4
-
23
-
-
44949099336
-
SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks
-
10.1186/1752-0509-2-39, 2412839, 18447902
-
Drager A, Hassis N, Supper J, Schroder A, Zell A. SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks. BMC Syst Biol 2008, 2:39. 10.1186/1752-0509-2-39, 2412839, 18447902.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 39
-
-
Drager, A.1
Hassis, N.2
Supper, J.3
Schroder, A.4
Zell, A.5
-
24
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
10.1038/nbt1156, 16333295
-
Le Novere N, Finney A, Hucka M, Bhalla US, Campagne F, Collado-Vides J, Crampin EJ, Halstead M, Klipp E, Mendes P. Minimum information requested in the annotation of biochemical models (MIRIAM). Nat Biotechnol 2005, 23(12):1509-1515. 10.1038/nbt1156, 16333295.
-
(2005)
Nat Biotechnol
, vol.23
, Issue.12
, pp. 1509-1515
-
-
Le Novere, N.1
Finney, A.2
Hucka, M.3
Bhalla, U.S.4
Campagne, F.5
Collado-Vides, J.6
Crampin, E.J.7
Halstead, M.8
Klipp, E.9
Mendes, P.10
-
25
-
-
84888291232
-
SBO:Systems Biology Ontology
-
SBO:Systems Biology Ontology. , http://www.ebi.ac.uk/sbo
-
-
-
|