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Volumn 2011, Issue , 2011, Pages

NetSlim: High-confidence curated signaling maps

(31)  Raju, Rajesh a,b   Nanjappa, Vishalakshi a   Balakrishnan, Lavanya a,b   Radhakrishnan, Aneesha a,c   Thomas, Joji Kurian a   Sharma, Jyoti d   Tian, Maozhen e   Palapetta, Shyam Mohan a,c   Subbannayya, Tejaswini a   Sekhar, Nirujogi Raja a,c   Muthusamy, Babylakshmi a,c   Goel, Renu a,b   Subbannayya, Yashwanth a,f   Telikicherla, Deepthi a,b   Bhattacharjee, Mitali a,g   Pinto, Sneha M a,d   Syed, Nazia a   Srikanth, Manda Srinivas a   Sathe, Gajanan J a   Ahmad, Sartaj a   more..


Author keywords

[No Author keywords available]

Indexed keywords

TRANSFORMING GROWTH FACTOR BETA;

EID: 84864041694     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bar032     Document Type: Article
Times cited : (24)

References (58)
  • 1
    • 33748743604 scopus 로고    scopus 로고
    • Visualizing biological pathways: Requirements analysis, systems evaluation and research agenda
    • Saraiya, P., North, C. and Duca, K. (2005b) Visualizing biological pathways: requirements analysis, systems evaluation and research agenda. Inform. Visual., 4, 1-15.
    • (2005) Inform. Visual. , vol.4 , pp. 1-15
    • Saraiya, P.1    North, C.2    Duca, K.3
  • 2
    • 70749083453 scopus 로고    scopus 로고
    • Elucidation of functional consequences of signalling pathway interactions
    • Ihekwaba, A. E., Nguyen, P. T. and Priami, C. (2009) Elucidation of functional consequences of signalling pathway interactions. BMC Bioinformatics, 6, 370.
    • (2009) BMC Bioinformatics , vol.6 , pp. 370
    • Ihekwaba, A.E.1    Nguyen, P.T.2    Priami, C.3
  • 3
    • 62849094483 scopus 로고    scopus 로고
    • Navigating the network: Signaling cross-talk in hematopoietic cells
    • Fraser, I. D. and Germain, R. N. (2009) Navigating the network: signaling cross-talk in hematopoietic cells. Nat. Immunol., 10, 327-331.
    • (2009) Nat. Immunol. , vol.10 , pp. 327-331
    • Fraser, I.D.1    Germain, R.N.2
  • 4
    • 71549131604 scopus 로고    scopus 로고
    • Discrete dynamic modeling of cellular signaling networks
    • Albert, R. and Wang, R. S. (2009) Discrete dynamic modeling of cellular signaling networks. Methods Enzymol., 467, 281-306.
    • (2009) Methods Enzymol. , vol.467 , pp. 281-306
    • Albert, R.1    Wang, R.S.2
  • 5
    • 77349091815 scopus 로고    scopus 로고
    • Netpath: A public resource of curated signal transduction pathways
    • Kandasamy, K., Mohan, S. S., Raju, R. et al. (2010) NetPath: a public resource of curated signal transduction pathways. Genome Biol., 11, R3.
    • (2010) Genome Biol. , vol.11
    • Kandasamy, K.1    Mohan, S.S.2    Raju, R.3
  • 6
    • 70350664651 scopus 로고    scopus 로고
    • Pathbuilder-open source software for annotating and developing pathway resources
    • Kandasamy, K., Keerthikumar, S., Raju, R. et al. (2009) PathBuilder-open source software for annotating and developing pathway resources. Bioinformatics, 25, 2860-2862.
    • (2009) Bioinformatics , vol.25 , pp. 2860-2862
    • Kandasamy, K.1    Keerthikumar, S.2    Raju, R.3
  • 8
    • 22944451507 scopus 로고    scopus 로고
    • An insight-based methodology for evaluating bioinformatics visualizations
    • DOI 10.1109/TVCG.2005.53
    • Saraiya, P., North, C. and Duca, K. (2005a) An insight-based methodology for evaluating bioinformatics visualizations. IEEE Trans. Visualis Comput. Graphics., 11, 443-456. (Pubitemid 41049906)
    • (2005) IEEE Transactions on Visualization and Computer Graphics , vol.11 , Issue.4 , pp. 443-456
    • Saraiya, P.1    North, C.2    Duca, K.3
  • 9
    • 85081768013 scopus 로고    scopus 로고
    • The Cancer Cell Map ( 20 November, date last accessed
    • The Cancer Cell Map (http://cancer.cellmap.org/) (20 November 2010, date last accessed).
    • (2010)
  • 10
    • 85081767170 scopus 로고    scopus 로고
    • Pathway Commons ( 20 November, date last accessed
    • Pathway Commons (http://www.pathwaycommons.org/) (20 November 2010, date last accessed).
    • (2010)
  • 12
    • 77956664073 scopus 로고    scopus 로고
    • The biopax community standard for pathway data sharing
    • Demir, E., Cary, M. P., Paley, S. et al. (2010) The BioPAX community standard for pathway data sharing. Nat. Biotechnol., 28, 935-942.
    • (2010) Nat. Biotechnol. , vol.28 , pp. 935-942
    • Demir, E.1    Cary, M.P.2    Paley, S.3
  • 13
    • 85081761412 scopus 로고    scopus 로고
    • PathVisio ( 20 November, date last accessed
    • PathVisio (www.PathVisio.org) (20 November 2010, date last accessed).
    • (2010)
  • 14
    • 34447640967 scopus 로고    scopus 로고
    • Genmapp 2: New features and resources for pathway analysis
    • Salomonis, N., Hanspers, K., Zambon, A. C. et al. (2007) GenMAPP 2: new features and resources for pathway analysis. BMC Bioinformatics, 24, 217.
    • (2007) BMC Bioinformatics , vol.24 , pp. 217
    • Salomonis, N.1    Hanspers, K.2    Zambon, A.C.3
  • 15
    • 0034604110 scopus 로고    scopus 로고
    • Role of transforming growth factor beat in human disease
    • DOI 10.1056/NEJM200005043421807
    • Blobe, G. C., Schiemann, W. P. and Lodish, H. F. (2000) Role of transforming growth factor beta in human disease. N. Engl. J. Med., 342, 1350-1358. (Pubitemid 30408720)
    • (2000) New England Journal of Medicine , vol.342 , Issue.18 , pp. 1350-1358
    • Blobe, G.C.1    Schiemann, W.P.2    Lodish, H.F.3
  • 16
    • 33845678877 scopus 로고    scopus 로고
    • Role of transforming growth factore-beta in cancer progression
    • DOI 10.2217/14796694.2.6.743
    • Galliher, A. J., Neil, J. R. and Schiemann, W. P. (2006) Role of transforming growth factor-beta in cancer progression. Future Oncol., 2, 743-763. (Pubitemid 44941992)
    • (2006) Future Oncology , vol.2 , Issue.6 , pp. 743-763
    • Galliher, A.J.1    Neil, J.R.2    Schiemann, W.P.3
  • 17
    • 34248571400 scopus 로고    scopus 로고
    • Targeted TGF-beta chemotherapies: Friend or foe in treating human malignancies?
    • DOI 10.1586/14737140.7.5.609
    • Schiemann, W. P. (2007) Targeted TGF-beta chemotherapies: friend or foe in treating human malignancies? Expert Rev. Anticancer Ther., 7, 609-611. (Pubitemid 46805559)
    • (2007) Expert Review of Anticancer Therapy , vol.7 , Issue.5 , pp. 609-611
    • Schiemann, W.P.1
  • 18
    • 66349135076 scopus 로고    scopus 로고
    • The tgf-beta paradox in human cancer: An update
    • Tian, M. and Schiemann, W. P. (2009) The TGF-beta paradox in human cancer: an update. Future Oncol., 5, 259-271.
    • (2009) Future Oncol. , vol.5 , pp. 259-271
    • Tian, M.1    Schiemann, W.P.2
  • 19
    • 0141541761 scopus 로고    scopus 로고
    • SPARC inhibits epithelial cell proliferation in part through stimulation of the transforming growth factor-beta-signaling system
    • DOI 10.1091/mbc.E03-01-0001
    • Schiemann, B. J., Neil J., R. and Schiemann, W. P. (2003) SPARC inhibits epithelial cell proliferation in part through stimulation of the transforming growth factor-beta-signaling system. Mol. Biol. Cell., 14, 3977-3988. (Pubitemid 37186302)
    • (2003) Molecular Biology of the Cell , vol.14 , Issue.10 , pp. 3977-3988
    • Schiemann, B.J.1    Neil, J.R.2    Schiemann, W.P.3
  • 20
    • 0037439630 scopus 로고    scopus 로고
    • Making sense of latent TGFbeta activation
    • DOI 10.1242/jcs.00229
    • Annes, J. P., Munger, J. S. and Rifkin, D. B. (2003) Making sense of latent TGFbeta activation. J. Cell Sci., 116, 217-224. (Pubitemid 36163863)
    • (2003) Journal of Cell Science , vol.116 , Issue.2 , pp. 217-224
    • Annes, J.P.1    Munger, J.S.2    Rifkin, D.B.3
  • 21
    • 72449129445 scopus 로고    scopus 로고
    • Thrombospondins function as regulators of angiogenesis
    • Bornstein, P. (2009) Thrombospondins function as regulators of angiogenesis. J. Cell Commun. Signal, 3, 189-200.
    • (2009) J. Cell Commun. Signal , vol.3 , pp. 189-200
    • Bornstein, P.1
  • 22
    • 27644538315 scopus 로고    scopus 로고
    • Integrin-mediated activation of latent transforming growth factor beta
    • DOI 10.1007/s10555-005-5131-6
    • Sheppard, D. (2005) Integrin-mediated activation of latent transforming growth factor beta. Cancer Metastasis Rev., 24, 395-402. (Pubitemid 41569979)
    • (2005) Cancer and Metastasis Reviews , vol.24 , Issue.3 , pp. 395-402
    • Sheppard, D.1
  • 23
    • 0026496172 scopus 로고
    • Tgf beta signals through a heteromeric protein kinase receptor complex
    • Wrana, J. L., Attisano, L., Cárcamo, J. et al. (1992) TGF beta signals through a heteromeric protein kinase receptor complex. Cell, 71, 1003-1014.
    • (1992) Cell , vol.71 , pp. 1003-1014
    • Wrana, J.L.1    Attisano, L.2    Cárcamo, J.3
  • 24
    • 0027367937 scopus 로고
    • Signaling activity of transforming growth factor beta type II receptors lacking specific domains in the cytoplasmic region
    • Wieser, R., Attisano, L., Wrana, J. L. and Massagué , J. (1993) Signaling activity of transforming growth factor beta type II receptors lacking specific domains in the cytoplasmic region. Mol. Cell Biol., 13, 7239-7247. (Pubitemid 23354247)
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.12 , pp. 7239-7247
    • Wieser, R.1    Attisano, L.2    Wrana, J.L.3    Massague, J.4
  • 25
    • 0010270065 scopus 로고
    • Tgf-beta receptors: Structure and function
    • Lin, H. Y. and Moustakas, A. (1994) TGF-beta receptors: structure and function. Cell Mol. Biol., 40, 337-349.
    • (1994) Cell Mol. Biol. , vol.40 , pp. 337-349
    • Lin, H.Y.1    Moustakas, A.2
  • 26
    • 0035816662 scopus 로고    scopus 로고
    • Functional roles for the cytoplasmic domain of the type iii transforming growth factor beta receptor in regulating transforming growth factor beta signaling
    • Blobe, G. C., Schiemann, W. P., Pepin, M. C. et al. (2001) Functional roles for the cytoplasmic domain of the type III transforming growth factor beta receptor in regulating transforming growth factor beta signaling. J. Biol. Chem., 276, 24627-24637.
    • (2001) J. Biol. Chem. , vol.276 , pp. 24627-24637
    • Blobe, G.C.1    Schiemann, W.P.2    Pepin, M.C.3
  • 27
    • 0028170226 scopus 로고
    • Mechanism of activation of the TGF-beta receptor
    • DOI 10.1038/370341a0
    • Wrana, J. L., Attisano, L., Wieser, R. et al. (1994) Mechanism of activation of the TGF-beta receptor. Nature, 370, 341-347. (Pubitemid 2110860)
    • (1994) Nature , vol.370 , Issue.6488 , pp. 341-347
    • Wrana, J.L.1    Attisano, L.2    Wieser, R.3    Ventura, F.4    Massague, J.5
  • 28
    • 0028937160 scopus 로고
    • Biochemical evidence for the autophosphorylation and transphosphorylation of transforming growth factor beta receptor kinases
    • Chen, F. and Weinberg, R. A. (1995) Biochemical evidence for the autophosphorylation and transphosphorylation of transforming growth factor beta receptor kinases. Proc. Natl Acad. Sci. USA, 92, 1565-1569.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 1565-1569
    • Chen, F.1    Weinberg, R.A.2
  • 31
    • 0032428684 scopus 로고    scopus 로고
    • SARA, a FYVE domain protein that recruits Smad2 to the TGFbeta receptor
    • DOI 10.1016/S0092-8674(00)81701-8
    • Tsukazaki, T., Chiang, T. A., Davison, A. F. et al. (1998) SARA, a FYVE domain protein that recruits Smad2 to the TGFbeta receptor. Cell, 95, 779-791. (Pubitemid 29014458)
    • (1998) Cell , vol.95 , Issue.6 , pp. 779-791
    • Tsukazaki, T.1    Chiang, T.A.2    Davison, A.F.3    Attisano, L.4    Wrana, J.L.5
  • 33
    • 4544256756 scopus 로고    scopus 로고
    • Cytoplasmic PML function in TGF-beta signalling
    • DOI 10.1038/nature02783
    • Lin, H. K., Bergmann, S. and Pandolfi, P. P. (2004) Cytoplasmic PML function in TGF-beta signalling. Nature, 431, 205-211. (Pubitemid 39243475)
    • (2004) Nature , vol.431 , Issue.7005 , pp. 205-211
    • Lin, H.-K.1    Bergmann, S.2    Pandolfi, P.P.3
  • 34
    • 0035355473 scopus 로고    scopus 로고
    • The adaptor molecule disabled-2 links the transforming growth factor beta receptors to the Smad pathway
    • DOI 10.1093/emboj/20.11.2789
    • Hocevar, B. A., Smine, A., Xu, X. X. and Howe, P. H. (2001) The adaptor molecule Disabled-2 links the transforming growth factor beta receptors to the Smad pathway. EMBO J., 20, 2789-2801. (Pubitemid 32938562)
    • (2001) EMBO Journal , vol.20 , Issue.11 , pp. 2789-2801
    • Hocevar, B.A.1    Smine, A.2    Xu, X.-X.3    Howe, P.H.4
  • 37
    • 0033996038 scopus 로고    scopus 로고
    • STRAP and Smad7 synergize in the inhibition of transforming growth factor beta signaling
    • DOI 10.1128/MCB.20.9.3157-3167.2000
    • Datta, P. K. and Moses, H. L. (2000) STRAP and Smad7 synergize in the inhibition of transforming growth factor beta signaling. Mol. Cell. Biol., 20, 3157-3167. (Pubitemid 30215028)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.9 , pp. 3157-3167
    • Datta, P.K.1    Moses, H.L.2
  • 38
    • 2342658908 scopus 로고    scopus 로고
    • Cloning of a novel signaling molecule, amsh-2, that potentiates transforming growth factor beta signaling
    • Ibarrola, N., Kratchmarova, I., Nakajima, D. et al. (2004) Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling. BMC Cell. Biol., 5, 2.
    • (2004) BMC Cell. Biol. , vol.5 , pp. 2
    • Ibarrola, N.1    Kratchmarova, I.2    Nakajima, D.3
  • 40
    • 27644494876 scopus 로고    scopus 로고
    • Smad transcription factors
    • DOI 10.1101/gad.1350705
    • Massagué , J., Seoane, J. and Wotton, D. (2005) Smad transcription factors. Genes Dev., 19, 2783-2810. (Pubitemid 41739965)
    • (2005) Genes and Development , vol.19 , Issue.23 , pp. 2783-2810
    • Massague, J.1    Seoane, J.2    Wotton, D.3
  • 41
    • 15444372825 scopus 로고    scopus 로고
    • Type I transforming growth factor beta receptor binds to and activates phosphatidylinositol 3-kinase
    • DOI 10.1074/jbc.M413223200
    • Yi, J. Y., Shin, I. and Arteaga, C. L. (2005) Type I transforming growth factor beta receptor binds to and activates phosphatidylinositol 3-kinase. J. Biol. Chem., 280, 10870-10876. (Pubitemid 40395952)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.11 , pp. 10870-10876
    • Jae, Y.Y.1    Shin, I.2    Arteaga, C.L.3
  • 42
    • 67650085171 scopus 로고    scopus 로고
    • Tgf-beta activates akt kinase through a microrna-dependent amplifying circuit targeting pten
    • Kato, M., Putta, S., Wang, M. et al. (2009) TGF-beta activates Akt kinase through a microRNA-dependent amplifying circuit targeting PTE N. Nat. Cell. Biol., 11, 881-889.
    • (2009) Nat. Cell. Biol. , vol.11 , pp. 881-889
    • Kato, M.1    Putta, S.2    Wang, M.3
  • 43
    • 34547587877 scopus 로고    scopus 로고
    • Cell size and invasion in TGF-beta-induced epithelial to mesenchymal transition is regulated by activation of the mTOR pathway
    • DOI 10.1083/jcb.200611146
    • Lamouille, S. and Derynck, R. (2007) Cell size and invasion in TGF-beta-induced epithelial to mesenchymal transition is regulated by activation of the mTOR pathway. J. Cell Biol., 178, 437-451. (Pubitemid 47196152)
    • (2007) Journal of Cell Biology , vol.178 , Issue.3 , pp. 437-451
    • Lamouille, S.1    Derynck, R.2
  • 44
    • 33747086130 scopus 로고    scopus 로고
    • Beta3 integrin and src facilitate transforming growth factor-beta mediated induction of epithelial-mesenchymal transition in mammary epithelial cells
    • Galliher, A. J. and Schiemann, W. P. (2006) Beta3 integrin and Src facilitate transforming growth factor-beta mediated induction of epithelial-mesenchymal transition in mammary epithelial cells. Breast Cancer Res., 8, R42.
    • (2006) Breast Cancer Res. , vol.8
    • Galliher, A.J.1    Schiemann, W.P.2
  • 45
    • 71749100944 scopus 로고    scopus 로고
    • Therapeutic targeting of the focal adhesion complex prevents oncogenic tgf-beta signaling and metastasis
    • Wendt, M. K. and Schiemann, W. P. (2009) Therapeutic targeting of the focal adhesion complex prevents oncogenic TGF-beta signaling and metastasis. Breast Cancer Res., 11, R68.
    • (2009) Breast Cancer Res. , vol.11
    • Wendt, M.K.1    Schiemann, W.P.2
  • 47
    • 0036872980 scopus 로고    scopus 로고
    • Transforming growth factor beta activates Rac1 and Cdc42Hs GTPases and the JNK pathway in the skeletal muscle cells
    • DOI 10.1016/S0248-4900(02)00023-0, PII S0248490002000230
    • Meriane, M., Charrasse, S., Comunale, F. et al. (2002) Transforming growth factor beta activates Rac1 and Cdc42Hs GTPases and the JNK pathway in skeletal muscle cells. Biol Cell., 94, 535-543. (Pubitemid 36113703)
    • (2002) Biology of the Cell , vol.94 , Issue.7-8 , pp. 535-543
    • Meriane, M.1    Charrasse, S.2    Comunale, F.3    Gauthier-Rouviere, C.4
  • 48
    • 0042303832 scopus 로고    scopus 로고
    • Transforming growth factor-beta1 activates interleukin-6 expression in prostate cancer cells through the synergistic collaboration of the Smad2, p38-NF-kappaB, JNK, and Ras signaling pathways
    • DOI 10.1038/sj.onc.1206478
    • Park, J. I., Lee, M. G., Cho, K. et al. (2003) Transforming growth factor-beta1 activates interleukin-6 expression in prostate cancer cells through the synergistic collaboration of the Smad2, p38-NF-kappaB, JNK, and Ras signaling pathways. Oncogene., 22, 4314-4332. (Pubitemid 36897963)
    • (2003) Oncogene , vol.22 , Issue.28 , pp. 4314-4332
    • Park, J.-I.1    Lee, M.-G.2    Cho, K.3    Park, B.-J.4    Chae, K.-S.5    Byun, D.-S.6    Ryu, B.-K.7    Park, Y.-K.8    Chi, S.-G.9
  • 51
    • 0037024612 scopus 로고    scopus 로고
    • Science's Signal Transduction Knowledge Environment: The Connections Maps database
    • Gough, N. R. (2002) Science's signal transduction knowledge environment: the connections maps database. Ann. NY Acad. Sci., 971, 585-587. (Pubitemid 35305362)
    • (2002) Annals of the New York Academy of Sciences , vol.971 , pp. 585-587
    • Gough, N.R.1
  • 52
    • 58149177166 scopus 로고    scopus 로고
    • Reactome knowledgebase of human biological pathways and processes
    • Matthews, L., Gopinath, G., Gillespie, M. et al. (2009) Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res., 37, D619-D622.
    • (2009) Nucleic Acids Res. , vol.37
    • Matthews, L.1    Gopinath, G.2    Gillespie, M.3
  • 53
    • 33846067524 scopus 로고    scopus 로고
    • PANTHER version 6: Protein sequence and function evolution data with expanded representation of biological pathways
    • DOI 10.1093/nar/gkl869
    • Mi, H., Guo, N., Kejariwal, A. and Thomas, P. D. (2007) PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res., 35, D247-D252. (Pubitemid 46056208)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Mi, H.1    Guo, N.2    Kejariwal, A.3    Thomas, P.D.4
  • 55
    • 77954260093 scopus 로고    scopus 로고
    • Visibioweb: Visualization and layout services for biopax pathway models
    • Dilek, A., Belviranli, M. E. and Dogrusoz, U. (2010) VISIBIOweb: visualization and layout services for BioPAX pathway models. Nucleic Acids Res., 38, W150-W154.
    • (2010) Nucleic Acids Res. , vol.38
    • Dilek, A.1    Belviranli, M.E.2    Dogrusoz, U.3
  • 56
    • 77949499064 scopus 로고    scopus 로고
    • Chibe: Interactive visualization and manipulation of biopax pathway models
    • Babur, O., Dogrusoz, U., Demir, E. and Sander, C. (2010) ChiBE: interactive visualization and manipulation of BioPAX pathway models. Bioinformatics, 26, 429-431.
    • (2010) Bioinformatics , vol.26 , pp. 429-431
    • Babur, O.1    Dogrusoz, U.2    Demir, E.3    Sander, C.4
  • 57
    • 85081770331 scopus 로고    scopus 로고
    • Creative Commons license version 2.5 ( 20 November 2010, date last accessed
    • Creative Commons license version 2.5 (http://creativecommons.org/ licenses/by/2.5/) (20 November 2010, date last accessed).
  • 58
    • 68449103579 scopus 로고    scopus 로고
    • The systems biology graphical notation
    • Le Novère, N., Hucka, M., Mi, H. et al. (2009) The systems biology graphical notation. Nat Biotechnol., 27, 735-741.
    • (2009) Nat Biotechnol. , vol.27 , pp. 735-741
    • Le Novère, N.1    Hucka, M.2    Mi, H.3


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