PathBuilder - Open source software for annotating and developing pathway resources

Bioinformatics

Volumn 25, Issue 21, 2009, Pages 2860-2862

  Kandasamy, Kumaran ^a,b,c   Keerthikumar, Shivakumar ^a,b   Raju, Rajesh ^a,b   Keshava Prasad, T S ^a   Ramachandra, Y L ^b   Mohan, Sujatha ^a,d   Pandey, Akhilesh ^c  

^a Institute of Bioinformatics   (India)

^b KUVEMPU UNIVERSITY   (India)

^c JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d RIKEN YOKOHAMA INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOMATION; COMPUTER GRAPHICS; COMPUTER PROGRAM; ENZYME SUBSTRATE; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INFORMATION SERVICE; INFORMATION STORAGE; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; TRANSCRIPTOMICS;

COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; INFORMATION STORAGE AND RETRIEVAL; INTERNET; SOFTWARE;

EID: 70350664651     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp453     Document Type: Article

References (13)

1. Bader,G.D. et al. (2006) Pathguide: A pathway resource list. Nucleic Acids Res., 34, D504-D506.
2. Batagelj V,M.A. (1998) Pajek - program for large network analysis. Connections, 2, 47-57.
3. Breitkreutz,B.J. et al. (2003) Osprey: A network visualization system. Genome Biol., 4, R22.
4. Cerami,E.G. et al. (2006) cPath: Open source software for collecting, storing, and querying biological pathways. BMC Bioinformatics, 7, 497.
5. Dahlquist,K.D. et al. (2002) GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat. Genet., 31, 19-20.
6. Demir,E. et al. (2002) PATIKA: An integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinformatics, 18, 996-1003.
7. Hermjakob,H. et al. (2004) The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data. Nat. Biotechnol., 22, 177-183.
8. Hooper,S.D. and Bork,P. (2005) Medusa: A simple tool for interaction graph analysis. Bioinformatics, 21, 4432-4433.
9. Kerrien,S. et al. (2007) IntAct-open source resource for molecular interaction data. Nucleic Acids Res., 35, D561-D565.
10. Keshava Prasad,T.S. et al. (2009) Human Protein Reference Database-2009 update. Nucleic Acids Res., 37, D767-D772.
11. Krishnamurthy,L. et al. (2003) Pathways database system: An integrated system for biological pathways. Bioinformatics, 19 930-937.
12. Salwinski,L. et al. (2004) The database of interacting proteins: 2004 update. Nucleic Acids Res., 32, D449-D451.
13. Shannon,P. et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504.