Diversity of eukaryotic translational initiation factor eIF4E in protists

Comparative and Functional Genomics

Volumn 2012, Issue , 2012, Pages

  Jagus, Rosemary ^a   Bachvaroff, Tsvetan R ^b   Joshi, Bhavesh ^c   Place, Allen R ^a  

^a UNIVERSITY OF MARYLAND CENTER FOR ENVIRONMENTAL SCIENCE   (United States)

^b SMITHSONIAN ENVIRONMENTAL RESEARCH CENTER   (United States)

^c BridgePath Scientific   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INITIATION FACTOR 4E;

AMOEBOZOA; BABESIA BOVIS; CRYPTOPHYTA; ENTAMOEBA; EVOLUTION; FLAGELLATE; GENE EXPRESSION; GENE SEQUENCE; GENETIC VARIABILITY; GIARDIA LAMBLIA; MIMIVIRUS; NONHUMAN; OPISTHOKONTA; PHYLOGENY; PRIORITY JOURNAL; PROTEIN SYNTHESIS; PROTIST; REVIEW; TRANSLATION INITIATION;

AMOEBOZOA; BABESIA BOVIS; DINOPHYCEAE; EUKARYOTA; FUNGI/METAZOA GROUP; PROROCENTRUM MICANS; PROTISTA;

EID: 84863655793     PISSN: 15316912     EISSN: 15326268     Source Type: Journal    
DOI: 10.1155/2012/134839     Document Type: Review

References (153)

1. Ben-Shem A., GarreaudeLoubresse N., Melnikov S., Jenner L., Yusupova G., Yusupov M., The structure of the eukaryotic ribosome at 3.0 resolution Science 2011 334 1524 1529
2. Korostelev A., Ermolenko D. N., Noller H. F., Structural dynamics of the ribosome Current Opinion in Chemical Biology 2008 12 6 674 683
3. Rivera M. C., Lake J. A., Evidence that eukaryotes and eocyte prokaryotes are immediate relatives Science 1992 257 5066 74 76
4. Rivera M. C., Genomic analyses and the origin of the eukaryotes Chemistry and Biodiversity 2007 4 11 2631 2638 (Pubitemid 350193488)
5. Hernndez G., Vazquez-Pianzola P., Functional diversity of the eukaryotic translation initiation factors belonging to eIF4 families Mechanisms of Development 2005 122 7-8 865 876 (Pubitemid 40961549)
6. Joshi B., Lee K., Maeder D. L., Jagus R., Phylogenetic analysis of eIF4E-family members BMC Evolutionary Biology 2005 5, article 48
7. McGrath C. L., Katz L. A., Genome diversity in microbial eukaryotes Trends in Ecology and Evolution 2004 19 1 32 38 (Pubitemid 38024779)
8. Parfrey L. W., Grant J., Tekle Y. I., Lasek-Nesselquist E., Morrison H. G., Sogin M. L., Patterson D. J., Katz L. A., Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life Systematic Biology 2010 59 5 518 533
9. Moreira D., Lpez-Garca P., The molecular ecology of microbial eukaryotes unveils a hidden world Trends in Microbiology 2002 10 1 31 38 (Pubitemid 34075262)
10. Bangs J. D., Crain P. F., Hashizume T., McCloskey J. A., Boothroyd J. C., Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides The Journal of Biological Chemistry 1992 267 14 9805 9815
11. Marande W., Lpez-Garca P., Moreira D., Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples Environmental Microbiology 2009 11 12 3179 3188
12. Keene J. D., Minireview: global regulation and dynamics of ribonucleic acid Endocrinology 2010 151 4 1391 1397
13. Qin X., Ahn S., Speed T. P., Rubin G. M., Global analyses of mRNA translational control during early Drosophila embryogenesis Genome Biology 2007 8 4, article R63
14. Dacks J. B., Peden A. A., Field M. C., Evolution of specificity in the eukaryotic endomembrane system International Journal of Biochemistry and Cell Biology 2009 41 2 330 340
15. Field M. C., Dacks J. B., First and last ancestors: reconstructing evolution of the endomembrane system with ESCRTs, vesicle coat proteins, and nuclear pore complexes Current Opinion in Cell Biology 2009 21 1 4 13
16. Semler B. L., Waterman M. L., IRES-mediated pathways to polysomes: nuclear versus cytoplasmic routes Trends in Microbiology 2008 16 1 1 5
17. Schrder-Lorenz A., Rensing L., Circadian changes in protein-synthesis rate and protein phosphorylation in cell-free extracts of Gonyaulax polyedra Planta 1987 170 1 7 13
18. Koonin E. V., The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate? Biology Direct 2006 1, article 22
19. Koonin E. V., The origin and early evolution of eukaryotes in the light of phylogenomics Genome Biology 2010 11 5, article 209
20. Martin W., Koonin E. V., Introns and the origin of nucleus-cytosol compartmentalization Nature 2006 440 7080 41 45 (Pubitemid 43336261)
21. Cavalier-Smith T., Intron phylogeny: a new hypothesis Trends in Genetics 1991 7 5 145 148 (Pubitemid 121001913)
22. Cousineau B., Lawrence S., Smith D., Belfort M., Retrotransposition of a bacterial group II intron Nature 2000 404 6781 1018 1021 (Pubitemid 30243599)
23. Lambowitz A. M., Zimmerly S., Mobile group II introns Annual Review of Genetics 2004 38 1 35 (Pubitemid 40013722)
24. Mans B. J., Anantharaman V., Aravind L., Koonin E. V., Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex Cell Cycle 2004 3 12 1612 1637 (Pubitemid 40521416)
25. Aravind L., Koonin E. V., Eukaryote-specific domains in translation initiation factors: implications for translation regulation and evolution of the translation system Genome Research 2000 10 8 1172 1184
26. Benelli D., Londei P., Translation initiation in Archaea: conserved and domain-specific features Biochemical Society Transactions 2011 39 1 89 93
27. Londei P., Evolution of translational initiation: new insights from the archaea FEMS Microbiology Reviews 2005 29 2 185 200 (Pubitemid 40432467)
28. Hernndez G., Was the initiation of translation in early eukaryotes IRES-driven? Trends in Biochemical Sciences 2008 33 2 58 64
29. Sawicka K., Bushell M., Spriggs K. A., Willis A. E., Polypyrimidine- tract-binding protein: a multifunctional RNA-binding protein Biochemical Society Transactions 2008 36 4 641 647
30. Lewis S. M., Holcik M., For IRES trans -acting factors, it is all about location Oncogene 2008 27 8 1033 1035 (Pubitemid 351253194)
31. Semler B. L., Waterman M. L., IRES-mediated pathways to polysomes: nuclear versus cytoplasmic routes Trends in Microbiology 2008 16 1 1 5
32. Komar A. A., Hatzoglou M., Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states Cell Cycle 2011 10 2 229 240
33. Elroy-Stein O., Merrick W. C., Mathews M. B., Sonenberg N., Hershey J. W. B., Translation initiation via cellular internal ribosome entry sites Translational Controlin Biology and Medicine 2007 Cold Spring Harbor, NY, USA Cold Spring Harbor Laboratory Press 155 172
34. Doudna J. A., Sarnow P., Mathews M. B., Sonenberg N., Hershey J. W. B., Translation initiation by viral internal ribosome entry sites Translational Control in Biology and Medicine 2007 Cold Spring Harbor, NY, USA Cold Spring Harbor Laboratory Press 129 154
35. Pacheco A., Martinez-Salas E., Insights into the biology of IRES elements through riboproteomic approaches Journal of Biomedicine and Biotechnology 2010 2010 12
36. Lasda E. L., Blumenthal T., Trans -splicing Wiley Interdisciplinary Reviews 2011 2 417 34
37. Hastings K. E. M., SL trans -splicing: easy come or easy go? Trends in Genetics 2005 21 4 240 247
38. Derelle R., Momose T., Manuel M., Da Silva C., Wincker P., Houliston E., Convergent origins and rapid evolution of spliced leader trans -splicing in Metazoa: insights from the Ctenophora and Hydrozoa RNA 2010 16 4 696 707
39. Bruzik J. P., Maniatis T., Spliced leader RNAs from lower eukaryotes are trans -spliced in mammalian cells Nature 1992 360 6405 692 695 (Pubitemid 23007688)
40. Hernndez G., On the origin of the cap-dependent initiation of translation in eukaryotes Trends in Biochemical Sciences 2009 34 4 166 175
41. Li L., Wang C. C., Identification in the ancient protist Giardia lamblia of two eukaryotic translation initiation factor 4E homologues with distinctive functions Eukaryotic Cell 2005 4 5 948 959 (Pubitemid 40697759)
42. Andrei M. A., Ingelfinger D., Heintzmann R., Achsel T., Rivera-Pomar R., Lhrmann R., A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies RNA 2005 11 5 717 727 (Pubitemid 40594337)
43. Hoyle N. P., Castelli L. M., Campbell S. G., Holmes L. E. A., Ashe M. P., Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies Journal of Cell Biology 2007 179 1 65 74 (Pubitemid 47606684)
44. Rong L., Livingstone M., Sukarieh R., Petroulakis E., Gingras A. C., Crosby K., Smith B., Polakiewicz R. D., Pelletier J., Ferraiuolo M. A., Sonenberg N., Control of eIF4E cellular localization by eIF4E-binding proteins, 4E-BPs RNA 2008 14 7 1318 1327 (Pubitemid 351872189)
45. Goodfellow I. G., Roberts L. O., Eukaryotic initiation factor 4E International Journal of Biochemistry and Cell Biology 2008 40 12 2675 2680
46. Gingras A. C., Raught B., Sonenberg N., eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation Annual Review of Biochemistry 1999 68 913 963 (Pubitemid 29449212)
47. von der Haar T., Gross J. D., Wagner G., McCarthy J. E. G., The mRNA cap-binding protein eIF4E in post-transcriptional gene expression Nature Structural and Molecular Biology 2004 11 6 503 511 (Pubitemid 38691916)
48. Sonenberg N., eIF4E, the mRNA cap-binding protein: from basic discovery to translational research Biochemistry and Cell Biology 2008 86 2 178 183 (Pubitemid 351536498)
49. Topisirovic I., Svitkin Y. V., Sonenberg N., Shatkin A. J., Cap and cap-binding proteins in the control of gene expression Wiley Interdisciplinary Reviews 2011 277 98
50. Marcotrigiano J., Gingras A. C., Sonenberg N., Burley S. K., Co-crystal structure of the messenger RNA5′ cap-binding protein (elF4E) bound to 7-methyl-GDP Cell 1997 89 6 951 961 (Pubitemid 27513521)
51. Matsuo H., Structure of translation factor eIF4E bound to m 7 GDP and interaction with 4E-binding protein Natural Structural Biology 4 717 24
52. Niedzwiecka A., Marcotrigiano J., Stepinski J., Jankowska-Anyszka M., Wyslouch-Cieszynska A., Dadlez M., Gingras A. C., Mak P., Darzynkiewicz E., Sonenberg N., Burley S. K., Stolarski R., Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5′ cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins Journal of Molecular Biology 2002 319 3 615 635 (Pubitemid 34729439)
53. Hernndez G., Altmann M., Sierra J. M., Functional analysis of seven genes encoding eight translation initiation factor 4E (eIF4E) isoforms in Drosophila Mechanisms of Development 122 4 529 543
54. Joshi B., Cameron A., Jagus R., Characterization of mammalian eIF4E-family members European Journal of Biochemistry 2004 271 11 2189 2203 (Pubitemid 38747988)
55. Robalino J., Joshi B., Fahrenkrug S. C., Jagus R., Two zebrafish eIF4E family members are differentially expressed and functionally divergent The Journal of Biological Chemistry 2004 279 11 10532 10541 (Pubitemid 38372664)
56. Ptushkina M., Von der Haar T., Vasilescu S., Frank R., Birkenhger R., McCarthy J. E. G., Cooperative modulation by eIF4G of eIF4E-binding to the mRNA5′ cap in yeast involves a site partially shared by p20 The EMBO Journal 1998 17 16 4798 4808 (Pubitemid 28377180)
57. Pyronnet S., Imataka H., Gingras A. C., Fukunaga R., Hunter T., Sonenberg N., Human eukaryotic translation initiation factor 4G (eIF4G) recruits Mnk1 to phosphorylate eIF4E The EMBO Journal 1999 18 1 270 279 (Pubitemid 29005042)
58. Jankowska-Anyszka M., Lamphear B. J., Aamodt E. J., Harrington T., Darzynkiewicz E., Stolarski R., Rhoads R. E., Multiple isoforms of eukaryotic protein synthesis initiation factor 4E in Caenorhabditis elegans can distinguish between mono- and trimethylated mRNA cap structures The Journal of Biological Chemistry 1998 273 17 10538 10541 (Pubitemid 28227664)
59. Keiper B. D., Lamphear B. J., Deshpande A. M., Jankowska-Anyszka M., Aamodt E. J., Blumenthal T., Rhoads R. E., Functional characterization of five eIF4E isoforms in Caenorhabditis elegans The Journal of Biological Chemistry 2000 275 14 10590 10596 (Pubitemid 30202125)
60. Minshall N., Reiter M. H., Weil D., Standart N., CPEB interacts with an ovary-specific eIF4E and 4E-T in early Xenopus oocytes The Journal of Biological Chemistry 2007 282 52 37389 37401
61. Standart N., Minshall N., Translational control in early development: CPEB, P-bodies and germinal granules Biochemical Society Transactions 2008 36 4 671 676
62. Evsikov A. V., Marn de Evsikova C., Evolutionary origin and phylogenetic analysis of the novel oocyte-specific eukaryotic translation initiation factor 4E in Tetrapoda Development Genes and Evolution 2009 219 2 111 118
63. Cho P. F., Gamberi C., Cho-Park Y., Cho-Park I. B., Lasko P., Sonenberg N., Cap-dependent translational inhibition establishes two opposing morphogen gradients in Drosophila embryos Current Biology 2006 16 20 2035 2041 (Pubitemid 44573835)
64. Dinkova T. D., Keiper B. D., Korneeva N. L., Aamodt E. J., Rhoads R. E., Translation of a small subset of Caenorhabditis elegans mRNAs is dependent on a specific eukaryotic translation initiation factor 4E isoform Molecular and Cellular Biology 2005 25 1 100 113 (Pubitemid 40039803)
65. Baldauf S. L., The deep roots of eukaryotes Science 2003 300 5626 1703 1706 (Pubitemid 36712557)
66. Derelle R., Lang B. F., Rooting the eukaryotic tree with mitochondrial and bacterial proteins Molecular Biology and Evolution 2012 29 4 1277 89
67. Javaux E. J., Knoll A. H., Walter M. R., Morphological and ecological complexity in early eukaryotic ecosystems Nature 2001 412 6842 66 69 (Pubitemid 32851509)
68. Keeling P. J., Chromalveolates and the evolution of plastids by secondary endosymbiosis Journal of Eukaryotic Microbiology 2009 56 1 1 8
69. Keeling P. J., Diversity and evolutionary history of plastids and their hosts American Journal of Botany 2004 91 10 1481 1493 (Pubitemid 43193714)
70. Keeling P. J., The endosymbiotic origin, diversification and fate of plastids Philosophical Transactions of the Royal Society B 2010 365 1541 729 748
71. Hwan S. Y., Hackett J. D., Van Dolah F. M., Nosenko T., Lidie K. L., Bhattacharya D., Tertiary endosymbiosis driven genome evolution in dinoflagellate algae Molecular Biology and Evolution 2005 22 5 1299 1308 (Pubitemid 40577768)
72. Delwiche C. F., Tracing the thread of plastid diversity through the tapestry of life American Naturalist 1999 154 4 S164 S177
73. Sato S., The apicomplexan plastid and its evolution Cellular and Molecular Life Sciences 2011 68 8 1285 1296
74. Fernndez Robledo J. A., The search for the missing link: a relic plastid in Perkinsus ? International Journal for Parasitology 2011 41 1217 1229
75. Keeling P. J., The tree of eukaryotes Trends in Ecology and Evolution 2005 20 670 676 (Pubitemid 41661330)
76. Adl S. M., Diversity, nomenclature, and taxonomy of protists Systematics Biology 684 689
77. Lane C. E., Archibald J. M., The eukaryotic tree of life: endosymbiosis takes its TOL Trends in Ecology and Evolution 2008 23 5 268 275 (Pubitemid 351626208)
78. King N., The unicellular ancestry of animal development Developmental Cell 2004 7 3 313 325 (Pubitemid 39236435)
79. Cavalier-Smith T., Eukaryote kingdoms: seven or nine? BioSystems 1981 14 3-4 461 481
80. Cavalier-Smith T., The phagotrophic origin of eukaryotes and phylogenetic classification on protozoa International Journal of Systematic and Evolutionary Microbiology 2002 52 2 297 354 (Pubitemid 34262632)
81. Cavalier-Smith T., A revised six-kingdom system of life Biological Reviews of the Cambridge Philosophical Society 1998 73 3 203 266 (Pubitemid 28474673)
82. Cavalier-Smith T., Chao E. E. Y., Phylogeny and classification of phylum Cercozoa (Protozoa) Protist 2003 154 3-4 341 358 (Pubitemid 37425136)
83. Archibald J. M., Keeling P. J., Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens Journal of Eukaryotic Microbiology 2004 51 1 113 118 (Pubitemid 38231430)
84. Adam R. D., Biology of Giardia lamblia Clinical Microbiology Reviews 2001 14 3 447 475 (Pubitemid 32642745)
85. Jerlstrm-Hultqvist J., Franzén O., Ankarklev J., Xu F., Nohnkov E., Andersson J. O., Svrd S. G., Andersson B., Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate BMC Genomics 2010 11 1, article 543
86. Adam R. D., The Giardia lamblia genome International Journal for Parasitology 2000 30 4 475 484 (Pubitemid 30145476)
87. Hausmann S., Altura M. A., Witmer M., Singer S. M., Elmendorf H. G., Shuman S., Yeast-like mRNA capping apparatus in Giardia lamblia The Journal of Biological Chemistry 2005 280 13 12077 12086
88. Li L., Wang C. C., Capped mRNA with a single nucleotide leader is optimally translated in a primitive eukaryote, Giardia lamblia The Journal of Biological Chemistry 2004 279 15 14656 14664 (Pubitemid 38618854)
89. Niu X., Hartshorne T., He X. Y., Agabian N., Characterization of putative small nuclear RNAs from Giardia lamblia Molecular and Biochemical Parasitology 1994 66 1 49 57 (Pubitemid 24250052)
90. Liang X. H., Haritan A., Uliel S., Michaeli S., Trans and cis splicing in trypanosomatids: mechanism, factors, and regulation Eukaryotic Cell 2003 2 5 830 840 (Pubitemid 37298696)
91. Douris V., Telford M. J., Averof M., Evidence for multiple independent origins of trans -splicing in Metazoa Molecular Biology and Evolution 2010 27 3 684 693
92. Keller M., Tessier L. H., Chan R. L., Weil J. H., Imbault P., In Euglena, spliced-leader RNA (SL-RNA) and 5S rRNA genes are tandemly repeated Nucleic Acids Research 1992 20 7 1711 1715
93. Blumenthal T., Trans -splicing and polycistronic transcription in Caenorhabditis elegans Trends in Genetics 1995 11 4 132 136
94. Bangs J. D., Crain P. F., Hashizume T., McCloskey J. A., Boothroyd J. C., Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides The Journal of Biological Chemistry 1992 267 14 9805 9815
95. Perry K. L., Watkins K. P., Agabian N., Trypanosome mRNAs have unusual cap 4' structures acquired by addition of a spliced leader Proceedings of the National Academy of Sciences of the United States of America 1987 84 23 8190 8194 (Pubitemid 18033443)
96. Clayton C. E., Life without transcriptional control? From fly to man and back again The EMBO Journal 2002 21 8 1881 1888 (Pubitemid 34437185)
97. Haile S., Papadopoulou B., Developmental regulation of gene expression in trypanosomatid parasitic protozoa Current Opinion in Microbiology 2007 10 6 569 577 (Pubitemid 350180594)
98. Queiroz R., Benz C., Fellenberg K., Hoheisel J. D., Clayton C., Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons BMC Genomics 2009 10, article 1471 495
99. Yoffe Y., Zuberek J., Lerer A., Lewdorowicz M., Stepinski J., Altmann M., Darzynkiewicz E., Shapira M., Binding specificities and potential roles of isoforms of eukaryotic initiation factor 4E in Leishmania Eukaryotic Cell 2006 5 12 1969 1979 (Pubitemid 44956809)
100. Freire E. R., Dhalia R., Moura D. M. N., Da Costa Lima T. D., Lima R. P., Reis C. R. S., Hughes K., Figueiredo R. C. B. Q., Standart N., Carrington M., De Melo Neto O. P., The four trypanosomatid eIF4E homologues fall into two separate groups, with distinct features in primary sequence and biological properties Molecular and Biochemical Parasitology 2011 176 1 25 36
101. Marcotrigiano J., Gingras A. C., Sonenberg N., Burley S. K., Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of elF4G Molecular Cell 1999 3 6 707 716 (Pubitemid 29323049)
102. Dhalia R., Reis C. R. S., Freire E. R., Rocha P. O., Katz R., Muniz J. R. C., Standart N., De Melo Neto O. P., Translation initiation in Leishmania major: characterisation of multiple eIF4F subunit homologues Molecular and Biochemical Parasitology 2005 140 1 23 41 (Pubitemid 40203412)
103. Hou Y., Lin S., Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes PLoS ONE 2009 4 9
104. Moreno Daz de la Espina S., Alverca E., Cuadrado A., Franca S., Organization of the genome and gene expression in a nuclear environment lacking histones and nucleosomes: the amazing dinoflagellates European Journal of Cell Biology 2005 84 2-3 137 149 (Pubitemid 40353058)
105. Bachvaroff T. R., Place A. R., From stop to start: tandem gene arrangement, copy number and Trans -splicing sites in the dinoflagellate Amphidinium carterae PLoS ONE 2008 3 8
106. Mittag M., Lee D. H., Hastings J. W., Circadian expression of the luciferin-binding protein correlates with the binding of a protein to the 3′ untranslated region of its mRNA Proceedings of the National Academy of Sciences of the United States of America 1994 91 12 5257 5261
107. Fagan T., Morse D., Hastings J. W., Circadian synthesis of a nuclear-encoded chloroplast glyceraldehyde-3- phosphate dehydrogenase in the dinoflagellate Gonyaulax polyedra is translationally controlled Biochemistry 1999 38 24 7689 7695
108. Brunelle S. A., Van Dolah F. M., Post-transcriptional regulation of S-Phase genes in the dinoflagellate, Karenia brevis Journal of Eukaryotic Microbiology 2011 58 4 373 382
109. Schrder-Lorenz A., Rensing L., Circadian changes in protein-synthesis rate and protein phosphorylation in cell-free extracts of Gonyaulax polyedra Planta 1987 170 1 7 13
110. Ten Lohuis M. R., Miller D. J., Light-regulated transcription of genes encoding peridinin chlorophyll a proteins and the major intrinsic light-harvesting complex proteins in the dinoflagellate Amphidinium carterae hulburt (Dinophycae): changes in cytosine methylation accompany photoadaptation Plant Physiology 1998 117 1 189 196 (Pubitemid 128652792)
111. Rossini C., Taylor W., Fagan T., Hastings J. W., Lifetimes of mRNAs for clock-regulated proteins in a dinoflagellate Chronobiology International 2003 20 6 963 976 (Pubitemid 37517511)
112. Lee F. W. F., Morse D., Lo S. C. L., Identification of two plastid proteins in the dinoflagellate Alexandrium affine that are substantially down-regulated by nitrogen-depletion Journal of Proteome Research 2009 8 11 5080 5082
113. Akimoto H., Kinumi T., Ohmiya Y., Circadian rhythm of a TCA cycle enzyme is apparently regulated at the translational level in the dinoflagellate Lingulodinium polyedrum Journal of Biological Rhythms 2005 20 6 479 489 (Pubitemid 41677390)
114. Morse D., Milos P. M., Roux E., Hastings J. W., Circadian regulation of bioluminescence in Gonyaulax involves translational control Proceedings of the National Academy of Sciences of the United States of America 1989 86 1 172 176
115. Van Dolah F. M., Lidie K. B., Morey J. S., Brunelle S. A., Ryan J. C., Monroe E. A., Haynes B. L., Microarray analysis of diurnal- and circadian-regulated genes in the Florida red-tide dinoflagellate Karenia brevis (Dinophyceae) Journal of Phycology 2007 43 4 741 752 (Pubitemid 47196282)
116. Moustafa A., Evans A. N., Kulis D. M., Hackett J. D., Erdner D. L., Anderson D. M., Bhattacharya D., Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence PLoS ONE 2010 5 3
117. Lidie K. B., van Dolah F. M., Spliced leader RNA-mediated trans -splicing in a dinoflagellate, Karenia brevis Journal of Eukaryotic Microbiology 2007 54 5 427 435 (Pubitemid 47512290)
118. Zhang H., Hou Y., Miranda L., Campbell D. A., Sturm N. R., Gaasterland T., Lin S., Spliced leader RNA trans -splicing in dinoflagellates Proceedings of the National Academy of Sciences of the United States of America 2007 104 11 4618 4623 (Pubitemid 47186274)
119. Bachvaroff T. R., Place A. R., Coats D. W., Expressed sequence tags from Amoebophrya sp. infecting Karlodinium veneficum: comparing host and parasite sequences Journal of Eukaryotic Microbiology 2009 56 6 531 541
120. Xu X., Vatsyayan J., Gao C., Bakkenist C. J., Hu J., Sumoylation of eIF4E activates mRNA translation EMBO Reports 2010 11 4 299 304
121. Xu X., Vatsyayan J., Gao C., Bakkenist C. J., Hu J., HDAC2 promotes eIF4E sumoylation and activates mRNA translation gene specifically The Journal of Biological Chemistry 2010 285 24 18139 18143
122. Bachvaroff T. R., Handy S. M., Place A. R., Delwiche C. F., Alveolate phylogeny inferred using concatenated ribosomal proteins Journal of Eukaryotic Microbiology 2011 58 3 223 233
123. Robledo J. A. F., Courville P., Cellier M. F. M., Vasta G. R., Gene organization and expression of the divalent cation transporter Nramp in the protistan parasite Perkinsus marinus Journal of Parasitology 2004 90 5 1004 1014 (Pubitemid 40247379)
124. Hearne J. L., Pitula J. S., Identification of two spliced leader RNA transcripts from Perkinsus marinus Journal of Eukaryotic Microbiology 2011 58 3 266 268
125. Zhang H., Campbell D. A., Sturm N. R., Dungan C. F., Lin S., Spliced leader RNAs, mitochondrial gene frameshifts and multi-protein phylogeny expand support for the genus Perkinsus as a unique group of alveolates PLoS ONE 2011 6 5
126. Cavalier-Smith T., Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree Journal of Eukaryotic Microbiology 1999 46 4 347 366 (Pubitemid 29395704)
127. Cavalier-Smith T., Beaton M. J., The skeletal function of non-genic nuclear DNA: new evidence from ancient cell chimaeras Genetica 1999 106 1-2 3 13 (Pubitemid 30049228)
128. Cavalier-Smith T., Membrane heredity and early chloroplast evolution Trends in Plant Science 2000 5 4 174 182 (Pubitemid 30192275)
129. Douglas S. E., Murphy C. A., Spencer D. F., Grayt M. W., Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes Nature 1991 350 6314 148 151 (Pubitemid 21912183)
130. Douglas S. E., Eukaryote-eukaryote endosymbioses: insights from studies of a cryptomonad alga BioSystems 1992 28 13 57 68 (Pubitemid 23043823)
131. Maier U. G., Hofmann C. J. B., Eschbach S., Wolters J., Igloi G. L., Demonstration of nucleomorph-encoded eukaryotic small subunit ribosomal RNA in cryptomonads Molecular and General Genetics 1991 230 1-2 155 160
132. Cavalier-Smith T., Nucleomorphs: enslaved algal nuclei Current Opinion in Microbiology 2002 5 6 612 619 (Pubitemid 35434553)
133. Douglas S., Zauner S., Fraunholz M., Beaton M., Penny S., Deng L. T., Wu X., Reith M., Cavalier-Smith T., Maier U. G., The highly reduced genome of an enslaved algal nucleus Nature 2001 410 6832 1091 1096 (Pubitemid 32391039)
134. Maier U. G., Douglas S. E., Cavalier-Smith T., The nucleomorph genomes of cryptophytes and chlorarachniophytes Protist 2000 151 2 103 109 (Pubitemid 30647873)
135. Zauner S., Fraunholz M., Wastl J., Penny S., Beaton M., Cavalier-Smith T., Maier U. G., Douglas S., Chloroplast protein and centrosomal genes, a tRNA intron, and odd telomeres in an unusually compact eukaryotic genome, the cryptomonad nucleomorph Proceedings of the National Academy of Sciences of the United States of America 2000 97 1 200 205 (Pubitemid 30055808)
136. McFadden G. I., Gilson P. R., Douglas S. E., The photosynthetic endosymbiont in cryptomonad cells produces both chloroplast and cytoplasmic-type ribosomes Journal of Cell Science 1994 107 2 649 657 (Pubitemid 24072896)
137. Kapp L. D., Lorsch J. R., The molecular mechanics of eukaryotic translation Annual Review of Biochemistry 2004 73 657 704 (Pubitemid 39050383)
138. Zoll W. L., Horton L. E., Komar A. A., Hensold J. O., Merrick W. C., Characterization of mammalian eIF2A and identification of the yeast homolog The Journal of Biological Chemistry 2002 277 40 37079 37087
139. Matsuzaki M., Misumi O., Shin-I T., Maruyama S., Takahara M., Miyagishima S. Y., Mori T., Nishida K., Yagisawa F., Nishida K., Yoshida Y., Nishimura Y., Nakao S., Kobayashi T., Momoyama Y., Higashiyama T., Minoda A., Sano M., Nomoto H., Oishi K., Hayashi H., Ohta F., Nishizaka S., Haga S., Miura S., Morishita T., Kabeya Y., Terasawa K., Suzuki Y., Ishii Y., Asakawa S., Takano H., Ohta N., Kuroiwa H., Tanaka K., Shimizu N., Sugano S., Sato N., Nozaki H., Ogasawara N., Kohara Y., Kuroiwa T., Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D Nature 2004 428 6983 653 657 (Pubitemid 38524807)
140. Ohta N., Sato N., Nozaki H., Kuroiwa T., Analysis of the cluster of ribosomal protein genes in the plastid genome of a unicellular red alga Cyanidioschyzon merolae: translocation of the str cluster as an early event in the rhodophyte-chromophyte lineage of plastid evolution Journal of Molecular Evolution 1997 45 6 688 695
141. Altmann M., Muller P. P., Wittmer B., Ruchti F., Lanker S., Trachsel H., A Saccharomyces cerevisiae homologue of mammalian translation initiation factor 4B contributes to RNA helicase activity The EMBO Journal 1993 12 10 3997 4003 (Pubitemid 23282775)
142. Gould S. B., Ariadne's thread: guiding a protein across five membranes in cryptophytes Journal of Phycology 2008 44 1 23 26 (Pubitemid 351225096)
143. Joshi B., Robalino J., Schott E. J., Jagus R., Yeast knockout-and-rescue system for identification of eIF4E-family members possessing eIF4E-activity BioTechniques 2002 33 2 392 401 (Pubitemid 34856427)
144. Vasilescu S., Ptushkina M., Linz B., Mller P. P., McCarthy J. E. G., Mutants of eukaryotic initiation factor eIF-4E with altered mRNA cap binding specificity reprogram mRNA selection by ribosomes in Saccharomyces cerevisiae The Journal of Biological Chemistry 1996 271 12 7030 7037 (Pubitemid 26104137)
145. La Scola B., Marrie T. J., Auffray J. P., Raoult D., Mimivirus in pneumonia patients Emerging Infectious Diseases 2005 11 3 449 452 (Pubitemid 40315733)
146. Raoult D., Audic S., Robert C., Abergel C., Renesto P., Ogata H., La Scola B., Suzan M., Claverie J. M., The 1.2-megabase genome sequence of Mimivirus Science 2004 306 5700 1344 1350 (Pubitemid 39532506)
147. Raoult D., La Scola B., Birtles R., The discovery and characterization of mimivirus, the largest known virus and putative pneumonia agent Clinical Infectious Diseases 2007 45 1 95 102 (Pubitemid 46984624)
148. Suzan-Monti M., La Scola B., Raoult D., Genomic and evolutionary aspects of Mimivirus Virus Research 2006 117 1 145 155
149. Claverie J. M., Abergel C., Mimivirus and its virophage Annual Review of Genetics 2009 43 49 66
150. Claverie J. M., Abergel C., Ogata H., Mimivirus Current Topics in Microbiology and Immunology 2009 328 89 121
151. Benarroch D., Smith P., Shuman S., Characterization of a trifunctional mimivirus mRNA capping enzyme and crystal structure of the RNA triphosphatase domain Structure 2008 16 4 501 512 (Pubitemid 351458698)
152. Benarroch D., Qiu Z. R., Schwer B., Shuman S., Characterization of a mimivirus RNA cap guanine-N2 methyltransferase RNA 2009 15 4 666 674
153. Claverie J. M., Abergel C., Mimivirus: the emerging paradox of quasi-autonomous viruses Trends in Genetics 2010 26 10 431 437