Lifetimes of mRNAs for Clock-Regulated Proteins in a Dinoflagellate

Chronobiology International

Volumn 20, Issue 6, 2003, Pages 963-976

  Rossini, Carlos ^a   Taylor, Walter ^b   Fagan, Thomas ^c   Hastings, J Woodland ^c  

^a Fermentas GmbH   (Germany)

^b Applied Biosystems Framingham   (United States)

^c HARVARD UNIVERSITY   (United States)

Author keywords

Bioluminescence; Circadian clock; Dinoflagellate; mRNA lifetimes; RNA polymerase II; Thiolutin

Indexed keywords

BINDING PROTEIN; ENZYME INHIBITOR; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; LUCIFERASE; LUCIFERIN; MESSENGER RNA; PROTEIN; RNA POLYMERASE II; THIOLUTIN;

ARTICLE; BIOLUMINESCENCE; CIRCADIAN RHYTHM; DINOFLAGELLATE; LINGULODINIUM POLYEDRUM; NONHUMAN; NORTHERN BLOTTING; RNA TRANSLATION;

ANIMALS; BIOLOGICAL CLOCKS; CALCIUM-BINDING PROTEINS; CIRCADIAN RHYTHM; DINOFLAGELLIDA; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASES; LUCIFERASES; LUMINESCENT MEASUREMENTS; PROTOZOAN PROTEINS; PYRROLIDINONES; RNA POLYMERASE II; RNA STABILITY; RNA, MESSENGER;

DINOPHYCEAE; GONYAULAX; GONYAULAX POLYEDRA; LINGULODINIUM; LINGULODINIUM POLYEDRUM;

EID: 0344305579     PISSN: 07420528     EISSN: None     Source Type: Journal    
DOI: 10.1081/CBI-120025248     Document Type: Article

References (48)

1. Abrahao-Neto, J., Rossini, C. H. B., Elgogary, S., Henriquesilva, F., Crivellaro, O., Eldorry, H. (1995). Mitochondrial functions mediate cellulase gene expression in Trichoderma reesei. Biochemistry 34:10456-10462.
2. Allada, R., Emery, P., Takahashi, J. S., Rosbash, M. (2001). Stopping time: the genetics of fly and mouse circadian clocks. Annu. Rev. Neurosci. 24:1091-1119.
3. Broda, H., Gooch, V. D., Taylor, W., Aiuto, N., Hastings, J. W. (1986). Acquisition of circadian bioluminescence data in Gonyaulax and an effect of the measurement procedure on the period of the rhythm. J. Biol. Rhythm 1:251-263.
4. Dunlap, J. C. (1999). Molecular bases for circadian clocks. Cell 96:271-290.
5. Dunlap, J. C., Taylor, W., Hastings, J. W. (1980). The effects of protein synthesis inhibitors on the Gonyaulax clock I: phase-shifting effects of cycloheximide. J. Comp. Physiol. 138:1-8.
6. Eckert, R. (1965). Bioelectric control of bioluminescence in the dinoflagellate Noctiluca. Science 147:1140-1145.
7. Fagan, T., Morse, D., Hastings, J. W. (1999). Circadian synthesis of a nuclear-encoded chloroplast glyceraldehyde-3-phosphate dehydrogenase in the dinoflagellate Gonyaulax polyedra is translationally controlled. Biochemistry 38:7689-7695.
8. Guillard, R. R. L., Ryther, J. H. (1962). Studies on marine planktonic diatoms. I. Cyclotellanana Hustedt and Detonula confervacea (Cleve). Can. J. Microbiol. 8:229-239.
9. Hastings, J. W. (2001). Cellular and molecular mechanisms of circadian regulation in the unicellular dinoflagellate Gonyaulax polyedra. In: Takahashi, J., Turek, F., Moore, R. Y., eds. Handbook of Behavioral Neurobiology. vol 12: Circadian Clocks. New York, NY: Plenum Press, 321-334.
10. Herrick, D., Parker, R., Jacobson, A. (1990). Identification and comparison of stable and unstable messenger-RNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 10:2269-2284.
11. Ishiura, M., Kutsuna, S., Aoki, S., Iwasaki, H., Andersson, C. R., Tanabe, A., Golden, S. S., Johnson, C. H., Kondo, T. (1998). Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281:1519-1523.
12. Iwasaki, H., Kondo, T. (2000). The current state and problems of circadian clock studies in cyanobacteria. Plant Cell Physiol. 41:1013-1020.
13. Jacklet, J. W. (1977). Neuronal circadian rhythm: phase shifting by a protein synthesis inhibitor. Science 198:69-71.
14. Jacklet, J. W. (1989). Circadian neuronal oscillators. In: Jacklet, J. W., ed. Neuronal and Cellular Oscillators. New York: Marcel Dekker, Inc., 483-527.
15. Jimenez, A., Tipper, D. J., Davies, J. (1973). Mode of action of thiolutin, an inhibitor of macromolecular synthesis in Saccharomyces cerevisiae. Antimicrob. Agents Chemother. 3:729-738.
16. Johnson, C. H., Roeber, J., Hastings, J. W. (1984). Circadian changes in enzyme concentration account for rhythm of enzyme activity in Gonyaulax. Science 223:1428-1430.
17. Karakashian, M. W., Hastings, J. W. (1962). The inhibition of a biological clock by actinomycin D. Proc. Natl Acad. Sci. USA 48:2130-2137.
18. Karakashian, M. W., Hastings, J. W. (1963). The effects of inhibitors of macromolecular biosynthesis upon the persistent rhythm of luminescence in Gonyaulax. J. Gen. Physiol. 47:1-12.
19. Khalsa, S. B. S., Whitmore, D., Bogart, B., Block, G. D. (1996). Evidence for a central role of transcription in the timing mechanism of a circadian clock. Am. J. Physiol.-Cell Ph. 271:C1646-C1651.
20. Kloppstech, K. (1985). Diurnal and circadian rhythmicity in the expression of light-induced plant nuclear messenger RNA. Planta 165:502-506.
21. Lee, D.-H., Mittag, M., Sczekan, S., Morse, D., Hastings, J. W. (1993). Molecular cloning and genomic organization of a gene for luciferin-binding protein from the dinoflagellate Gonyaulax polyedra. J. Biol. Chem. 268:8842-8850.
22. Li, L., Hong, R., Hastings, J. W. (1997). Three functional luciferase domains in a single polypeptide chain. Proc. Natl Acad. Sci. USA 94:8954-8958.
23. Loros, J. J., Dunlap, J. C. (1991). Neurospora crassa clock-controlled genes are regulated at the level of transcription. Mol. Cell. Biol. 11:558-563.
24. Loros, J. J., Dunlap, J. C. (2001). Genetic and molecular analysis of circadian rhythms in Neurospora. Annu. Rev. Physiol. 63:757-794.
25. Loros, J. J., Denome, S. A., Dunlap, J. C. (1989). Molecular cloning of genes under control of the circadian clock in Neurospora. Science 243:385-388.
26. Markovic, P. Roenneberg, T., Morse, D. (1996). Phased protein synthesis at several circadian times does not change protein levels in Gonyaulax. J. Biol. Rhythm 11:57-67.
27. McClung, C. R. (2001). Circadian rhythms in plants. Annu. Rev. Plant Physiol. Plant Molec. Biol. 52:139-162.
28. Milos, P., Morse, D., Hastings, J. W. (1990). Circadian control over synthesis of many Gonyaulax proteins is at the translational level. Naturwissenschaften 77:87-89.
29. Mittag, M. (1996). Conserved circadian elements in phylogenetically diverse algae. Proc. Natl Acad. Sci. USA 91:5257-5261.
30. Mittag, M., Lee, D.-H., Hastings, J. W. (1994). Circadian expression of the luciferin-binding protein correlates with the binding of a protein to its 3′ untranslated region. Proc. Natl Acad. Sci. USA 91:5257-5261.
31. Mittag, M., Eckerskorn, C., Strupat, K., Hastings, J. W. (1997). Differential translational initiation of lbp mRNA is caused by a small 5′ open reading frame. FEBS Letts 411:245-250.
32. Mittag, M., Li, L., Hastings, J. W. (1998). The mRNA level of the circadian regulated Gonyaulax luciferase remains constant over the cycle. Chronobiol. Int. 15:93-98.
33. Morse, D. M., Pappenheimer, A. M., Hastings, J. W. (1989a). Role of a luciferin-binding protein in the circadian bioluminescent reaction of Gonyaulax polyedra. J. Biol. Chem. 264:11822-11826.
34. Morse, D., Milos, P. M., Roux, E., Hastings, J. W. (1989b). Circadian regulation of bioluminescence in Gonyaulax involves translational control. Proc. Natl Acad. Sci. USA 86:172-176.
35. Nagy, F., Kay, S. A., Chua, N. H. (1988). A circadian clock regulates transcription of the wheat Cab-1 gene. Genes Dev. 2:376-382.
36. Nicolas, M.-T., Nicolas, G., Johnson, C. H., Bassot, J.-M., Hastings, J. W. (1987). Characterization of the bioluminescent organelles in Gonyaulax polyedra (dinoflagellates) after fast-freeze fixation and antiluciferase immunogold staining. J. Cell Biol. 105:723-735.
37. Okamoto, O. K., Hastings, J. W. (2003). Novel dinoflagellate clock-related genes identified through microarray analysis. J. Phycol. 39:1-9.
38. Okamura, H., Yamaguchi, S., Yagita, K. (2002). Molecular machinery of the circadian clock in mammals. Cell Tissue Res. 309:47-56.
39. Parker, R., Herrick, D., Peltz, S. W., Jacobson, A. (1991). Measurement of messenger-RNA decay-rates in Saccharomyces cerevisiae. Meth. Enzymol. 194:415-423.
40. Raju, U., Koumenis, C., Nunez-Regueiro, M., Eskin, A. (1991). Alteration of the phase and period of a circadian oscillator by a reversible transcription inhibitor. Science 253:673-675.
41. Reppert, S. M., Weaver, D. R. (2001). Molecular analysis of mammalian circadian rhythms. Annu. Rev. Physiol. 63:647-676.
42. Roenneberg, T., Morse, D. (1993). Two circadian oscillators in one cell. Nature 362:362-364.
43. Sambrook, J., Fritsch, E. F., Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor: Cold Spring Harbor Press.
44. Taylor, W. R., Hastings, J. W. (1982). Minute-long pulses of anisomycin phase-shift the biological clock in Gonyaulax by hours. Naturwissenschaften 69:94-96.
45. Taylor, W. R., Dunlap, J. C., Hastings, J. W. (1982). Inhibitors of protein synthesis on 80s ribosomes phase shift the Gonyaulax clock. J. Exp. Biol. 97:121-136.
46. Waltenberger, H., Schneid, C., Grosch, J. O., Bareiss, A., Mittag, M. (2001). Identification of target mRNAs for the clock-controlled RNA-binding protein Chlamy 1 from Chlamydomonas reinhardtii. Mol. Genet. Genom. 265:180-188.
47. Wang, Y. L., Liu, C. L., Storey, J. D., Tibshirani, R. J., Herschlag, D., Brown, P. O. (2002). Precision and functional specificity in mRNA decay. Proc. Natl Acad. Sci. USA 99:5860-5865.
48. Young, M. W., Kay, S. A. (2001). Time zones: a comparative genetics of circadian clocks. Nat. Rev. Genet. 2:702-715.