-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 2001;409(6822):860-921.
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
2
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, et al. The sequence of the human genome. Science 2001;291(5507):1304-2351.
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1304-2351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
-
3
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, et al. Initial sequencing and comparative analysis of the mouse genome. Nature 2002;420(6915):520-562.
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
-
4
-
-
7444260846
-
The ENCODE (ENCyclopedia of DNA elements) project
-
Consortium TEP. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004;306(5696):636-640.
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 636-640
-
-
Consortium, T.E.P.1
-
5
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S, et al. The transcriptional landscape of the mammalian genome. Science 2005;309(5740):1559-1563.
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
-
6
-
-
0035825662
-
Functional annotation of a full-length mouse cDNA collection
-
Kawai J, Shinagawa A, Shibata K, et al. Functional annotation of a full-length mouse cDNA collection. Nature 2001;409(6821):685-690.
-
(2001)
Nature
, vol.409
, Issue.6821
, pp. 685-690
-
-
Kawai, J.1
Shinagawa, A.2
Shibata, K.3
-
7
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
Okazaki Y, Furuno M, Kasukawa T, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 2002;420(6915):563-573.
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
-
8
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S, Tomaru Y, Kasukawa T, et al. Antisense transcription in the mammalian transcriptome. Science 2005;309(5740):1564-1566.
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
-
9
-
-
0347363608
-
Interrogating the transcriptome
-
Ruan Y, Le Ber P, Ng HH, Liu ET. Interrogating the transcriptome. Trends Biotechnol 2004;22(1):23-30.
-
(2004)
Trends Biotechnol
, vol.22
, Issue.1
, pp. 23-30
-
-
Ruan, Y.1
Le Ber, P.2
Ng, H.H.3
Liu, E.T.4
-
10
-
-
9144233601
-
Cap analysis gene expression for highthroughput analysis of transcriptional starting point and identification of promoter usage
-
Shiraki T, Kondo S, Katayama S, et al. Cap analysis gene expression for highthroughput analysis of transcriptional starting point and identification of promoter usage. Proc Natl Acad Sci USA 2003;100(26):15776-15781.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.26
, pp. 15776-15781
-
-
Shiraki, T.1
Kondo, S.2
Katayama, S.3
-
11
-
-
20844463584
-
Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation
-
Ng P, Wei CL, Sung WK, et al. Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat Methods 2005;2(2):105-111.
-
(2005)
Nat Methods
, vol.2
, Issue.2
, pp. 105-111
-
-
Ng, P.1
Wei, C.L.2
Sung, W.K.3
-
12
-
-
23644460630
-
Tag-based approaches for transcriptome research and genome annotation
-
Harbers M, Carninci P. Tag-based approaches for transcriptome research and genome annotation. Nat Methods 2005;2(7):495-502.
-
(2005)
Nat Methods
, vol.2
, Issue.7
, pp. 495-502
-
-
Harbers, M.1
Carninci, P.2
-
13
-
-
0031588566
-
High efficiency selection of full-length cDNA by improved biotinylated cap trapper
-
Carninci P, Westover A, Nishiyama Y, et al. High efficiency selection of full-length cDNA by improved biotinylated cap trapper. DNA Res 1997;4(1): 61-66.
-
(1997)
DNA Res
, vol.4
, Issue.1
, pp. 61-66
-
-
Carninci, P.1
Westover, A.2
Nishiyama, Y.3
-
14
-
-
0035417016
-
Balanced-size and long size cloning of full-length, cap-trapped cDNAs into vectors of the novel ë-FLC family allows enhanced gene discovery rate and functional analysis
-
Carninci P, Shibata Y, Hayatsu N, et al. Balanced-size and long size cloning of full-length, cap-trapped cDNAs into vectors of the novel ë-FLC family allows enhanced gene discovery rate and functional analysis. Genomics 2001;77(1-2):79-90.
-
(2001)
Genomics
, vol.77
, Issue.1-2
, pp. 79-90
-
-
Carninci, P.1
Shibata, Y.2
Hayatsu, N.3
-
15
-
-
0033791308
-
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes
-
Carninci P, Shibata Y, Hayatsu N, et al. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res 2000;10(10):1617-1630.
-
(2000)
Genome Res
, vol.10
, Issue.10
, pp. 1617-1630
-
-
Carninci, P.1
Shibata, Y.2
Hayatsu, N.3
-
16
-
-
0036244758
-
Extra-long first-strand cDNA synthesis
-
Carninci P, Shiraki T, Mizuno Y, Muramatsu M, Hayashizaki Y. Extra-long first-strand cDNA synthesis. Biotechniques 2002;32(5):984-985.
-
(2002)
Biotechniques
, vol.32
, Issue.5
, pp. 984-985
-
-
Carninci, P.1
Shiraki, T.2
Mizuno, Y.3
Muramatsu, M.4
Hayashizaki, Y.5
-
17
-
-
0034996801
-
Cloning full-length, cap-trapperselected cDNAs by using the single-strand linker ligation method
-
Shibata Y, Carninci P, Watahiki A, et al. Cloning full-length, cap-trapperselected cDNAs by using the single-strand linker ligation method. Biotechni ques 2001;30(6):1250-1254.
-
(2001)
Biotechni Ques
, vol.30
, Issue.6
, pp. 1250-1254
-
-
Shibata, Y.1
Carninci, P.2
Watahiki, A.3
-
18
-
-
0033664561
-
RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer
-
Shibata K, Itoh M, Aizawa K, et al. RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res 2000;10(11):1757-1771.
-
(2000)
Genome Res
, vol.10
, Issue.11
, pp. 1757-1771
-
-
Shibata, K.1
Itoh, M.2
Aizawa, K.3
-
19
-
-
1542350617
-
A new approach to the distribution and storage of genetic resources
-
Hayashizaki Y, Kawai J. A new approach to the distribution and storage of genetic resources. Nat Rev Genet 2004;5(3):223-228.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.3
, pp. 223-228
-
-
Hayashizaki, Y.1
Kawai, J.2
-
21
-
-
0035956926
-
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 fulllength enriched mouse cDNA arrays
-
Miki R, Kadota K, Bono H, et al. Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 fulllength enriched mouse cDNA arrays. Proc Natl Acad Sci USA 2001;98(5): 2199-2204.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.5
, pp. 2199-2204
-
-
Miki, R.1
Kadota, K.2
Bono, H.3
-
22
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 2003;72:291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
23
-
-
0242317345
-
Complex controls: The role of alternative promoters in mammalian genomes
-
Landry JR, Mager DL, Wilhelm BT. Complex controls: the role of alternative promoters in mammalian genomes. Trends Genet 2003;19(11):640-648.
-
(2003)
Trends Genet
, vol.19
, Issue.11
, pp. 640-648
-
-
Landry, J.R.1
Mager, D.L.2
Wilhelm, B.T.3
-
24
-
-
0035021811
-
Identification and characterization of the potential promoter regions of 1031 kinds of human genes
-
Suzuki Y, Tsunoda T, Sese J, et al. Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res 2001;11(5):677-684.
-
(2001)
Genome Res
, vol.11
, Issue.5
, pp. 677-684
-
-
Suzuki, Y.1
Tsunoda, T.2
Sese, J.3
-
25
-
-
0036682099
-
A transcription factor response element for gene expression during circadian night
-
Ueda HR, Chen W, Adachi A, et al. A transcription factor response element for gene expression during circadian night. Nature 2002;418(6897):534-539.
-
(2002)
Nature
, vol.418
, Issue.6897
, pp. 534-539
-
-
Ueda, H.R.1
Chen, W.2
Adachi, A.3
-
26
-
-
1242274627
-
Genome annotation by highthroughput 5? RNA end determination
-
Hwang BJ, Muller HM, Sternberg PW. Genome annotation by highthroughput 5? RNA end determination. Proc Natl Acad Sci USA 2004;101(6): 1650-1655.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.6
, pp. 1650-1655
-
-
Hwang, B.J.1
Muller, H.M.2
Sternberg, P.W.3
-
27
-
-
0034352940
-
POWER-SAGE: Comparing statistical tests for SAGE experiments
-
Man MZ, Wang X, Wang Y. POWER-SAGE: comparing statistical tests for SAGE experiments. Bioinformatics 2000;16(11):953-959.
-
(2000)
Bioinformatics
, vol.16
, Issue.11
, pp. 953-959
-
-
Man, M.Z.1
Wang, X.2
Wang, Y.3
-
29
-
-
0028789793
-
Serial analysis of gene expression
-
Velculescu VE, Zhang L, Vogelstein B, Kinzler KW. Serial analysis of gene expression. Science 1995;270(5235):484-487.
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 484-487
-
-
Velculescu, V.E.1
Zhang, L.2
Vogelstein, B.3
Kinzler, K.W.4
-
30
-
-
7944237950
-
Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis
-
Kasukawa T, Katayama S, Kawaji H, Suzuki H, Hume DA, Hayashizaki Y. Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis. Genomics 2004;84(6):913-921.
-
(2004)
Genomics
, vol.84
, Issue.6
, pp. 913-921
-
-
Kasukawa, T.1
Katayama, S.2
Kawaji, H.3
Suzuki, H.4
Hume, D.A.5
Hayashizaki, Y.6
-
31
-
-
0038349286
-
Development and evaluation of an automated annotation pipeline and cDNA annotation system
-
Kasukawa T, Furuno M, Nikaido I, et al. Development and evaluation of an automated annotation pipeline and cDNA annotation system. Genome Res 2003;13(6B):1542-1551.
-
(2003)
Genome Res
, vol.13
, Issue.6 B
, pp. 1542-1551
-
-
Kasukawa, T.1
Furuno, M.2
Nikaido, I.3
-
32
-
-
20444467290
-
A microRNA polycistron as a potential human oncogene
-
He L, Thomson JM, Hemann MT, et al. A microRNA polycistron as a potential human oncogene. Nature 2005;435(7043):828-833.
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 828-833
-
-
He, L.1
Thomson, J.M.2
Hemann, M.T.3
-
33
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu J, Getz G, Miska EA, et al. MicroRNA expression profiles classify human cancers. Nature 2005;435(7043):834-838.
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
-
34
-
-
20444479428
-
Mendell JT. c-Mycregulated microRNAs modulate E2F1 expression
-
O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT. c-Mycregulated microRNAs modulate E2F1 expression. Nature 2005;435(7043): 839-843.
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 839-843
-
-
O'Donnell, K.A.1
Wentzel, E.A.2
Zeller, K.I.3
Dang, C.V.4
-
35
-
-
24644480213
-
Inhibition of translational initiation by Let-7 MicroRNA in human cells
-
Pillai RS, Bhattacharyya SN, Artus CG, et al. Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science 2005;309(5740): 1573-1576.
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1573-1576
-
-
Pillai, R.S.1
Bhattacharyya, S.N.2
Artus, C.G.3
-
36
-
-
23044507007
-
Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
-
Ting AH, Schuebel KE, Herman JG, Baylin SB. Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation. Nat Genet 2005;37(8):906-910.
-
(2005)
Nat Genet
, vol.37
, Issue.8
, pp. 906-910
-
-
Ting, A.H.1
Schuebel, K.E.2
Herman, J.G.3
Baylin, S.B.4
-
37
-
-
0037673656
-
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
-
Kiyosawa H, Yamanaka I, Osato N, Kondo S, Hayashizaki Y. Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res 2003;13(6B):1324-1334.
-
(2003)
Genome Res
, vol.13
, Issue.6 B
, pp. 1324-1334
-
-
Kiyosawa, H.1
Yamanaka, I.2
Osato, N.3
Kondo, S.4
Hayashizaki, Y.5
-
38
-
-
12244275645
-
Widespread occurrence of antisense transcription in the human genome
-
Yelin R, Dahary D, Sorek R, et al. Widespread occurrence of antisense transcription in the human genome. Nat Biotechnol 2003;21(4):379-386.
-
(2003)
Nat Biotechnol
, vol.21
, Issue.4
, pp. 379-386
-
-
Yelin, R.1
Dahary, D.2
Sorek, R.3
-
39
-
-
0038011488
-
A comprehensive transcript map of the mouse Gnas imprinted complex
-
Holmes R, Williamson C, Peters J, Denny P, Wells C. A comprehensive transcript map of the mouse Gnas imprinted complex. Genome Res 2003; 13(6B):1410-1415.
-
(2003)
Genome Res
, vol.13
, Issue.6 B
, pp. 1410-1415
-
-
Holmes, R.1
Williamson, C.2
Peters, J.3
Denny, P.4
Wells, C.5
-
40
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
Bertone P, Stolc V, Royce TE, et al. Global identification of human transcribed sequences with genome tiling arrays. Science 2004;306(5705):2242- 2246.
-
(2004)
Science
, vol.306
, Issue.5705
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
-
41
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley S, Bekiranov S, Ng HH, et al. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 2004;116(4):499-509.
-
(2004)
Cell
, vol.116
, Issue.4
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
-
42
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng J, Kapranov P, Drenkow J, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 2005;308(5725):1149-1154.
-
(2005)
Science
, vol.308
, Issue.5725
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
-
43
-
-
12144287461
-
Novel RNAs identified from an indepth analysis of the transcriptome of human chromosomes 21 and 22
-
Kampa D, Cheng J, Kapranov P, et al. Novel RNAs identified from an indepth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res 2004;14(3):331-342.
-
(2004)
Genome Res
, vol.14
, Issue.3
, pp. 331-342
-
-
Kampa, D.1
Cheng, J.2
Kapranov, P.3
-
44
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005;437(7057):376-380.
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
|