The Bic-C family of developmental translational regulators

Comparative and Functional Genomics

Volumn 2012, Issue , 2012, Pages

  Gamberi, Chiara ^a   Lasko, Paul ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PROTEIN BICAUDAL C; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

BIC C GENE; DEVELOPMENTAL BIOLOGY; DROSOPHILA; GENE; GENETIC CONSERVATION; KIDNEY POLYCYSTIC DISEASE; NONHUMAN; ORTHOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; REVIEW; SEQUENCE ANALYSIS;

EID: 84862302009     PISSN: 15316912     EISSN: 15326268     Source Type: Journal    
DOI: 10.1155/2012/141386     Document Type: Review

References (63)

1. Larkin M. A., Blackshields G., Brown N. P., Chenna R., Mcgettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A., Lopez R., Thompson J. D., Gibson T. J., Higgins D. G., Clustal W and Clustal X version 2.0 Bioinformatics 2007 23 21 2947 2948 (Pubitemid 350162903)
2. Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J., Lopez R., A new bioinformatics analysis tools framework at EMBL-EBI Nucleic Acids Research 2010 38 W695 W699
3. Mahone M., Saffman E. E., Lasko P. F., Localized Bicaudal-C RNA encodes a protein containing a KH domain, the RNA binding motif of FMR1 The Embo Journal 1995 14 9 2043 2055
4. Finn R. D., Mistry J., Tate J., Coggill P., Heger A., Pollington J. E., Gavin O. L., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E. L. L., Eddy S. R., Bateman A., The Pfam protein families database Nucleic Acids Research 2010 38 supplement 1 D211 D222
5. Ashburner M., Thompson P., Roote J., Lasko P. F., Grau Y., El Messal M., Roth S., Simpson P., The genetics of a small autosomal region of Drosophila melanogaster containing the structural gene for alcohol dehydrogenaseVII. Characterization of the region around the snail and cactus loci Genetics 1990 126 3 679 694 (Pubitemid 20372386)
6. Lasko P., Posttranscriptional regulation in Drosophila oocytes and early embryos Wiley Interdisciplinary Reviews: RNA 2011 2 3 408 416
7. Altschul S. F., Madden T. L., Schffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Research 1997 25 17 3389 3402 (Pubitemid 27359211)
8. McQuilton P., St Pierre S. E., Thurmond J., FlyBase 101the basics of navigating flyBase Nucleic Acids Research 2012 40 1 D706 D714
9. Mohler J., Wieschaus E. F., Dominant maternal-effect mutations of Drosophila melanogaster causing the production of double-abdomen embryos Genetics 1986 112 4 803 822 (Pubitemid 16111279)
10. Schupbach T., Wieschaus E., Germline autonomy of maternal-effect mutations altering the embryonic body pattern of Drosophila Developmental Biology 1986 113 2 443 448 (Pubitemid 16074695)
11. Grishin N. V., KH domain: one motif, two folds Nucleic Acids Research 2001 29 3 638 643 (Pubitemid 32124373)
12. Nakel K., Hartung S. A., Bonneau F., Eckmann C. R., Conti E., Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform RNA 2010 16 11 2058 2067
13. Kim C. A., Bowie J. U., SAM domains: uniform structure, diversity of function Trends in Biochemical Sciences 2003 28 12 625 628 (Pubitemid 37500895)
14. Saffman E. E., Styhler S., Rother K., Li W., Richard S., Lasko P., Premature translation of oskar in oocytes lacking the RNA-binding protein Bicaudal-C Molecular and Cellular Biology 1998 18 8 4855 4862 (Pubitemid 28343069)
15. Chicoine J., Benoit P., Gamberi C., Paliouras M., Simonelig M., Lasko P., Bicaudal-C Recruits CCR4-NOT deadenylase to target mRNAs and regulates Oogenesis, Cytoskeletal organization, and its own expression Developmental Cell 2007 13 5 691 704 (Pubitemid 350011988)
16. Bouvrette D. J., Price S. J., Bryda E. C., K homology domains of the mouse polycystic kidney disease-related protein, Bicaudal-C (Bicc1), mediate RNA binding in vitro Nephron Experimental Nephrology 2008 108 1 e27 e34
17. Lunde B. M., Moore C., Varani G., RNA-binding proteins: modular design for efficient function Nature Reviews 2007 8 6 479 490 (Pubitemid 46809150)
18. Peterson A. J., Kyba M., Bornemann D., Morgan K., Brock H. W., Simon J., A domain shared by the Polycomb group proteins Scm and ph mediates heterotypic and homotypic interactions Molecular and Cellular Biology 1997 17 11 6683 6692 (Pubitemid 27451215)
19. Qiao F., Bowie J. U., The many faces of SAM Science's STKE 2005 2005 286, article re7
20. Knight M. J., Leettola C., Gingery M., Li H., Bowie J. U., A human sterile alpha motif domain polymerizome Protein Science 2011 20 10 1697 1706
21. Chen T., Damaj B. B., Herrera C., Lasko P., Richard S., Self-association of the single-KH-domain family members Sam68, GRP33, GLD-1, and Qk1: role of the KH domain Molecular and Cellular Biology 1997 17 10 5707 5718 (Pubitemid 27411078)
22. Di Fruscio M., Chen T., Bonyadi S., Lasko P., Richard S., The identification of two Drosophila K homology domain proteins: KEP1 and SAM are members of the Sam68 family of GSG domain proteins Journal of Biological Chemistry 1998 273 46 30122 30130 (Pubitemid 28545474)
23. Eckmann C. R., Crittenden S. L., Suh N., Kimble J., GLD-3 and control of the mitosis/meiosis decision in the germline of Caenorhabditis elegans Genetics 2004 168 1 147 160 (Pubitemid 39346586)
24. Aviv T., Lin Z., Lau S., Rendl L. M., Sicheri F., Smibert C. A., The RNA-binding SAM domain of Smaug defines a new family of post-transcriptional regulators Nature Structural Biology 2003 10 8 614 621 (Pubitemid 36944714)
25. Gamberi C., Johnstone O., Lasko P., Drosophila RNA binding proteins International Review of Cytology 2006 248 43 139 (Pubitemid 43238170)
26. Maisonneuve C., Guilleret I., Vick P., Weber T., Andre P., Beyer T., Blum M., Constam D. B., Bicaudal C, a novel regulator of Dvl signaling abutting RNA-processing bodies, controls cilia orientation and leftward flow Development 2009 136 17 3019 3030
27. Tran U., Zakin L., Schweickert A., Agrawal R., Dger R., Blum M., De Robertis E. M., Wessely O., The RNA-binding protein bicaudal C regulates polycystin 2 in the kidney by antagonizing miR-17 activity Development 2010 137 7 1107 1116
28. Schultz J., Ponting C. P., Hofmann K., Bork P., SAM as a protein interaction domain involved in developmental regulation Protein Science 1997 6 1 249 253 (Pubitemid 27045264)
29. Eckmann C. R., Kraemer B., Wickens M., Kimble J., GLD-3, a bicaudal-C homolog that inhibits FBF to control germline sex determination in C. elegans Developmental Cell 2002 3 5 697 710 (Pubitemid 35339487)
30. Wang L., Eckmann C. R., Kadyk L. C., Wickens M., Kimble J., A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans Nature 2002 419 6904 312 316
31. Kugler J. M., Chicoine J., Lasko P., Bicaudal-C associates with a trailer hitch/Me31B complex and is required for efficient gurken secretion Developmental Biology 2009 328 1 160 172
32. Snee M. J., Macdonald P. M., Bicaudal C and trailer hitch have similar roles in gurken mRNA localization and cytoskeletal organization Developmental Biology 2009 328 2 434 444
33. Jaglarz M. K., Kloc M., Jankowska W., Szymanska B., Bilinski S. M., Nuage morphogenesis becomes more complex: two translocation pathways and two forms of nuage coexist in Drosophila germline syncytia Cell and Tissue Research 2011 344 1 169 181
34. Snee M. J., Macdonald P. M., Dynamic organization and plasticity of sponge bodies Developmental Dynamics 2009 238 4 918 930
35. Wilsch-Bruninger M., Schwarz H., Nsslein-Volhard C., A sponge-like structure involved in the association and transport of maternal products during Drosophila oogenesis Journal of Cell Biology 1997 139 3 817 829 (Pubitemid 27485845)
36. Olszewska M., Bujarski J. J., Kurpisz M., P-bodies and their functions during mRNA cell cycle: mini-review Cell Biochemistry and Function 2012 30 3 177 182
37. Parker R., Sheth U., P bodies and the control of mRNA translation and degradation Molecular Cell 2007 25 5 635 646 (Pubitemid 46341926)
38. Chen C. Y., Shyu A. B., AU-rich elements: characterization and importance in mRNA degradation Trends in Biochemical Sciences 1995 20 11 465 470
39. Tucker M., Staples R. R., Valencia-Sanchez M. A., Muhlrad D., Parker R., Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae The Embo Journal 2002 21 6 1427 1436 (Pubitemid 34246521)
40. Tucker M., Valencia-Sanchez M. A., Staples R. R., Chen J., Denis C. L., Parker R., The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae Cell 2001 104 3 377 386 (Pubitemid 32206458)
41. Chen J., Chiang Y. C., Denis C. L., CCR4, a 3′-5′ poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase The Embo Journal 2002 21 6 1414 1426 (Pubitemid 34246520)
42. Thore S., Mauxion F., Séraphin B., Suck D., X-ray structure and activity of the yeast Pop2 protein: A nuclease subunit of the mRNA deadenylase complex EMBO Reports 2003 4 12 1150 1155 (Pubitemid 38088410)
43. Daugeron M. C., Mauxion F., Séraphin B., The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation Nucleic Acids Research 2001 29 12 2448 2455 (Pubitemid 32600298)
44. Chen J., Rappsilber J., Chiang Y. C., Russell P., Mann M., Denis C. L., Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex Journal of Molecular Biology 2001 314 4 683 694 (Pubitemid 34087839)
45. Oberholzer U., Collart M. A., Characterization of NOT5 that encodes a new component of the Not protein complex Gene 1998 207 1 61 69 (Pubitemid 28083175)
46. Sigrist C. J. A., Cerutti L., de Castro E., Langendijk-Genevaux P. S., Bulliard V., Bairoch A., Hulo N., PROSITE, a protein domain database for functional characterization and annotation Nucleic Acids Research 2010 38 D161 D166
47. Temme C., Zaessinger S., Meyer S., Simonelig M., Wahle E., A complex containing the CCR4 and CAF1 proteins is involved in mRNA deadenylation in Drosophila The Embo Journal 2004 23 14 2862 2871 (Pubitemid 39013558)
48. Kraus M. R., Clauin S., Pfister Y., Two mutations in human BICC1 resulting in Wnt pathway hyperactivity associated with cystic renal dysplasia Human Mutation 2012 33 1 86 90
49. Burn T. C., Connors T. D., Dackowski W. R., Petry L. R., Van Raay T. J., Millholland J. M., Venet M., Miller G., Hakim R. M., Landes G. M., Klinger K. W., Qian F., Onuchic L. F., Watnick T., Germino G. G., Doggett N. A., Analysis of the genomic sequence for the autosomal dominant polycystic kidney disease (PKD1) gene predicts the presence of a leucine-rich repeat: the American PKD1 consortium (APKD1 Consortium) Human Molecular Genetics 1995 4 4 575 582
50. Hughes J., Ward C. J., Peral B., Aspinwall R., Clark K., San Milln J. L., Gamble V., Harris P. C., The polycystic kidney disease 1 (PKD1) gene encodes a novel protein with multiple cell recognition domains Nature Genetics 1995 10 2 151 160
51. Mochizuki T., Wu G., Hayashi T., Xenophontos S. L., Veldhuisen B., Saris J. J., Reynolds D. M., Cai Y., Gabow P. A., Pierides A., Kimberling W. J., Breuning M. H., Deltas C. C., Peters D. J. M., Somlo S., PKD2, a gene for polycystic kidney disease that encodes an integral membrane protein Science 1996 272 5266 1339 1342 (Pubitemid 26199975)
52. Hildebrandt F., Otto E., Rensing C., Nothwang H. G., Vollmer M., Adolphs J., Hanusch H., Brandis M., A novel gene encoding an SH3 domain protein is mutated in nephronophthisis type 1 Nature Genetics 1997 17 2 149 153 (Pubitemid 27425946)
53. Onuchic L. F., Furu L., Nagasawa Y., Hou X., Eggermann T., Ren Z., Bergmann C., Senderek J., Esquivel E., Zeltner R., Rudnik-Schneborn S., Mrug M., Sweeney W., Avner E. D., Zerres K., Guay-Woodford L. M., Somlo S., Germino G. G., PKHD1, the polycystic kidney and hepatic disease 1 gene, encodes a novel large protein containing multiple immunoglobulin-like plexin-transcription- factor domains and parallel beta-helix 1 repeats American Journal of Human Genetics 2002 70 5 1305 1317 (Pubitemid 34450580)
54. Ward C. J., Hogan M. C., Rossetti S., Walker D., Sneddon T., Wang X., Kubly V., Cunningham J. M., Bacallao R., Ishibashi M., Milliner D. S., Torres V. E., Harris P. C., The gene mutated in autosomal recessive polycystic kidney disease encodes a large, receptor-like protein Nature Genetics 2002 30 3 259 269
55. Xiong H., Chen Y., Yi Y., Tsuchiya K., Moeckel G., Cheung J., Liang D., Tham K., Xu X., Chen X. Z., Pei Y., Zhao Z. J., Wu G., A novel gene encoding a TIG multiple domain protein is a positional candidate for autosomal recessive polycystic kidney disease Genomics 2002 80 1 96 104 (Pubitemid 34701411)
56. Cogswell C., Price S. J., Hou X., Guay-Woodford L. M., Flaherty L., Bryda E. C., Positional cloning of jcpk/bpk locus of the mouse Mammalian Genome 2003 14 4 242 249 (Pubitemid 36408151)
57. Tran U., Pickney L. M., zpolat B. D., Wessely O., Xenopus bicaudal-C is required for the differentiation of the amphibian pronephros Developmental Biology 2007 307 1 152 164 (Pubitemid 46900819)
58. Bouvrette D. J., Sittaramane V., Heidel J. R., Chandrasekhar A., Bryda E. C., Knockdown of bicaudal C in zebrafish (Danio rerio) causes cystic kidneys: a nonmammalian model of polycystic kidney disease Comparative Medicine 2010 60 2 96 106
59. Fu Y., Kim I., Lian P., Li A., Zhou L., Li C., Liang D., Coffey R. J., Ma J., Zhao P., Zhan Q., Wu G., Loss of Bicc1 impairs tubulomorphogenesis of cultured IMCD cells by disrupting E-cadherin-based cell-cell adhesion European Journal of Cell Biology 2010 89 6 428 436
60. Jovanovic M., Hengartner M. O., miRNAs and apoptosis: RNAs to die for Oncogene 2006 25 46 6176 6187 (Pubitemid 44527848)
61. Neuman-Silberberg F. S., Schupbach T., The Drosophila dorsoventral patterning gene gurken produces a dorsally localized RNA and encodes a TGF -like protein Cell 1993 75 1 165 174 (Pubitemid 23306030)
62. Ray R. P., Schpbach T., Intercellular signaling and the polarization of body axes during Drosophila oogenesis Genes Development 1996 10 14 1711 1723 (Pubitemid 26272378)
63. Wilhelm J. E., Buszczak M., Sayles S., Efficient protein trafficking requires trailer hitch, a component of a ribonucleoprotein complex localized to the ER in Drosophila Developmental Cell 2005 9 5 675 685 (Pubitemid 41555149)