메뉴 건너뛰기




Volumn 16, Issue 11, 2010, Pages 2058-2067

Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform

Author keywords

Germline development; Post translational control; Protein protein interaction; RNA binding protein; SAXS

Indexed keywords

CYTOPLASM PROTEIN; DIMER; GLOBULAR PROTEIN; MESSENGER RNA; POLYNUCLEOTIDE ADENYLYLTRANSFERASE; PROTEIN GLD 2; PROTEIN GLD 3; UNCLASSIFIED DRUG;

EID: 78149325316     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2315010     Document Type: Article
Times cited : (26)

References (34)
  • 1
    • 0020790688 scopus 로고
    • The genetics of a small autosomal region of Drosophila melanogaster containing the structural gene for alcohol dehydrogenase. VI. Induced revertants of scutoid
    • Ashburner M, Detwiler C, Tsubota S, Woodruff RC. 1983. The genetics of a small autosomal region of Drosophila melanogaster containing the structural gene for alcohol dehydrogenase. VI. Induced revertants of scutoid. Genetics 104: 405-431.
    • (1983) Genetics , vol.104 , pp. 405-431
    • Ashburner, M.1    Detwiler, C.2    Tsubota, S.3    Woodruff, R.C.4
  • 2
    • 39149087365 scopus 로고    scopus 로고
    • K homology domains of the mouse polycystic kidney disease-related protein, Bicaudal-C (Bicc1), mediate RNA binding in vitro
    • Bouvrette DJ, Price SJ, Bryda EC. 2008. K homology domains of the mouse polycystic kidney disease-related protein, Bicaudal-C (Bicc1), mediate RNA binding in vitro. Nephron Exp Nephrol 108: e27-e34.
    • (2008) Nephron Exp Nephrol , vol.108
    • Bouvrette, D.J.1    Price, S.J.2    Bryda, E.C.3
  • 3
    • 0037186549 scopus 로고    scopus 로고
    • Structure and dynamics of KH domains from FBP bound to single-stranded DNA
    • DOI 10.1038/4151051a
    • Braddock DT, Louis JM, Baber JL, Levens D, Clore GM. 2002. Structure and dynamics of KH domains from FBP bound to single-stranded DNA. Nature 415: 1051-1056. (Pubitemid 34193456)
    • (2002) Nature , vol.415 , Issue.6875 , pp. 1051-1056
    • Braddock, D.T.1    Louis, J.M.2    Baber, J.L.3    Levens, D.4    Clore, G.M.5
  • 5
    • 27644435644 scopus 로고    scopus 로고
    • Structural framework for the mechanism of archaeal exosomes in RNA processing
    • Buttner K, Wenig K, Hopfner KP. 2005. Structural framework for the mechanism of archaeal exosomes in RNA processing. Mol Cell 20: 461-471.
    • (2005) Mol Cell , vol.20 , pp. 461-471
    • Buttner, K.1    Wenig, K.2    Hopfner, K.P.3
  • 7
    • 33644687877 scopus 로고    scopus 로고
    • Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 å
    • Du Z, Lee JK, Tjhen R, Li S, Pan H, Stroud RM, James TL. 2005. Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 Å. J Biol Chem 280: 38823-38830.
    • (2005) J Biol Chem , vol.280 , pp. 38823-38830
    • Du, Z.1    Lee, J.K.2    Tjhen, R.3    Li, S.4    Pan, H.5    Stroud, R.M.6    James, T.L.7
  • 8
    • 34250887075 scopus 로고    scopus 로고
    • X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2
    • Du Z, Lee JK, Fenn S, Tjhen R, Stroud RM, James TL. 2007. X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2. RNA 13: 1043-1051.
    • (2007) RNA , vol.13 , pp. 1043-1051
    • Du, Z.1    Lee, J.K.2    Fenn, S.3    Tjhen, R.4    Stroud, R.M.5    James, T.L.6
  • 9
    • 57649120777 scopus 로고    scopus 로고
    • Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms
    • Du Z, Fenn S, Tjhen R, James TL. 2008. Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms. J Biol Chem 283: 28757-28766.
    • (2008) J Biol Chem , vol.283 , pp. 28757-28766
    • Du, Z.1    Fenn, S.2    Tjhen, R.3    James, T.L.4
  • 10
    • 0036848046 scopus 로고    scopus 로고
    • GLD-3, a bicaudal-C homolog that inhibits FBF to control germline sex determination in C. elegans
    • Eckmann CR, Kraemer B, Wickens M, Kimble J. 2002. GLD-3, a bicaudal-C homolog that inhibits FBF to control germline sex determination in C. elegans. Dev Cell 3: 697-710.
    • (2002) Dev Cell , vol.3 , pp. 697-710
    • Eckmann, C.R.1    Kraemer, B.2    Wickens, M.3    Kimble, J.4
  • 11
    • 5144228745 scopus 로고    scopus 로고
    • GLD-3 and control of the mitosis/meiosis decision in the germline of Caenorhabditis elegans
    • DOI 10.1534/genetics.104.029264
    • Eckmann CR, Crittenden SL, Suh N, Kimble J. 2004. GLD-3 and control of the mitosis/meiosis decision in the germline of Caenorhabditis elegans. Genetics 168: 147-160. (Pubitemid 39346586)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 147-160
    • Eckmann, C.R.1    Crittenden, S.L.2    Suh, N.3    Kimble, J.4
  • 12
  • 16
    • 34249316905 scopus 로고    scopus 로고
    • RNA-binding proteins: Modular design for efficient function
    • Lunde BM, Moore C, Varani G. 2007. RNA-binding proteins: Modular design for efficient function. Nat Rev Mol Cell Biol 8: 479-490.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 479-490
    • Lunde, B.M.1    Moore, C.2    Varani, G.3
  • 17
    • 0029030017 scopus 로고
    • Localized Bicaudal-C RNA encodes a protein containing a KH domain, the RNA binding motif of FMR1
    • Mahone M, Saffman EE, Lasko PF. 1995. Localized Bicaudal-C RNA encodes a protein containing a KH domain, the RNA binding motif of FMR1. EMBO J 14: 2043-2055.
    • (1995) EMBO J , vol.14 , pp. 2043-2055
    • Mahone, M.1    Saffman, E.E.2    Lasko, P.F.3
  • 20
    • 0022589199 scopus 로고
    • Dominant maternal-effect mutations of Drosophila melanogaster causing the production of double-abdomen embryos
    • Mohler J, Wieschaus EF. 1986. Dominant maternal-effect mutations of Drosophila melanogaster causing the production of double-abdomen embryos. Genetics 112: 803-822.
    • (1986) Genetics , vol.112 , pp. 803-822
    • Mohler, J.1    Wieschaus, E.F.2
  • 21
    • 0029988528 scopus 로고    scopus 로고
    • Three-dimensional structure and stability of the KH domain: Molecular insights into the fragile X syndrome
    • Musco G, Stier G, Joseph C, Castiglione Morelli MA, Nilges M, Gibson TJ, Pastore A. 1996. Three-dimensional structure and stability of the KH domain: Molecular insights into the fragile X syndrome. Cell 85: 237-245.
    • (1996) Cell , vol.85 , pp. 237-245
    • Musco, G.1    Stier, G.2    Joseph, C.3    Castiglione Morelli, M.A.4    Nilges, M.5    Gibson, T.J.6    Pastore, A.7
  • 22
    • 43349102270 scopus 로고    scopus 로고
    • Computing multiple sequence/structure alignments with the T-coffee package
    • Notredame C, Suhre K. 2004. Computing multiple sequence/structure alignments with the T-coffee package. Curr Protoc Bioinformatics 3: 3.8.1-3.8.28.
    • (2004) Curr Protoc Bioinformatics , vol.3
    • Notredame, C.1    Suhre, K.2
  • 24
    • 37149049312 scopus 로고    scopus 로고
    • X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution
    • Putnam CD, Hammel M, Hura GL, Tainer JA. 2007. X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution. Q Rev Biophys 40: 191-285.
    • (2007) Q Rev Biophys , vol.40 , pp. 191-285
    • Putnam, C.D.1    Hammel, M.2    Hura, G.L.3    Tainer, J.A.4
  • 26
    • 67149128437 scopus 로고    scopus 로고
    • GLS-1, a novel P granule component, modulates a network of conserved RNA regulators to influence germ cell fate decisions
    • doi: 10.1371/journal.pgen.1000494
    • Rybarska A, Harterink M, Jedamzik B, Kupinski AP, Schmid M, Eckmann CR. 2009. GLS-1, a novel P granule component, modulates a network of conserved RNA regulators to influence germ cell fate decisions. PLoS Genet 5: e1000494. doi: 10.1371/journal.pgen.1000494.
    • (2009) PLoS Genet , vol.5
    • Rybarska, A.1    Harterink, M.2    Jedamzik, B.3    Kupinski, A.P.4    Schmid, M.5    Eckmann, C.R.6
  • 27
    • 0031877789 scopus 로고    scopus 로고
    • Premature translation of oskar in oocytes lacking the RNA-binding protein bicaudal-C
    • Saffman EE, Styhler S, Rother K, Li W, Richard S, Lasko P. 1998. Premature translation of oskar in oocytes lacking the RNA-binding protein bicaudal-C. Mol Cell Biol 18: 4855-4862.
    • (1998) Mol Cell Biol , vol.18 , pp. 4855-4862
    • Saffman, E.E.1    Styhler, S.2    Rother, K.3    Li, W.4    Richard, S.5    Lasko, P.6
  • 28
    • 0027273728 scopus 로고
    • The premRNA binding K protein contains a novel evolutionarily conserved motif
    • Siomi H, Matunis MJ, Michael WM, Dreyfuss G. 1993. The premRNA binding K protein contains a novel evolutionarily conserved motif. Nucleic Acids Res 21: 1193-1198.
    • (1993) Nucleic Acids Res , vol.21 , pp. 1193-1198
    • Siomi, H.1    Matunis, M.J.2    Michael, W.M.3    Dreyfuss, G.4
  • 29
    • 33750065697 scopus 로고    scopus 로고
    • The GLD-2 poly(A) polymerase activates gld-1 mRNA in the Caenorhabditis elegans germ line
    • Suh N, Jedamzik B, Eckmann CR, Wickens M, Kimble J. 2006. The GLD-2 poly(A) polymerase activates gld-1 mRNA in the Caenorhabditis elegans germ line. Proc Natl Acad Sci 103: 15108-15112.
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 15108-15112
    • Suh, N.1    Jedamzik, B.2    Eckmann, C.R.3    Wickens, M.4    Kimble, J.5
  • 30
    • 0035010533 scopus 로고    scopus 로고
    • Determination of domain structure of proteins from X-ray solution scattering
    • Svergun DI, Petoukhov MV, Koch MH. 2001. Determination of domain structure of proteins from X-ray solution scattering. Biophys J 80: 2946-2953.
    • (2001) Biophys J , vol.80 , pp. 2946-2953
    • Svergun, D.I.1    Petoukhov, M.V.2    Koch, M.H.3
  • 31
    • 43549124851 scopus 로고    scopus 로고
    • Structure and function of KH domains
    • Valverde R, Edwards L, Regan L. 2008. Structure and function of KH domains. FEBS J 275: 2712-2726.
    • (2008) FEBS J , vol.275 , pp. 2712-2726
    • Valverde, R.1    Edwards, L.2    Regan, L.3
  • 32
    • 0037701585 scopus 로고    scopus 로고
    • Uniqueness of ab initio shape determination in small-angle scattering
    • Volkov VV, Svergun DI. 2003. Uniqueness of ab initio shape determination in small-angle scattering. J Appl Crystallogr 36: 860-864.
    • (2003) J Appl Crystallogr , vol.36 , pp. 860-864
    • Volkov, V.V.1    Svergun, D.I.2
  • 34
    • 0037136552 scopus 로고    scopus 로고
    • A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans
    • Wang L, Eckmann CR, Kadyk LC, Wickens M, Kimble J. 2002. A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans. Nature 419: 312-316.
    • (2002) Nature , vol.419 , pp. 312-316
    • Wang, L.1    Eckmann, C.R.2    Kadyk, L.C.3    Wickens, M.4    Kimble, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.