메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Structural dynamics of HIV-1 envelope GP120 outer domain with V3 loop

Author keywords

[No Author keywords available]

Indexed keywords

CD4 ANTIBODY; GLYCOPROTEIN GP 120; MONOCLONAL ANTIBODY; RECOMBINANT PROTEIN; HIV ENVELOPE PROTEIN GP120 (305 321); HIV ENVELOPE PROTEIN GP120 (305-321); PEPTIDE FRAGMENT;

EID: 84862095730     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037530     Document Type: Article
Times cited : (43)

References (63)
  • 2
    • 34848868199 scopus 로고    scopus 로고
    • Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4
    • Huang CC, Lam SN, Acharya P, Tang M, Xiang SH, et al. (2007) Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4. Science 317: 1930-1934.
    • (2007) Science , vol.317 , pp. 1930-1934
    • Huang, C.C.1    Lam, S.N.2    Acharya, P.3    Tang, M.4    Xiang, S.H.5
  • 3
    • 0005014748 scopus 로고    scopus 로고
    • The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates
    • Choe H, Farzan M, Sun Y, Sullivan N, Rollins B, et al. (1996) The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates. Cell 85: 1135-1148.
    • (1996) Cell , vol.85 , pp. 1135-1148
    • Choe, H.1    Farzan, M.2    Sun, Y.3    Sullivan, N.4    Rollins, B.5
  • 4
    • 0030810706 scopus 로고    scopus 로고
    • Selective employment of chemokine receptors as human immunodeficiency virus type 1 coreceptors determined by individual amino acids within the envelope V3 loop
    • Speck RF, Wehrly K, Platt EJ, Atchison RE, Charo IF, et al. (1997) Selective employment of chemokine receptors as human immunodeficiency virus type 1 coreceptors determined by individual amino acids within the envelope V3 loop. J Virol 71: 7136-7139.
    • (1997) J Virol , vol.71 , pp. 7136-7139
    • Speck, R.F.1    Wehrly, K.2    Platt, E.J.3    Atchison, R.E.4    Charo, I.F.5
  • 5
    • 0032484486 scopus 로고    scopus 로고
    • CCR5 coreceptor usage of non-syncytium-inducing primary HIV-1 is independent of phylogenetically distinct global HIV-1 isolates: delineation of consensus motif in the V3 domain that predicts CCR-5 usage
    • Xiao L, Owen SM, Goldman I, Lal AA, deJong JJ, et al. (1998) CCR5 coreceptor usage of non-syncytium-inducing primary HIV-1 is independent of phylogenetically distinct global HIV-1 isolates: delineation of consensus motif in the V3 domain that predicts CCR-5 usage. Virology 240: 83-92.
    • (1998) Virology , vol.240 , pp. 83-92
    • Xiao, L.1    Owen, S.M.2    Goldman, I.3    Lal, A.A.4    deJong, J.J.5
  • 6
    • 0031935146 scopus 로고    scopus 로고
    • Identification of determinants on a dualtropic human immunodeficiency virus type 1 envelope glycoprotein that confer usage of CXCR4
    • Cho MW, Lee MK, Carney MC, Berson JF, Doms RW, et al. (1998) Identification of determinants on a dualtropic human immunodeficiency virus type 1 envelope glycoprotein that confer usage of CXCR4. J Virol 72: 2509-2515.
    • (1998) J Virol , vol.72 , pp. 2509-2515
    • Cho, M.W.1    Lee, M.K.2    Carney, M.C.3    Berson, J.F.4    Doms, R.W.5
  • 7
    • 0043080631 scopus 로고
    • Human immunodeficiency virus type 1 neutralization epitope with conserved architecture elicits early type-specific antibodies in experimentally infected chimpanzees
    • Goudsmit J, Debouck C, Meloen RH, Smit L, Bakker M, et al. (1988) Human immunodeficiency virus type 1 neutralization epitope with conserved architecture elicits early type-specific antibodies in experimentally infected chimpanzees. Proc Natl Acad Sci U S A 85: 4478-4482.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 4478-4482
    • Goudsmit, J.1    Debouck, C.2    Meloen, R.H.3    Smit, L.4    Bakker, M.5
  • 8
    • 0041914944 scopus 로고
    • Antibodies that inhibit fusion of human immunodeficiency virus-infected cells bind a 24-amino acid sequence of the viral envelope, gp120
    • Rusche JR, Javaherian K, McDanal C, Petro J, Lynn DL, et al. (1988) Antibodies that inhibit fusion of human immunodeficiency virus-infected cells bind a 24-amino acid sequence of the viral envelope, gp120. Proc Natl Acad Sci U S A 85: 3198-3202.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 3198-3202
    • Rusche, J.R.1    Javaherian, K.2    McDanal, C.3    Petro, J.4    Lynn, D.L.5
  • 9
  • 10
    • 0037032903 scopus 로고    scopus 로고
    • Interactions of human antibodies, epitope exposure, antibody binding and neutralization of primary isolate HIV-1 virions
    • Cavacini LA, Duval M, Robinson J, Posner MR, (2002) Interactions of human antibodies, epitope exposure, antibody binding and neutralization of primary isolate HIV-1 virions. Aids 16: 2409-2417.
    • (2002) Aids , vol.16 , pp. 2409-2417
    • Cavacini, L.A.1    Duval, M.2    Robinson, J.3    Posner, M.R.4
  • 11
    • 18744368767 scopus 로고    scopus 로고
    • Cryptic nature of a conserved, CD4-inducible V3 loop neutralization epitope in the native envelope glycoprotein oligomer of CCR5-restricted, but not CXCR4-using, primary human immunodeficiency virus type 1 strains
    • Lusso P, Earl PL, Sironi F, Santoro F, Ripamonti C, et al. (2005) Cryptic nature of a conserved, CD4-inducible V3 loop neutralization epitope in the native envelope glycoprotein oligomer of CCR5-restricted, but not CXCR4-using, primary human immunodeficiency virus type 1 strains. J Virol 79: 6957-6968.
    • (2005) J Virol , vol.79 , pp. 6957-6968
    • Lusso, P.1    Earl, P.L.2    Sironi, F.3    Santoro, F.4    Ripamonti, C.5
  • 12
    • 0028146788 scopus 로고
    • Cryptic nature of envelope V3 region epitopes protects primary monocytotropic human immunodeficiency virus type 1 from antibody neutralization
    • Bou-Habib DC, Roderiquez G, Oravecz T, Berman PW, Lusso P, et al. (1994) Cryptic nature of envelope V3 region epitopes protects primary monocytotropic human immunodeficiency virus type 1 from antibody neutralization. J Virol 68: 6006-6013.
    • (1994) J Virol , vol.68 , pp. 6006-6013
    • Bou-Habib, D.C.1    Roderiquez, G.2    Oravecz, T.3    Berman, P.W.4    Lusso, P.5
  • 13
    • 52449116186 scopus 로고    scopus 로고
    • Net positive charge of HIV-1 CRF01_AE V3 sequence regulates viral sensitivity to humoral immunity
    • Naganawa S, Yokoyama M, Shiino T, Suzuki T, Ishigatsubo Y, et al. (2008) Net positive charge of HIV-1 CRF01_AE V3 sequence regulates viral sensitivity to humoral immunity. PLoS One 3: e3206.
    • (2008) PLoS One , vol.3
    • Naganawa, S.1    Yokoyama, M.2    Shiino, T.3    Suzuki, T.4    Ishigatsubo, Y.5
  • 14
    • 0026760291 scopus 로고
    • Identification of envelope V3 loop as the major determinant of CD4 neutralization sensitivity of HIV-1
    • Hwang SS, Boyle TJ, Lyerly HK, Cullen BR, (1992) Identification of envelope V3 loop as the major determinant of CD4 neutralization sensitivity of HIV-1. Science 257: 535-537.
    • (1992) Science , vol.257 , pp. 535-537
    • Hwang, S.S.1    Boyle, T.J.2    Lyerly, H.K.3    Cullen, B.R.4
  • 15
    • 0028234850 scopus 로고
    • Amino acid substitutions in the human immunodeficiency virus type 1 gp120 V3 loop that change viral tropism also alter physical and functional properties of the virion envelope
    • Willey RL, Theodore TS, Martin MA, (1994) Amino acid substitutions in the human immunodeficiency virus type 1 gp120 V3 loop that change viral tropism also alter physical and functional properties of the virion envelope. J Virol 68: 4409-4419.
    • (1994) J Virol , vol.68 , pp. 4409-4419
    • Willey, R.L.1    Theodore, T.S.2    Martin, M.A.3
  • 16
    • 0028039851 scopus 로고
    • Increase in soluble CD4 binding to and CD4-induced dissociation of gp120 from virions correlates with infectivity of human immunodeficiency virus type 1
    • Willey RL, Martin MA, Peden KW, (1994) Increase in soluble CD4 binding to and CD4-induced dissociation of gp120 from virions correlates with infectivity of human immunodeficiency virus type 1. J Virol 68: 1029-1039.
    • (1994) J Virol , vol.68 , pp. 1029-1039
    • Willey, R.L.1    Martin, M.A.2    Peden, K.W.3
  • 17
    • 0032543307 scopus 로고    scopus 로고
    • Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
    • Kwong PD, Wyatt R, Robinson J, Sweet RW, Sodroski J, et al. (1998) Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature 393: 648-659.
    • (1998) Nature , vol.393 , pp. 648-659
    • Kwong, P.D.1    Wyatt, R.2    Robinson, J.3    Sweet, R.W.4    Sodroski, J.5
  • 18
    • 0026606727 scopus 로고
    • Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule
    • Fouchier RA, Groenink M, Kootstra NA, Tersmette M, Huisman HG, et al. (1992) Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J Virol 66: 3183-3187.
    • (1992) J Virol , vol.66 , pp. 3183-3187
    • Fouchier, R.A.1    Groenink, M.2    Kootstra, N.A.3    Tersmette, M.4    Huisman, H.G.5
  • 19
    • 0026672676 scopus 로고
    • Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: definition of critical amino acids involved in cell tropism
    • Chesebro B, Wehrly K, Nishio J, Perryman S, (1992) Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: definition of critical amino acids involved in cell tropism. J Virol 66: 6547-6554.
    • (1992) J Virol , vol.66 , pp. 6547-6554
    • Chesebro, B.1    Wehrly, K.2    Nishio, J.3    Perryman, S.4
  • 20
    • 0027221071 scopus 로고
    • V3 loop of the human immunodeficiency virus type 1 Env protein: interpreting sequence variability
    • Milich L, Margolin B, Swanstrom R, (1993) V3 loop of the human immunodeficiency virus type 1 Env protein: interpreting sequence variability. J Virol 67: 5623-5634.
    • (1993) J Virol , vol.67 , pp. 5623-5634
    • Milich, L.1    Margolin, B.2    Swanstrom, R.3
  • 21
    • 0031455910 scopus 로고    scopus 로고
    • Patterns of amino acid variability in NSI-like and SI-like V3 sequences and a linked change in the CD4-binding domain of the HIV-1 Env protein
    • Milich L, Margolin BH, Swanstrom R, (1997) Patterns of amino acid variability in NSI-like and SI-like V3 sequences and a linked change in the CD4-binding domain of the HIV-1 Env protein. Virology 239: 108-118.
    • (1997) Virology , vol.239 , pp. 108-118
    • Milich, L.1    Margolin, B.H.2    Swanstrom, R.3
  • 22
    • 0026702003 scopus 로고
    • Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution
    • de Jong J-J, de Ronde A, Keulen W, Tersmette M, Goudsmit J, (1992) Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution. J Virol 66: 6777-6780.
    • (1992) J Virol , vol.66 , pp. 6777-6780
    • de Jong, J.-J.1    de Ronde, A.2    Keulen, W.3    Tersmette, M.4    Goudsmit, J.5
  • 23
    • 0028148476 scopus 로고
    • A naturally occurring single basic amino acid substitution in the V3 region of the human immunodeficiency virus type 1 env protein alters the cellular host range and antigenic structure of the virus
    • Shioda T, Oka S, Ida S, Nokihara K, Toriyoshi H, et al. (1994) A naturally occurring single basic amino acid substitution in the V3 region of the human immunodeficiency virus type 1 env protein alters the cellular host range and antigenic structure of the virus. J Virol 68: 7689-7696.
    • (1994) J Virol , vol.68 , pp. 7689-7696
    • Shioda, T.1    Oka, S.2    Ida, S.3    Nokihara, K.4    Toriyoshi, H.5
  • 24
    • 0033027059 scopus 로고    scopus 로고
    • Role of naturally occurring basic amino acid substitutions in the human immunodeficiency virus type 1 subtype E envelope V3 loop on viral coreceptor usage and cell tropism
    • Kato K, Sato H, Takebe Y, (1999) Role of naturally occurring basic amino acid substitutions in the human immunodeficiency virus type 1 subtype E envelope V3 loop on viral coreceptor usage and cell tropism. J Virol 73: 5520-5526.
    • (1999) J Virol , vol.73 , pp. 5520-5526
    • Kato, K.1    Sato, H.2    Takebe, Y.3
  • 25
    • 34547460183 scopus 로고    scopus 로고
    • Molecular evolution of affinity and flexibility in the immune system
    • Thorpe IF, Brooks CL, 3rd, (2007) Molecular evolution of affinity and flexibility in the immune system. Proc Natl Acad Sci U S A 104: 8821-8826.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 8821-8826
    • Thorpe, I.F.1    Brooks 3rd, C.L.2
  • 26
    • 0032484096 scopus 로고    scopus 로고
    • Single-molecule enzymatic dynamics
    • Lu HP, Xun L, Xie XS, (1998) Single-molecule enzymatic dynamics. Science 282: 1877-1882.
    • (1998) Science , vol.282 , pp. 1877-1882
    • Lu, H.P.1    Xun, L.2    Xie, X.S.3
  • 27
    • 0031003997 scopus 로고    scopus 로고
    • Thermodynamics and kinetics of a Brownian motor
    • Astumian RD, (1997) Thermodynamics and kinetics of a Brownian motor. Science 276: 917-922.
    • (1997) Science , vol.276 , pp. 917-922
    • Astumian, R.D.1
  • 28
    • 0346726109 scopus 로고    scopus 로고
    • How enzymes work: analysis by modern rate theory and computer simulations
    • Garcia-Viloca M, Gao J, Karplus M, Truhlar DG, (2004) How enzymes work: analysis by modern rate theory and computer simulations. Science 303: 186-195.
    • (2004) Science , vol.303 , pp. 186-195
    • Garcia-Viloca, M.1    Gao, J.2    Karplus, M.3    Truhlar, D.G.4
  • 29
    • 18744371588 scopus 로고    scopus 로고
    • Molecular dynamics and protein function
    • Karplus M, Kuriyan J, (2005) Molecular dynamics and protein function. Proc Natl Acad Sci U S A 102: 6679-6685.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 6679-6685
    • Karplus, M.1    Kuriyan, J.2
  • 30
    • 38949151546 scopus 로고    scopus 로고
    • Molecular simulations of protein dynamics: new windows on mechanisms in biology
    • Dodson GG, Lane DP, Verma CS, (2008) Molecular simulations of protein dynamics: new windows on mechanisms in biology. EMBO Rep 9: 144-150.
    • (2008) EMBO Rep , vol.9 , pp. 144-150
    • Dodson, G.G.1    Lane, D.P.2    Verma, C.S.3
  • 31
    • 79960855403 scopus 로고    scopus 로고
    • A single amino acid of human immunodeficiency virus type 2 capsid protein affects conformation of two external loops and viral sensitivity to TRIM5alpha
    • Miyamoto T, Yokoyama M, Kono K, Shioda T, Sato H, et al. (2011) A single amino acid of human immunodeficiency virus type 2 capsid protein affects conformation of two external loops and viral sensitivity to TRIM5alpha. PLoS One 6: e22779.
    • (2011) PLoS One , vol.6
    • Miyamoto, T.1    Yokoyama, M.2    Kono, K.3    Shioda, T.4    Sato, H.5
  • 32
    • 79551603865 scopus 로고    scopus 로고
    • Identification of folding preferences of cleavage junctions of HIV-1 precursor proteins for regulation of cleavability
    • Ode H, Yokoyama M, Kanda T, Sato H, (2011) Identification of folding preferences of cleavage junctions of HIV-1 precursor proteins for regulation of cleavability. J Mol Model 17: 391-399.
    • (2011) J Mol Model , vol.17 , pp. 391-399
    • Ode, H.1    Yokoyama, M.2    Kanda, T.3    Sato, H.4
  • 33
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • Baker D, Sali A, (2001) Protein structure prediction and structural genomics. Science 294: 93-96.
    • (2001) Science , vol.294 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 35
    • 0033541972 scopus 로고    scopus 로고
    • Functional complementation of the envelope hypervariable V3 loop of human immunodeficiency virus type 1 subtype B by the subtype E V3 loop
    • Sato H, Kato K, Takebe Y, (1999) Functional complementation of the envelope hypervariable V3 loop of human immunodeficiency virus type 1 subtype B by the subtype E V3 loop. Virology 257: 491-501.
    • (1999) Virology , vol.257 , pp. 491-501
    • Sato, H.1    Kato, K.2    Takebe, Y.3
  • 36
    • 0035144979 scopus 로고    scopus 로고
    • Rapid and simple phenotypic assay for drug susceptibility of human immunodeficiency virus type 1 using CCR5-expressing HeLa/CD4(+) cell clone 1-10 (MAGIC-5)
    • Hachiya A, Aizawa-Matsuoka S, Tanaka M, Takahashi Y, Ida S, et al. (2001) Rapid and simple phenotypic assay for drug susceptibility of human immunodeficiency virus type 1 using CCR5-expressing HeLa/CD4(+) cell clone 1-10 (MAGIC-5). Antimicrob Agents Chemother 45: 495-501.
    • (2001) Antimicrob Agents Chemother , vol.45 , pp. 495-501
    • Hachiya, A.1    Aizawa-Matsuoka, S.2    Tanaka, M.3    Takahashi, Y.4    Ida, S.5
  • 37
    • 0026764516 scopus 로고
    • Delineation of immunoreactive, conserved regions in the external glycoprotein of the human immunodeficiency virus type 1
    • di Marzo Veronese F, Rahman R, Pal R, Boyer C, Romano J, et al. (1992) Delineation of immunoreactive, conserved regions in the external glycoprotein of the human immunodeficiency virus type 1. AIDS Res Hum Retroviruses 8: 1125-1132.
    • (1992) AIDS Res Hum Retroviruses , vol.8 , pp. 1125-1132
    • di Marzo Veronese, F.1    Rahman, R.2    Pal, R.3    Boyer, C.4    Romano, J.5
  • 38
    • 0025253821 scopus 로고
    • Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1
    • Simmonds P, Balfe P, Ludlam CA, Bishop JO, Brown AJ, (1990) Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1. J Virol 64: 5840-5850.
    • (1990) J Virol , vol.64 , pp. 5840-5850
    • Simmonds, P.1    Balfe, P.2    Ludlam, C.A.3    Bishop, J.O.4    Brown, A.J.5
  • 39
    • 0027978367 scopus 로고
    • Envelope sequence variation, neutralizing antibodies, and primate lentivirus persistence
    • Burns DP, Desrosiers RC, (1994) Envelope sequence variation, neutralizing antibodies, and primate lentivirus persistence. Curr Top Microbiol Immunol 188: 185-219.
    • (1994) Curr Top Microbiol Immunol , vol.188 , pp. 185-219
    • Burns, D.P.1    Desrosiers, R.C.2
  • 41
    • 0028826072 scopus 로고
    • Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period
    • Lukashov VV, Kuiken CL, Goudsmit J, (1995) Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. J Virol 69: 6911-6916.
    • (1995) J Virol , vol.69 , pp. 6911-6916
    • Lukashov, V.V.1    Kuiken, C.L.2    Goudsmit, J.3
  • 42
    • 34648824673 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 subtype distribution in the worldwide epidemic: pathogenetic and therapeutic implications
    • Buonaguro L, Tornesello ML, Buonaguro FM, (2007) Human immunodeficiency virus type 1 subtype distribution in the worldwide epidemic: pathogenetic and therapeutic implications. J Virol 81: 10209-10219.
    • (2007) J Virol , vol.81 , pp. 10209-10219
    • Buonaguro, L.1    Tornesello, M.L.2    Buonaguro, F.M.3
  • 43
    • 0030974121 scopus 로고    scopus 로고
    • A local electrostatic change is the cause of the large-scale protein conformation shift in bacteriorhodopsin
    • Brown LS, Kamikubo H, Zimanyi L, Kataoka M, Tokunaga F, et al. (1997) A local electrostatic change is the cause of the large-scale protein conformation shift in bacteriorhodopsin. Proc Natl Acad Sci U S A 94: 5040-5044.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 5040-5044
    • Brown, L.S.1    Kamikubo, H.2    Zimanyi, L.3    Kataoka, M.4    Tokunaga, F.5
  • 44
    • 78650426126 scopus 로고    scopus 로고
    • Single-particle cryoelectron microscopy analysis reveals the HIV-1 spike as a tripod structure
    • Wu SR, Loving R, Lindqvist B, Hebert H, Koeck PJ, et al. (2010) Single-particle cryoelectron microscopy analysis reveals the HIV-1 spike as a tripod structure. Proc Natl Acad Sci U S A 107: 18844-18849.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 18844-18849
    • Wu, S.R.1    Loving, R.2    Lindqvist, B.3    Hebert, H.4    Koeck, P.J.5
  • 45
    • 78651241895 scopus 로고    scopus 로고
    • Molecular architectures of trimeric SIV and HIV-1 envelope glycoproteins on intact viruses: strain-dependent variation in quaternary structure
    • White TA, Bartesaghi A, Borgnia MJ, Meyerson JR, de la Cruz MJ, et al. (2010) Molecular architectures of trimeric SIV and HIV-1 envelope glycoproteins on intact viruses: strain-dependent variation in quaternary structure. PLoS Pathog 6: e1001249.
    • (2010) PLoS Pathog , vol.6
    • White, T.A.1    Bartesaghi, A.2    Borgnia, M.J.3    Meyerson, J.R.4    de la Cruz, M.J.5
  • 46
    • 79952368717 scopus 로고    scopus 로고
    • Structural comparison of HIV-1 envelope spikes with and without the V1/V2 loop
    • Hu G, Liu J, Taylor KA, Roux KH, (2011) Structural comparison of HIV-1 envelope spikes with and without the V1/V2 loop. J Virol 85: 2741-2750.
    • (2011) J Virol , vol.85 , pp. 2741-2750
    • Hu, G.1    Liu, J.2    Taylor, K.A.3    Roux, K.H.4
  • 47
    • 83455254775 scopus 로고    scopus 로고
    • Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9
    • McLellan JS, Pancera M, Carrico C, Gorman J, Julien JP, et al. (2012) Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. Nature 480: 336-343.
    • (2012) Nature , vol.480 , pp. 336-343
    • McLellan, J.S.1    Pancera, M.2    Carrico, C.3    Gorman, J.4    Julien, J.P.5
  • 48
    • 34247156283 scopus 로고    scopus 로고
    • Impact of V2 mutations on escape from a potent neutralizing anti-V3 monoclonal antibody during in vitro selection of a primary human immunodeficiency virus type 1 isolate
    • Shibata J, Yoshimura K, Honda A, Koito A, Murakami T, et al. (2007) Impact of V2 mutations on escape from a potent neutralizing anti-V3 monoclonal antibody during in vitro selection of a primary human immunodeficiency virus type 1 isolate. J Virol 81: 3757-3768.
    • (2007) J Virol , vol.81 , pp. 3757-3768
    • Shibata, J.1    Yoshimura, K.2    Honda, A.3    Koito, A.4    Murakami, T.5
  • 49
    • 0034974149 scopus 로고    scopus 로고
    • N-linked glycosylation sites adjacent to and within the V1/V2 and the V3 loops of dualtropic human immunodeficiency virus type 1 isolate DH12 gp120 affect coreceptor usage and cellular tropism
    • Ogert RA, Lee MK, Ross W, Buckler-White A, Martin MA, et al. (2001) N-linked glycosylation sites adjacent to and within the V1/V2 and the V3 loops of dualtropic human immunodeficiency virus type 1 isolate DH12 gp120 affect coreceptor usage and cellular tropism. J Virol 75: 5998-6006.
    • (2001) J Virol , vol.75 , pp. 5998-6006
    • Ogert, R.A.1    Lee, M.K.2    Ross, W.3    Buckler-White, A.4    Martin, M.A.5
  • 50
    • 84859561617 scopus 로고    scopus 로고
    • Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops
    • Kwon YD, Finzi A, Wu X, Dogo-Isonagie C, Lee LK, et al. (2012) Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops. Proc Natl Acad Sci U S A 109: 5663-5668.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 5663-5668
    • Kwon, Y.D.1    Finzi, A.2    Wu, X.3    Dogo-Isonagie, C.4    Lee, L.K.5
  • 53
    • 0242443693 scopus 로고    scopus 로고
    • Force fields for protein simulations
    • Ponder JW, Case DA, (2003) Force fields for protein simulations. Adv Protein Chem 66: 27-85.
    • (2003) Adv Protein Chem , vol.66 , pp. 27-85
    • Ponder, J.W.1    Case, D.A.2
  • 55
    • 33748518255 scopus 로고    scopus 로고
    • Comparison of multiple Amber force fields and development of improved protein backbone parameters
    • Hornak V, Abel R, Okur A, Strockbine B, Roitberg A, et al. (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 65: 712-725.
    • (2006) Proteins , vol.65 , pp. 712-725
    • Hornak, V.1    Abel, R.2    Okur, A.3    Strockbine, B.4    Roitberg, A.5
  • 57
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC, (1977) Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes. J Comput Phys 23: 327-341.
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 58
    • 0023940408 scopus 로고
    • Characterization of a human immunodeficiency virus neutralizing monoclonal antibody and mapping of the neutralizing epitope
    • Matsushita S, Robert-Guroff M, Rusche J, Koito A, Hattori T, et al. (1988) Characterization of a human immunodeficiency virus neutralizing monoclonal antibody and mapping of the neutralizing epitope. J Virol 62: 2107-2114.
    • (1988) J Virol , vol.62 , pp. 2107-2114
    • Matsushita, S.1    Robert-Guroff, M.2    Rusche, J.3    Koito, A.4    Hattori, T.5
  • 59
    • 77954525340 scopus 로고    scopus 로고
    • Enhanced Exposure of Human Immunodeficiency Virus Type 1 Primary Isolate Neutralization Epitopes through Binding of CD4 Mimetic Compounds
    • Yoshimura K, Harada S, Shibata J, Hatada M, Yamada Y, et al. (2010) Enhanced Exposure of Human Immunodeficiency Virus Type 1 Primary Isolate Neutralization Epitopes through Binding of CD4 Mimetic Compounds. J Virol.
    • (2010) J Virol
    • Yoshimura, K.1    Harada, S.2    Shibata, J.3    Hatada, M.4    Yamada, Y.5
  • 60
    • 0033962921 scopus 로고    scopus 로고
    • A group of V3 sequences from human immunodeficiency virus type 1 subtype E non-syncytium-inducing, CCR5-using variants are resistant to positive selection pressure
    • Shiino T, Kato K, Kodaka N, Miyakuni T, Takebe Y, et al. (2000) A group of V3 sequences from human immunodeficiency virus type 1 subtype E non-syncytium-inducing, CCR5-using variants are resistant to positive selection pressure. J Virol 74: 1069-1078.
    • (2000) J Virol , vol.74 , pp. 1069-1078
    • Shiino, T.1    Kato, K.2    Kodaka, N.3    Miyakuni, T.4    Takebe, Y.5
  • 61
    • 55549147174 scopus 로고    scopus 로고
    • Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history
    • Motomura K, Oka T, Yokoyama M, Nakamura H, Mori H, et al. (2008) Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history. J Virol 82: 11247-11262.
    • (2008) J Virol , vol.82 , pp. 11247-11262
    • Motomura, K.1    Oka, T.2    Yokoyama, M.3    Nakamura, H.4    Mori, H.5
  • 62
    • 70350132019 scopus 로고    scopus 로고
    • Structural and biological constraints on diversity of regions immediately upstream of cleavage sites in calicivirus precursor proteins
    • Oka T, Yokoyama M, Katayama K, Tsunemitsu H, Yamamoto M, et al. (2009) Structural and biological constraints on diversity of regions immediately upstream of cleavage sites in calicivirus precursor proteins. Virology 394: 119-129.
    • (2009) Virology , vol.394 , pp. 119-129
    • Oka, T.1    Yokoyama, M.2    Katayama, K.3    Tsunemitsu, H.4    Yamamoto, M.5
  • 63
    • 0031178951 scopus 로고    scopus 로고
    • The mathematical theory of communication. 1963
    • Shannon CE, (1997) The mathematical theory of communication. 1963. MD Comput 14: 306-317.
    • (1997) MD Comput , vol.14 , pp. 306-317
    • Shannon, C.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.