-
1
-
-
0030986787
-
HIV-1-induced cell fusion is mediated by multiple regions within both the viral envelope and the CCR-5 co-receptor
-
Bieniasz, P. D., R. A. Fridell, I. Aramori, S. S. Ferguson, M. G. Caron, and B. R. Cullen. 1997. HIV-1-induced cell fusion is mediated by multiple regions within both the viral envelope and the CCR-5 co-receptor. EMBO J. 16:2599-2609.
-
(1997)
EMBO J.
, vol.16
, pp. 2599-2609
-
-
Bieniasz, P.D.1
Fridell, R.A.2
Aramori, I.3
Ferguson, S.S.4
Caron, M.G.5
Cullen, B.R.6
-
2
-
-
0028146788
-
Cryptic nature of envelope V3 region epitopes protects primary monocytotropic human immunodeficiency virus type 1 from antibody neutralization
-
Bou-Habib, D. C., G. Roderiquez, T. Oravecz, P. W. Berman, P. Lusso, and M. A. Norcross. 1994. Cryptic nature of envelope V3 region epitopes protects primary monocytotropic human immunodeficiency virus type 1 from antibody neutralization. J. Virol. 68:6006-6013.
-
(1994)
J. Virol.
, vol.68
, pp. 6006-6013
-
-
Bou-Habib, D.C.1
Roderiquez, G.2
Oravecz, T.3
Berman, P.W.4
Lusso, P.5
Norcross, M.A.6
-
3
-
-
0026672676
-
Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: Definition of critical amino acids involved in cell tropism
-
Chesebro, B., K. Wehrly, J. Nishio, and S. Perryman. 1992 Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: definition of critical amino acids involved in cell tropism. J. Virol. 66:6547-6554.
-
(1992)
J. Virol.
, vol.66
, pp. 6547-6554
-
-
Chesebro, B.1
Wehrly, K.2
Nishio, J.3
Perryman, S.4
-
4
-
-
0031935146
-
Identification of determinants on a dualtropic human immunodeficiency virus type 1 envelope glycoprotein that confer usage of CXCR4
-
Cho, M. W., M. K. Lee, M. C. Carney, J. F. Berson, R. W. Doms, and M. A. Martin. 1998. Identification of determinants on a dualtropic human immunodeficiency virus type 1 envelope glycoprotein that confer usage of CXCR4. J. Virol. 72:2509-2515.
-
(1998)
J. Virol.
, vol.72
, pp. 2509-2515
-
-
Cho, M.W.1
Lee, M.K.2
Carney, M.C.3
Berson, J.F.4
Doms, R.W.5
Martin, M.A.6
-
5
-
-
0005014748
-
The beta-chemokine receptors CCR3 and CCR5 facilitate infection hy primary HIV-1 isolates
-
Choe, H., M. Farzan, Y. Sun, N. Sullivan, B. Rollins, P. D. Ponath, L. Wu, C. R. Mackay, G. LaRosa, W. Newman, N. Gerard, C. Gerard, and J. Sodroski. 1996. The beta-chemokine receptors CCR3 and CCR5 facilitate infection hy primary HIV-1 isolates. Cell 85:1135-1148.
-
(1996)
Cell
, vol.85
, pp. 1135-1148
-
-
Choe, H.1
Farzan, M.2
Sun, Y.3
Sullivan, N.4
Rollins, B.5
Ponath, P.D.6
Wu, L.7
Mackay, C.R.8
LaRosa, G.9
Newman, W.10
Gerard, N.11
Gerard, C.12
Sodroski, J.13
-
6
-
-
0026702003
-
Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: Analysis by single amino acid substitution
-
De Jong, J. J., A. De Ronde, W. Keulen, M. Tersmette, and J. Goudsmit. 1992. Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution. J. Virol. 66:6777-6780.
-
(1992)
J. Virol.
, vol.66
, pp. 6777-6780
-
-
De Jong, J.J.1
De Ronde, A.2
Keulen, W.3
Tersmette, M.4
Goudsmit, J.5
-
7
-
-
15844419153
-
Identification of a major co-receptor for primary isolates of HIV-1
-
Deng, H., R. Liu, W. Ellmeier, S. Choe, D. Unutmaz, M. Burkhart, P. Di Marzio, S. Marmon, R. E. Sutton, C. M. Hill, C. B. Davis, S. C. Peiper, T. J. Schall, D. R. Littman, and N. R. Landau. 1996. Identification of a major co-receptor for primary isolates of HIV-1. Nature 381:661-666.
-
(1996)
Nature
, vol.381
, pp. 661-666
-
-
Deng, H.1
Liu, R.2
Ellmeier, W.3
Choe, S.4
Unutmaz, D.5
Burkhart, M.6
Marzio, P.D.7
Marmon, S.8
Sutton, R.E.9
Hill, C.M.10
Davis, C.B.11
Peiper, S.C.12
Schall, T.J.13
Littman, D.R.14
Landau, N.R.15
-
8
-
-
0027938980
-
Syncytium-inducing and non-syncytium-inducing capacity of human immunodeficiency virus type 1 subtypes other than B: Phenotypic and genotypic characteristics
-
De Wolf, F., E. Hogervorst, J. Goudsmit, E. M. Fenyo, H. Rubsamen-Waigmann, H. Holmes, B. Galvao-Castro, E. Karita, C. Wasi, S. D. Sempala, E. Baan, F. Zorgdrager, V. Lukashov, S. Osmanov, C. Kuiken, M. Cornelissen, and WHO Network for HIV Isolation and Characterization. 1994. Syncytium-inducing and non-syncytium-inducing capacity of human immunodeficiency virus type 1 subtypes other than B: phenotypic and genotypic characteristics. AIDS Res. Hum. Retroviruses 10:1387-1400.
-
(1994)
AIDS Res. Hum. Retroviruses
, vol.10
, pp. 1387-1400
-
-
De Wolf, F.1
Hogervorst, E.2
Goudsmit, J.3
Fenyo, E.M.4
Rubsamen-Waigmann, H.5
Holmes, H.6
Galvao-Castro, B.7
Karita, E.8
Wasi, C.9
Sempala, S.D.10
Baan, E.11
Zorgdrager, F.12
Lukashov, V.13
Osmanov, S.14
Kuiken, C.15
Cornelissen, M.16
-
9
-
-
3543113489
-
Global variation in the HIV-1 V3 region
-
B. Korber, B. Hahn, B. T. Foley, J. Mellors, T. Leitner, G. Myers, F. McCutchan, and C. Kuiken (ed.), Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, N. Mex.
-
Dighe, P. K., B. Korber, and B. T. Foley. 1997. Global variation in the HIV-1 V3 region, p. 74-206. In B. Korber, B. Hahn, B. T. Foley, J. Mellors, T. Leitner, G. Myers, F. McCutchan, and C. Kuiken (ed.), Human retrovirus and AIDS, vol. III. Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, N. Mex.
-
(1997)
Human Retrovirus and AIDS
, vol.3
, pp. 74-206
-
-
Dighe, P.K.1
Korber, B.2
Foley, B.T.3
-
10
-
-
0000461280
-
Confidence limits on phytogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
11
-
-
0000122573
-
PHYLIP - Phytogeny inference package (version 3.2)
-
Felsenstein, J. 1989. PHYLIP - phytogeny inference package (version 3.2). Cladistics 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
12
-
-
0028950499
-
Simple determination of human immunodeficiency virus type 1 syncytium-inducing V3 genotype by PCR
-
Fouchier, R. A., M. Brouwer, S. M. Broersen, and H. Schuitemaker. 1995. Simple determination of human immunodeficiency virus type 1 syncytium-inducing V3 genotype by PCR. J. Clin. Microbiol. 33:906-911.
-
(1995)
J. Clin. Microbiol.
, vol.33
, pp. 906-911
-
-
Fouchier, R.A.1
Brouwer, M.2
Broersen, S.M.3
Schuitemaker, H.4
-
13
-
-
0026606727
-
Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule
-
Fouchier, R. A., M. Groenink, N. A. Kootstra, M. Tersmette, H. G. Huisman, F. Miedema, and H. Schuitemaker. 1992. Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J. Virol. 66:3183-3187.
-
(1992)
J. Virol.
, vol.66
, pp. 3183-3187
-
-
Fouchier, R.A.1
Groenink, M.2
Kootstra, N.A.3
Tersmette, M.4
Huisman, H.G.5
Miedema, F.6
Schuitemaker, H.7
-
14
-
-
0031060165
-
Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease
-
Ganeshan, S., R. E. Dickover, B. T. Korber, Y. J. Bryson, and S. M. Wolinsky. 1997. Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease. J. Virol. 71:663-677.
-
(1997)
J. Virol.
, vol.71
, pp. 663-677
-
-
Ganeshan, S.1
Dickover, R.E.2
Korber, B.T.3
Bryson, Y.J.4
Wolinsky, S.M.5
-
15
-
-
1842331564
-
Envelope glycoproteins from human immunodeficiency virus types 1 and 2 and simian immunodeficiency virus can use human CCR5 as a coreceptor for viral entry and make direct CD4-dependent interactions with this chemokine receptor
-
Hill, C. M., H. Deng, D. Unutmaz, V. N. Kewalramani, L. Bastiani, M. K. Gorny, S. Zolla-Pazner, and D. R. Littman. 1997. Envelope glycoproteins from human immunodeficiency virus types 1 and 2 and simian immunodeficiency virus can use human CCR5 as a coreceptor for viral entry and make direct CD4-dependent interactions with this chemokine receptor. J. Virol. 71:6296-6304.
-
(1997)
J. Virol.
, vol.71
, pp. 6296-6304
-
-
Hill, C.M.1
Deng, H.2
Unutmaz, D.3
Kewalramani, V.N.4
Bastiani, L.5
Gorny, M.K.6
Zolla-Pazner, S.7
Littman, D.R.8
-
16
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis, D. M., and J. J. Bull. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
-
(1993)
Syst. Biol.
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
17
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho, S. N., H. D. Hunt, R. M. Horton, J. K. Pullen, and L. R. Pease. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
18
-
-
0026647419
-
Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient
-
Holmes. E. C., L. Q. Zhang, P. Simmonds, C. A. Ludlam, and A. J. Brown. 1992. Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient. Proc. Natl. Acad. Sci. USA 89:4835-4839.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 4835-4839
-
-
Holmes, E.C.1
Zhang, L.Q.2
Simmonds, P.3
Ludlam, C.A.4
Brown, A.J.5
-
19
-
-
0028353641
-
Biological, serological, and genetic characterization of HIV-1 subtype E isolates from northern Thailand
-
Ichimura, H., S. C. Kliks, S. Visrutaratna, C. Y. Ou, M. L. Kalish, and J. A. Levy. 1994. Biological, serological, and genetic characterization of HIV-1 subtype E isolates from northern Thailand. AIDS Res. Hum. Retroviruses 10:263-269.
-
(1994)
AIDS Res. Hum. Retroviruses
, vol.10
, pp. 263-269
-
-
Ichimura, H.1
Kliks, S.C.2
Visrutaratna, S.3
Ou, C.Y.4
Kalish, M.L.5
Levy, J.A.6
-
20
-
-
0033027059
-
Role of naturally occurring hasic amino acid substitutions on viral coreceptor usage and cellular tropism in human immunodeficiency virus type 1 subtype E envelope V3 loop
-
Kato, K., H. Sato, and Y. Takebe. 1999. Role of naturally occurring hasic amino acid substitutions on viral coreceptor usage and cellular tropism in human immunodeficiency virus type 1 subtype E envelope V3 loop. J. Virol. 73:5520-5526.
-
(1999)
J. Virol.
, vol.73
, pp. 5520-5526
-
-
Kato, K.1
Sato, H.2
Takebe, Y.3
-
21
-
-
0026915406
-
Evolution of the V3 envelope domain in proviral sequences and isolates of human immunodeficiency virus type 1 during transition of the viral biological phenotype
-
Kuiken, C. L., J. J. de Jong, E. Baan, W. Keulen, M. Tersmette, and J. Goudsmit. 1992. Evolution of the V3 envelope domain in proviral sequences and isolates of human immunodeficiency virus type 1 during transition of the viral biological phenotype. J. Virol. 66:4622-4627.
-
(1992)
J. Virol.
, vol.66
, pp. 4622-4627
-
-
Kuiken, C.L.1
De Jong, J.J.2
Baan, E.3
Keulen, W.4
Tersmette, M.5
Goudsmit, J.6
-
22
-
-
0003496662
-
-
The Pennsylvania State University, University Park, Pa.
-
Kumar, S., K. Tamura, and M. Nei. 1993. MEGA: molecular evolutionary genetics analysis, version 1.01. The Pennsylvania State University, University Park, Pa.
-
(1993)
MEGA: Molecular Evolutionary Genetics Analysis, Version 1.01
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
23
-
-
0028826072
-
Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period
-
Lukashov, V. V., C. L. Kuiken, and J. Goudsmit. 1995. Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. J Virol. 69:6911-6916.
-
(1995)
J Virol.
, vol.69
, pp. 6911-6916
-
-
Lukashov, V.V.1
Kuiken, C.L.2
Goudsmit, J.3
-
24
-
-
0026476474
-
Relationship of human immunodeficiency virus type 1 sequence heterogeneity to stage of disease
-
McNearney, T., Z. Hornickova, R. Markham, A. Birdwell, M. Arens, A. Saah, and L. Ratner. 1992. Relationship of human immunodeficiency virus type 1 sequence heterogeneity to stage of disease. Proc. Natl. Acad. Sci. USA 89:10247-10251.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10247-10251
-
-
McNearney, T.1
Hornickova, Z.2
Markham, R.3
Birdwell, A.4
Arens, M.5
Saah, A.6
Ratner, L.7
-
25
-
-
0027221071
-
V3 loop of the human immunodeficiency virus type 1 Env protein: Interpreting sequence variability
-
Milich, L., B. Margolin, and R. Swanstrom. 1993. V3 loop of the human immunodeficiency virus type 1 Env protein: interpreting sequence variability. J. Virol. 67:5623-5634.
-
(1993)
J. Virol.
, vol.67
, pp. 5623-5634
-
-
Milich, L.1
Margolin, B.2
Swanstrom, R.3
-
26
-
-
0003518435
-
-
Group T-10. Los Alamos National Laboratory, Los Alamos, N.Mex.
-
Myers, G., B. Korber, B. Hahn, K.-T. Jeang, J. Mellors, F. McCutchan, L. Henderson, and G. Pavlakis. 1995. Human retroviruses and AIDS 1995: a compilation and analysis of nucleic acid and amino acid sequences. Group T-10. Los Alamos National Laboratory, Los Alamos, N.Mex.
-
(1995)
Human Retroviruses and AIDS 1995: a Compilation and Analysis of Nucleic Acid and Amino Acid Sequences
-
-
Myers, G.1
Korber, B.2
Hahn, B.3
Jeang, K.-T.4
Mellors, J.5
McCutchan, F.6
Henderson, L.7
Pavlakis, G.8
-
27
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
28
-
-
0026318224
-
Changes in growth properties on passage in tissue culture of viruses derived from infectious molecular clones of HIV-1LAI, HIV-1MAL, and HIV-1ELI
-
Peden, K., M. Emerman, and L. Montagnier. 1991. Changes in growth properties on passage in tissue culture of viruses derived from infectious molecular clones of HIV-1LAI, HIV-1MAL, and HIV-1ELI. Virology 185: 661-672.
-
(1991)
Virology
, vol.185
, pp. 661-672
-
-
Peden, K.1
Emerman, M.2
Montagnier, L.3
-
29
-
-
0033081870
-
Evidence for differences in MT2 cell tropism according to genetic subtypes of HIV-1: Syncytium-inducing variants seem rare among subtype C HIV-1 viruses
-
Peeters, M., R. Vincent, J. L. Perret, M. Lasky, D. Patrel, F. Liegeois, V. Courgnaud, R. Seng, T. Matton, S. Molinier, and E. Delaporte. 1999. Evidence for differences in MT2 cell tropism according to genetic subtypes of HIV-1: syncytium-inducing variants seem rare among subtype C HIV-1 viruses. J. Acquired Immune Defic. Syndr. Hum. Retrovirol. 20:115-121.
-
(1999)
J. Acquired Immune Defic. Syndr. Hum. Retrovirol.
, vol.20
, pp. 115-121
-
-
Peeters, M.1
Vincent, R.2
Perret, J.L.3
Lasky, M.4
Patrel, D.5
Liegeois, F.6
Courgnaud, V.7
Seng, R.8
Matton, T.9
Molinier, S.10
Delaporte, E.11
-
30
-
-
0032789087
-
Characterization of V3 sequence heterogeneity in subtype C human immunodeficiency virus type 1 isolates from Malawi: Underrepresentation of X4 variants
-
Ping, L. H., J. A. Nelson, I. F. Hoffman, J. Schock, S. L. Lamers, M. Goodman, P. Vernazza, P. Kazembe, M. Maida, D. Zimba, M. M. Goodenow, J. J. Eron, Jr., S. A. Fiscus, M. S. Cohen, and R. Swanstrom. 1999. Characterization of V3 sequence heterogeneity in subtype C human immunodeficiency virus type 1 isolates from Malawi: underrepresentation of X4 variants. J. Virol. 73:6271-6281.
-
(1999)
J. Virol.
, vol.73
, pp. 6271-6281
-
-
Ping, L.H.1
Nelson, J.A.2
Hoffman, I.F.3
Schock, J.4
Lamers, S.L.5
Goodman, M.6
Vernazza, P.7
Kazembe, P.8
Maida, M.9
Zimba, D.10
Goodenow, M.M.11
Eron J.J., Jr.12
Fiscus, S.A.13
Cohen, M.S.14
Swanstrom, R.15
-
31
-
-
0025292473
-
Epitopes recognized by the neutralizing antibodies of an HIV-1-infected individual
-
Profy, A. T., P. A. Salinas, L. I. Eckler, N. M. Dunlop, P. L. Nara, and S. D. Putney. 1990. Epitopes recognized by the neutralizing antibodies of an HIV-1-infected individual. J. Immunol. 144:4641-4647.
-
(1990)
J. Immunol.
, vol.144
, pp. 4641-4647
-
-
Profy, A.T.1
Salinas, P.A.2
Eckler, L.I.3
Dunlop, N.M.4
Nara, P.L.5
Putney, S.D.6
-
32
-
-
0026599703
-
Viral phenotype and immune response in primary human immunodeficiency virus type 1 infection
-
Roos, M. T., J. M. Lange, R. E. de Goede, R. A. Coutinho, P. T. Schellekens, F. Miedema, and M. Tersmette. 1992. Viral phenotype and immune response in primary human immunodeficiency virus type 1 infection. J. Infect. Dis. 165:427-432.
-
(1992)
J. Infect. Dis.
, vol.165
, pp. 427-432
-
-
Roos, M.T.1
Lange, J.M.2
De Goede, R.E.3
Coutinho, R.A.4
Schellekens, P.T.5
Miedema, F.6
Tersmette, M.7
-
33
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
34
-
-
0033541972
-
Functional complementation of the envelope hypervariable V3 loop of human immunodeficiency virus type 1 subtype B by the subtype E V3 loop
-
Sato, H., K. Kato, and Y. Takebe. 1999. Functional complementation of the envelope hypervariable V3 loop of human immunodeficiency virus type 1 subtype B by the subtype E V3 loop. Virology 257:491-501.
-
(1999)
Virology
, vol.257
, pp. 491-501
-
-
Sato, H.1
Kato, K.2
Takebe, Y.3
-
35
-
-
0032899913
-
Evolution and biological characterization of human immunodeficiency virus type 1 subtype E gp120 V3 sequences following horizontal and vertical virus transmission in a single family
-
Sato, H., T. Shiino, N. Kodaka, K. Taniguchi, Y. Tomita, K. Kato, T. Miyakuni, and Y. Takebe. 1999. Evolution and biological characterization of human immunodeficiency virus type 1 subtype E gp120 V3 sequences following horizontal and vertical virus transmission in a single family. J. Virol. 73:3551-3559.
-
(1999)
J. Virol.
, vol.73
, pp. 3551-3559
-
-
Sato, H.1
Shiino, T.2
Kodaka, N.3
Taniguchi, K.4
Tomita, Y.5
Kato, K.6
Miyakuni, T.7
Takebe, Y.8
-
36
-
-
0031018017
-
Evidence for the selective pressure to reduce heterogeneity of HIV-1 subtype E envelope V3-loop sequences in an intrafamilial infection case
-
Sato, H., K. Taniguchi, Y. Tomita, T. Shiino, T. Miyakuni, and Y. Takebe. 1997. Evidence for the selective pressure to reduce heterogeneity of HIV-1 subtype E envelope V3-loop sequences in an intrafamilial infection case. AIDS 11:396-397.
-
(1997)
AIDS
, vol.11
, pp. 396-397
-
-
Sato, H.1
Taniguchi, K.2
Tomita, Y.3
Shiino, T.4
Miyakuni, T.5
Takebe, Y.6
-
37
-
-
0030670330
-
In vivo evolution of HIV-1 co-receptor usage and sensitivity to chemokine-mediated suppression
-
Scarlatti, G., E. Tresoldi, A. Bjorndal, R. Fredriksson, C. Colognesi, H. K. Deng, M. S. Malnati, A. Plebani, A. G. Siccardi, D. R. Littman, E. M. Fenyo, and P. Lusso. 1997. In vivo evolution of HIV-1 co-receptor usage and sensitivity to chemokine-mediated suppression. Nat. Med. 3:1259-1265.
-
(1997)
Nat. Med.
, vol.3
, pp. 1259-1265
-
-
Scarlatti, G.1
Tresoldi, E.2
Bjorndal, A.3
Fredriksson, R.4
Colognesi, C.5
Deng, H.K.6
Malnati, M.S.7
Plebani, A.8
Siccardi, A.G.9
Littman, D.R.10
Fenyo, E.M.11
Lusso, P.12
-
38
-
-
0018374028
-
The genes coding for the surface glycoproteins of influenza A viruses contain a small conserved and a large variable region
-
Scholtissek, C. 1979. The genes coding for the surface glycoproteins of influenza A viruses contain a small conserved and a large variable region. Virology 93:594-597.
-
(1979)
Virology
, vol.93
, pp. 594-597
-
-
Scholtissek, C.1
-
39
-
-
0023641120
-
Molecular aspects of the epidemiology of virus disease
-
Scholtissek, C. 1987. Molecular aspects of the epidemiology of virus disease. Experientia 43:1197-1201.
-
(1987)
Experientia
, vol.43
, pp. 1197-1201
-
-
Scholtissek, C.1
-
40
-
-
0029095624
-
Natural selection on the gag, pol, and env genes of human immunodeficiency virus 1 (HIV-1)
-
Seibert, S. A., C. Y. Howell, M. K. Hughes, and A. L. Hughes. 1995. Natural selection on the gag, pol, and env genes of human immunodeficiency virus 1 (HIV-1). Mol. Biol. Evol. 12:803-813.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 803-813
-
-
Seibert, S.A.1
Howell, C.Y.2
Hughes, M.K.3
Hughes, A.L.4
-
41
-
-
0026754683
-
Small amino acid changes in the V3 hypervariable region of gp120 can affect the T-cell-line and macrophage tropism of human immunodeficiency virus type 1
-
Shioda, T., J. A. Levy, and C. Cheng-Mayer. 1992. Small amino acid changes in the V3 hypervariable region of gp120 can affect the T-cell-line and macrophage tropism of human immunodeficiency virus type 1. Proc. Natl. Acad. Sci. USA 89:9434-9438.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 9434-9438
-
-
Shioda, T.1
Levy, J.A.2
Cheng-Mayer, C.3
-
42
-
-
0028559470
-
Conserved V3 loop sequences and transmission of human immunodeficiency virus type 1
-
Shpaer, E. G., E. L. Delwart, C. L. Kuiken, J. Goudsmit, M. H. Bachmann, and J. I. Mullins. 1994. Conserved V3 loop sequences and transmission of human immunodeficiency virus type 1. AIDS Res. Hum. Retroviruses 10: 1679-1684.
-
(1994)
AIDS Res. Hum. Retroviruses
, vol.10
, pp. 1679-1684
-
-
Shpaer, E.G.1
Delwart, E.L.2
Kuiken, C.L.3
Goudsmit, J.4
Bachmann, M.H.5
Mullins, J.I.6
-
43
-
-
0025253821
-
Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1
-
Simmonds, P., P. Balfe, C. A. Ludlam, J. O. Bishop, and A. J. Brown. 1990. Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1. J. Virol. 64:5840-5850.
-
(1990)
J. Virol.
, vol.64
, pp. 5840-5850
-
-
Simmonds, P.1
Balfe, P.2
Ludlam, C.A.3
Bishop, J.O.4
Brown, A.J.5
-
44
-
-
10344266976
-
Primary, syncytium-inducing human immunodeficiency virus type 1 isolates are dual-tropic and most can use either Lestr or CCR5 as coreceptors for virus entry
-
Simmons, G., D. Wilkinson, J. D. Reeves, M. T. Dittmar, S. Beddows, J. Weber, G. Carnegie, U. Desselberger, P. W. Gray, R. A. Weiss, and P. R. Clapham. 1996. Primary, syncytium-inducing human immunodeficiency virus type 1 isolates are dual-tropic and most can use either Lestr or CCR5 as coreceptors for virus entry. J. Virol. 70:8355-8360.
-
(1996)
J. Virol.
, vol.70
, pp. 8355-8360
-
-
Simmons, G.1
Wilkinson, D.2
Reeves, J.D.3
Dittmar, M.T.4
Beddows, S.5
Weber, J.6
Carnegie, G.7
Desselberger, U.8
Gray, P.W.9
Weiss, R.A.10
Clapham, P.R.11
-
45
-
-
0021716351
-
Estimation of evolutionary distance between nucleotide sequences
-
Tajima, F., and M. Nei. 1984. Estimation of evolutionary distance between nucleotide sequences. Mol. Biol. Evol. 1:269-285.
-
(1984)
Mol. Biol. Evol.
, vol.1
, pp. 269-285
-
-
Tajima, F.1
Nei, M.2
-
46
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
47
-
-
0027991518
-
The majority of neutralizing Abs in HIV-1-infected patients recognize linear V3 loop sequences. Studies using HIV-1MN multiple antigenic peptides
-
Vogel, T., R. Kurth, and S. Norley. 1994. The majority of neutralizing Abs in HIV-1-infected patients recognize linear V3 loop sequences. Studies using HIV-1MN multiple antigenic peptides. J. Immunol. 153:1895-1904.
-
(1994)
J. Immunol.
, vol.153
, pp. 1895-1904
-
-
Vogel, T.1
Kurth, R.2
Norley, S.3
-
48
-
-
0026591753
-
Macrophage tropism determinants of human immunodeficiency virus type 1 in vivo
-
Westervelt, P., D. B. Trowbridge, L. G. Epstein, B. M. Blumberg, Y. Li, B. H. Hahn, G. M. Shaw, R. W. Price, and L. Ratner. 1992. Macrophage tropism determinants of human immunodeficiency virus type 1 in vivo. J. Virol. 66:2577-2582.
-
(1992)
J. Virol.
, vol.66
, pp. 2577-2582
-
-
Westervelt, P.1
Trowbridge, D.B.2
Epstein, L.G.3
Blumberg, B.M.4
Li, Y.5
Hahn, B.H.6
Shaw, G.M.7
Price, R.W.8
Ratner, L.9
-
49
-
-
0023930757
-
In vitro mutagenesis identities a region within the envelope gene of the human immunodeficiency virus that is critical for infectivity
-
Willey, R. L., D. H. Smith, L. A. Lasky, T. S. Theodore, P. L. Earl, B. Moss, D. J. Capon, and M. A. Martin. 1988. In vitro mutagenesis identities a region within the envelope gene of the human immunodeficiency virus that is critical for infectivity. J. Virol. 62:139-147.
-
(1988)
J. Virol.
, vol.62
, pp. 139-147
-
-
Willey, R.L.1
Smith, D.H.2
Lasky, L.A.3
Theodore, T.S.4
Earl, P.L.5
Moss, B.6
Capon, D.J.7
Martin, M.A.8
-
50
-
-
0028234850
-
Amino acid substitutions in the human immunodeficiency virus type 1 gp120 V3 loop that change viral tropism also alter physical and functional properties of the virion envelope
-
Willey, R. L., T. S. Theodore, and M. A. Martin. 1994. Amino acid substitutions in the human immunodeficiency virus type 1 gp120 V3 loop that change viral tropism also alter physical and functional properties of the virion envelope. J. Virol. 68:4409-4419.
-
(1994)
J. Virol.
, vol.68
, pp. 4409-4419
-
-
Willey, R.L.1
Theodore, T.S.2
Martin, M.A.3
-
51
-
-
15844385082
-
Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection
-
Wolinski, S. M., B. T. Korber, A. U. Neumann, M. Daniels, K. J. Kunstman, A. J. Whetsell, M. R. Furtado, Y. Cao, D. D. Ho, and J. T. Safrit. 1996. Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection. Science 272:537-542.
-
(1996)
Science
, vol.272
, pp. 537-542
-
-
Wolinski, S.M.1
Korber, B.T.2
Neumann, A.U.3
Daniels, M.4
Kunstman, K.J.5
Whetsell, A.J.6
Furtado, M.R.7
Cao, Y.8
Ho, D.D.9
Safrit, J.T.10
-
52
-
-
16144365650
-
CD4-induced interaction of primary HIV-1 gp120 glycoproteins with the chemokine receptor CCR-5
-
Wu, L., N. P. Gerard, R. Wyatt, H. Choe, C. Parolin, N. Ruffing, A. Borsetti, A. A. Cardoso, E. Desjardin, W. Newman, C. Gerard, and J. Sodroski. 1996 CD4-induced interaction of primary HIV-1 gp120 glycoproteins with the chemokine receptor CCR-5. Nature 384:179-183.
-
(1996)
Nature
, vol.384
, pp. 179-183
-
-
Wu, L.1
Gerard, N.P.2
Wyatt, R.3
Choe, H.4
Parolin, C.5
Ruffing, N.6
Borsetti, A.7
Cardoso, A.A.8
Desjardin, E.9
Newman, W.10
Gerard, C.11
Sodroski, J.12
-
53
-
-
0027968280
-
Cell type-specific heterogeneity of the HIV-1 V3 loop in infected individuals: Selection of virus in macrophages and plasma
-
Yamashita, A., N. Yamamoto, J. Matsuda, and Y. Koyanagi. 1994. Cell type-specific heterogeneity of the HIV-1 V3 loop in infected individuals: selection of virus in macrophages and plasma. Virology 204:170-179.
-
(1994)
Virology
, vol.204
, pp. 170-179
-
-
Yamashita, A.1
Yamamoto, N.2
Matsuda, J.3
Koyanagi, Y.4
-
54
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS 13:555-556.
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
55
-
-
0028820333
-
A new method of inference of ancestral nucleotide and amino acid sequences
-
Yang, Z., S. Kumar, and M. Nei. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-1650.
-
(1995)
Genetics
, vol.141
, pp. 1641-1650
-
-
Yang, Z.1
Kumar, S.2
Nei, M.3
-
56
-
-
0029044807
-
Phenotypic and genotypic characteristics of human immunodeficiency virus type 1 from patients with AIDS in northern Thailand
-
Yu, X. F., Z. Wang, C. Beyrer, D. D. Celentano, C. Khamboonruang, E. Allen, and K. Nelson. 1995. Phenotypic and genotypic characteristics of human immunodeficiency virus type 1 from patients with AIDS in northern Thailand. J. Virol. 69:4649-4655.
-
(1995)
J. Virol.
, vol.69
, pp. 4649-4655
-
-
Yu, X.F.1
Wang, Z.2
Beyrer, C.3
Celentano, D.D.4
Khamboonruang, C.5
Allen, E.6
Nelson, K.7
-
57
-
-
0031306932
-
Small-sample tests of episodic adaptive evolution: A case study of primate lysozymes
-
Zhang. J., S. Kumar, and M. Nei. 1997. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Mol. Biol. Evol. 14:1335-1338.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1335-1338
-
-
Zhang, J.1
Kumar, S.2
Nei, M.3
-
58
-
-
0031041894
-
Host-specific driving force in human immunodeficiency virus type 1 evolution in vivo
-
Zhang, L., R. S. Diaz, D. D. Ho, J. W. Mosley, M. P. Busch, and A. Mayer. 1997. Host-specific driving force in human immunodeficiency virus type 1 evolution in vivo. J. Virol. 71:2555-2561.
-
(1997)
J. Virol.
, vol.71
, pp. 2555-2561
-
-
Zhang, L.1
Diaz, R.S.2
Ho, D.D.3
Mosley, J.W.4
Busch, M.P.5
Mayer, A.6
-
59
-
-
0027422278
-
Genotypic and phenotypic characterization of HIV-1 patients with primary infection
-
Zhu, T., H. Mo, N. Wang, D. S. Nam, Y. Cao, R. A. Koup, and D. D. Ho. 1993. Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 261:1179-1181.
-
(1993)
Science
, vol.261
, pp. 1179-1181
-
-
Zhu, T.1
Mo, H.2
Wang, N.3
Nam, D.S.4
Cao, Y.5
Koup, R.A.6
Ho, D.D.7
|