-
1
-
-
0037135669
-
Realities and enigmas of human viral influenza: pathogenesis, epidemiology and control
-
Hilleman MR, (2002) Realities and enigmas of human viral influenza: pathogenesis, epidemiology and control. Vaccine 20: 3068-3087.
-
(2002)
Vaccine
, vol.20
, pp. 3068-3087
-
-
Hilleman, M.R.1
-
2
-
-
0036514779
-
Updating the accounts: global mortality of the 1918-1920 "Spanish" influenza pandemic
-
Johnson NP, Mueller J, (2002) Updating the accounts: global mortality of the 1918-1920 "Spanish" influenza pandemic. Bull Hist Med 76: 105-115.
-
(2002)
Bull Hist Med
, vol.76
, pp. 105-115
-
-
Johnson, N.P.1
Mueller, J.2
-
3
-
-
77954162510
-
Influenza (Seasonal) Fact sheet N°
-
World Health Organization (WHO)
-
World Health Organization (WHO) (2009) Influenza (Seasonal) Fact sheet N° 211.
-
(2009)
, vol.211
-
-
-
4
-
-
30344476995
-
Mortality due to influenza in the United States-an annualized regression approach using multiple-cause mortality data
-
Dushoff J, Plotkin JB, Viboud C, Earn DJ, Simonsen L, (2006) Mortality due to influenza in the United States-an annualized regression approach using multiple-cause mortality data. Am J Epidemiol 163: 181-187.
-
(2006)
Am J Epidemiol
, vol.163
, pp. 181-187
-
-
Dushoff, J.1
Plotkin, J.B.2
Viboud, C.3
Earn, D.J.4
Simonsen, L.5
-
5
-
-
0037425564
-
Mortality associated with influenza and respiratory syncytial virus in the United States
-
Thompson WW, Shay DK, Weintraub E, Brammer L, Cox N, et al. (2003) Mortality associated with influenza and respiratory syncytial virus in the United States. JAMA 289: 179-186.
-
(2003)
JAMA
, vol.289
, pp. 179-186
-
-
Thompson, W.W.1
Shay, D.K.2
Weintraub, E.3
Brammer, L.4
Cox, N.5
-
6
-
-
4544332903
-
Influenza-associated hospitalizations in the United States
-
Thompson WW, Shay DK, Weintraub E, Brammer L, Bridges CB, et al. (2004) Influenza-associated hospitalizations in the United States. JAMA 292: 1333-1340.
-
(2004)
JAMA
, vol.292
, pp. 1333-1340
-
-
Thompson, W.W.1
Shay, D.K.2
Weintraub, E.3
Brammer, L.4
Bridges, C.B.5
-
7
-
-
77949597169
-
Designing inhibitors of M2 proton channel against H1N1 swine influenza virus
-
Du QS, Huang RB, Wang SQ, Chou KC, (2010) Designing inhibitors of M2 proton channel against H1N1 swine influenza virus. PLoS One 5: e9388.
-
(2010)
PLoS One
, vol.5
-
-
Du, Q.S.1
Huang, R.B.2
Wang, S.Q.3
Chou, K.C.4
-
8
-
-
2942530436
-
Inhibition of influenza virus production in virus-infected mice by RNA interference
-
Ge Q, Filip L, Bai A, Nguyen T, Eisen HN, et al. (2004) Inhibition of influenza virus production in virus-infected mice by RNA interference. Proc Natl Acad Sci U S A 101: 8676-8681.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 8676-8681
-
-
Ge, Q.1
Filip, L.2
Bai, A.3
Nguyen, T.4
Eisen, H.N.5
-
9
-
-
2942620143
-
Protection against lethal influenza virus challenge by RNA interference in vivo
-
Tompkins SM, Lo CY, Tumpey TM, Epstein SL, (2004) Protection against lethal influenza virus challenge by RNA interference in vivo. Proc Natl Acad Sci U S A 101: 8682-8686.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 8682-8686
-
-
Tompkins, S.M.1
Lo, C.Y.2
Tumpey, T.M.3
Epstein, S.L.4
-
10
-
-
79956225207
-
Identification of potential conserved RNA secondary structure throughout influenza A coding regions
-
Moss WN, Priore SF, Turner DH, (2011) Identification of potential conserved RNA secondary structure throughout influenza A coding regions. RNA 17: 991-1011.
-
(2011)
RNA
, vol.17
, pp. 991-1011
-
-
Moss, W.N.1
Priore, S.F.2
Turner, D.H.3
-
11
-
-
0029815612
-
Novel exploitation of a nuclear function by influenza virus: the cellular SF2/ASF splicing factor controls the amount of the essential viral M2 ion channel protein in infected cells
-
Shih SR, Krug RM, (1996) Novel exploitation of a nuclear function by influenza virus: the cellular SF2/ASF splicing factor controls the amount of the essential viral M2 ion channel protein in infected cells. EMBO J 15: 5415-5427.
-
(1996)
EMBO J
, vol.15
, pp. 5415-5427
-
-
Shih, S.R.1
Krug, R.M.2
-
12
-
-
0019859896
-
Sequences of mRNAs derived from genome RNA segment 7 of influenza virus: colinear and interrupted mRNAs code for overlapping proteins
-
Lamb RA, Lai CJ, Choppin PW, (1981) Sequences of mRNAs derived from genome RNA segment 7 of influenza virus: colinear and interrupted mRNAs code for overlapping proteins. Proc Natl Acad Sci U S A 78: 4170-4174.
-
(1981)
Proc Natl Acad Sci U S A
, vol.78
, pp. 4170-4174
-
-
Lamb, R.A.1
Lai, C.J.2
Choppin, P.W.3
-
13
-
-
57749085665
-
Solution conformation and thermodynamic characteristics of RNA binding by the splicing factor U2AF65
-
Jenkins JL, Shen H, Green MR, Kielkopf CL, (2008) Solution conformation and thermodynamic characteristics of RNA binding by the splicing factor U2AF65. J Biol Chem 283: 33641-33649.
-
(2008)
J Biol Chem
, vol.283
, pp. 33641-33649
-
-
Jenkins, J.L.1
Shen, H.2
Green, M.R.3
Kielkopf, C.L.4
-
14
-
-
83755178484
-
The accumulation of influenza A virus segment 7 spliced mRNAs is regulated by the NS1 protein
-
Robb NC, Fodor E, (2011) The accumulation of influenza A virus segment 7 spliced mRNAs is regulated by the NS1 protein. J Gen Virol 93: 113-118.
-
(2011)
J Gen Virol
, vol.93
, pp. 113-118
-
-
Robb, N.C.1
Fodor, E.2
-
15
-
-
0029022820
-
The choice of alternative 5′ splice sites in influenza virus M1 mRNA is regulated by the viral polymerase complex
-
Shih SR, Nemeroff ME, Krug RM, (1995) The choice of alternative 5′ splice sites in influenza virus M1 mRNA is regulated by the viral polymerase complex. Proc Natl Acad Sci U S A 92: 6324-6328.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 6324-6328
-
-
Shih, S.R.1
Nemeroff, M.E.2
Krug, R.M.3
-
16
-
-
33847333917
-
An RNA conformational shift in recent H5N1 influenza A viruses
-
Gultyaev AP, Heus HA, Olsthoorn RC, (2007) An RNA conformational shift in recent H5N1 influenza A viruses. Bioinformatics 23: 272-276.
-
(2007)
Bioinformatics
, vol.23
, pp. 272-276
-
-
Gultyaev, A.P.1
Heus, H.A.2
Olsthoorn, R.C.3
-
17
-
-
77953753310
-
A family of non-classical pseudoknots in influenza A and B viruses
-
Gultyaev AP, Olsthoorn RC, (2010) A family of non-classical pseudoknots in influenza A and B viruses. RNA Biol 7: 125-129.
-
(2010)
RNA Biol
, vol.7
, pp. 125-129
-
-
Gultyaev, A.P.1
Olsthoorn, R.C.2
-
18
-
-
0035863847
-
Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3′ splice site and its cis-regulatory element: possible involvement in RNA splicing
-
Jacquenet S, Ropers D, Bilodeau PS, Damier L, Mougin A, et al. (2001) Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3′ splice site and its cis-regulatory element: possible involvement in RNA splicing. Nucleic Acids Res 29: 464-478.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 464-478
-
-
Jacquenet, S.1
Ropers, D.2
Bilodeau, P.S.3
Damier, L.4
Mougin, A.5
-
19
-
-
33846925650
-
Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes
-
Singh NN, Singh RN, Androphy EJ, (2007) Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes. Nucleic Acids Res 35: 371-389.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 371-389
-
-
Singh, N.N.1
Singh, R.N.2
Androphy, E.J.3
-
20
-
-
0036785546
-
A secondary structure that contains the 5′ and 3′ splice sites suppresses splicing of duck hepatitis B virus pregenomic RNA
-
Loeb DD, Mack AA, Tian R, (2002) A secondary structure that contains the 5′ and 3′ splice sites suppresses splicing of duck hepatitis B virus pregenomic RNA. J Virol 76: 10195-10202.
-
(2002)
J Virol
, vol.76
, pp. 10195-10202
-
-
Loeb, D.D.1
Mack, A.A.2
Tian, R.3
-
21
-
-
0024465787
-
A secondary structure at the 3′ splice site affects the in vitro splicing reaction of mouse immunoglobulin mu chain pre-mRNAs
-
Watakabe A, Inoue K, Sakamoto H, Shimura Y, (1989) A secondary structure at the 3′ splice site affects the in vitro splicing reaction of mouse immunoglobulin mu chain pre-mRNAs. Nucleic Acids Res 17: 8159-8169.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 8159-8169
-
-
Watakabe, A.1
Inoue, K.2
Sakamoto, H.3
Shimura, Y.4
-
22
-
-
0032913877
-
Regulation of fibronectin EDA exon alternative splicing: possible role of RNA secondary structure for enhancer display
-
Muro AF, Caputi M, Pariyarath R, Pagani F, Buratti E, et al. (1999) Regulation of fibronectin EDA exon alternative splicing: possible role of RNA secondary structure for enhancer display. Mol Cell Biol 19: 2657-2671.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 2657-2671
-
-
Muro, A.F.1
Caputi, M.2
Pariyarath, R.3
Pagani, F.4
Buratti, E.5
-
23
-
-
0025914142
-
Identification of a specific exon sequence that is a major determinant in the selection between a natural and a cryptic 5′ splice site
-
Domenjoud L, Gallinaro H, Kister L, Meyer S, Jacob M, (1991) Identification of a specific exon sequence that is a major determinant in the selection between a natural and a cryptic 5′ splice site. Mol Cell Biol 11: 4581-4590.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 4581-4590
-
-
Domenjoud, L.1
Gallinaro, H.2
Kister, L.3
Meyer, S.4
Jacob, M.5
-
24
-
-
1642458353
-
RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon
-
Buratti E, Muro AF, Giombi M, Gherbassi D, Iaconcig A, et al. (2004) RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol Cell Biol 24: 1387-1400.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 1387-1400
-
-
Buratti, E.1
Muro, A.F.2
Giombi, M.3
Gherbassi, D.4
Iaconcig, A.5
-
25
-
-
0032491152
-
Inhibitors of protein-RNA complexation that target the RNA: specific recognition of human immunodeficiency virus type 1 TAR RNA by small organic molecules
-
Mei HY, Cui M, Heldsinger A, Lemrow SM, Loo JA, et al. (1998) Inhibitors of protein-RNA complexation that target the RNA: specific recognition of human immunodeficiency virus type 1 TAR RNA by small organic molecules. Biochemistry 37: 14204-14212.
-
(1998)
Biochemistry
, vol.37
, pp. 14204-14212
-
-
Mei, H.Y.1
Cui, M.2
Heldsinger, A.3
Lemrow, S.M.4
Loo, J.A.5
-
27
-
-
0034045479
-
Targeting RNA with small molecules
-
Wilson WD, Li K, (2000) Targeting RNA with small molecules. Curr Med Chem 7: 73-98.
-
(2000)
Curr Med Chem
, vol.7
, pp. 73-98
-
-
Wilson, W.D.1
Li, K.2
-
28
-
-
50249089546
-
Two-dimensional combinatorial screening identifies specific aminoglycoside-RNA internal loop partners
-
Disney MD, Labuda LP, Paul DJ, Poplawski SG, Pushechnikov A, et al. (2008) Two-dimensional combinatorial screening identifies specific aminoglycoside-RNA internal loop partners. J Am Chem Soc 130: 11185-11194.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 11185-11194
-
-
Disney, M.D.1
Labuda, L.P.2
Paul, D.J.3
Poplawski, S.G.4
Pushechnikov, A.5
-
29
-
-
65649087836
-
Small molecule microarrays of RNA-focused peptoids help identify inhibitors of a pathogenic group I intron
-
Labuda LP, Pushechnikov A, Disney MD, (2009) Small molecule microarrays of RNA-focused peptoids help identify inhibitors of a pathogenic group I intron. ACS Chem Biol 4: 299-307.
-
(2009)
ACS Chem Biol
, vol.4
, pp. 299-307
-
-
Labuda, L.P.1
Pushechnikov, A.2
Disney, M.D.3
-
30
-
-
0037143606
-
Oligonucleotide directed misfolding of RNA inhibits Candida albicans group I intron splicing
-
Childs JL, Disney MD, Turner DH, (2002) Oligonucleotide directed misfolding of RNA inhibits Candida albicans group I intron splicing. Proc Natl Acad Sci U S A 99: 11091-11096.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 11091-11096
-
-
Childs, J.L.1
Disney, M.D.2
Turner, D.H.3
-
31
-
-
0347763700
-
New approaches to targeting RNA with oligonucleotides: inhibition of group I intron self-splicing
-
Disney MD, Childs JL, Turner DH, (2004) New approaches to targeting RNA with oligonucleotides: inhibition of group I intron self-splicing. Biopolymers 73: 151-161.
-
(2004)
Biopolymers
, vol.73
, pp. 151-161
-
-
Disney, M.D.1
Childs, J.L.2
Turner, D.H.3
-
32
-
-
73149101873
-
Binding of short oligonucleotides to RNA: studies of the binding of common RNA structural motifs to isoenergetic microarrays
-
Kierzek E, (2009) Binding of short oligonucleotides to RNA: studies of the binding of common RNA structural motifs to isoenergetic microarrays. Biochemistry 48: 11344-11356.
-
(2009)
Biochemistry
, vol.48
, pp. 11344-11356
-
-
Kierzek, E.1
-
33
-
-
0023665268
-
Probing the structure of RNAs in solution
-
Ehresmann C, Baudin F, Mougel M, Romby P, Ebel JP, et al. (1987) Probing the structure of RNAs in solution. Nucleic Acids Res 15: 9109-9128.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 9109-9128
-
-
Ehresmann, C.1
Baudin, F.2
Mougel, M.3
Romby, P.4
Ebel, J.P.5
-
34
-
-
0343308108
-
Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs
-
Ciesiolka J, Michalowski D, Wrzesinski J, Krajewski J, Krzyzosiak WJ, (1998) Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs. J Mol Biol 275: 211-220.
-
(1998)
J Mol Biol
, vol.275
, pp. 211-220
-
-
Ciesiolka, J.1
Michalowski, D.2
Wrzesinski, J.3
Krajewski, J.4
Krzyzosiak, W.J.5
-
35
-
-
82355192643
-
Pb2+ -induced cleavage of RNA
-
In: Hartmann R, Bindereif A, Schon A, Westhof E, editors, Weinheim, WILEY-VCH
-
Kirsebom L, Ciesiolka J, (2005) Pb2+-induced cleavage of RNA. In: Hartmann R, Bindereif A, Schon A, Westhof E, editors. Handbook of RNA Biochemistry Weinheim WILEY-VCH pp. 214-228.
-
(2005)
Handbook of RNA Biochemistry
, pp. 214-228
-
-
Kirsebom, L.1
Ciesiolka, J.2
-
36
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
-
Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM, (2005) RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc 127: 4223-4231.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
37
-
-
34547619754
-
A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2′-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes
-
Pasternak A, Kierzek E, Pasternak K, Turner DH, Kierzek R, (2007) A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2′-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes. Nucleic Acids Res 35: 4055-4063.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4055-4063
-
-
Pasternak, A.1
Kierzek, E.2
Pasternak, K.3
Turner, D.H.4
Kierzek, R.5
-
38
-
-
67549143784
-
Secondary structures for 5′ regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints
-
Kierzek E, Christensen SM, Eickbush TH, Kierzek R, Turner DH, et al. (2009) Secondary structures for 5′ regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints. J Mol Biol 390: 428-442.
-
(2009)
J Mol Biol
, vol.390
, pp. 428-442
-
-
Kierzek, E.1
Christensen, S.M.2
Eickbush, T.H.3
Kierzek, R.4
Turner, D.H.5
-
39
-
-
38849169886
-
The thermodynamics of 3′-terminal pyrene and guanosine for the design of isoenergetic 2′-O-methyl-RNA-LNA chimeric oligonucleotide probes of RNA structure
-
Pasternak A, Kierzek E, Pasternak K, Fratczak A, Turner DH, et al. (2008) The thermodynamics of 3′-terminal pyrene and guanosine for the design of isoenergetic 2′-O-methyl-RNA-LNA chimeric oligonucleotide probes of RNA structure. Biochemistry 47: 1249-1258.
-
(2008)
Biochemistry
, vol.47
, pp. 1249-1258
-
-
Pasternak, A.1
Kierzek, E.2
Pasternak, K.3
Fratczak, A.4
Turner, D.H.5
-
40
-
-
25144497136
-
The influence of locked nucleic acid residues on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes
-
Kierzek E, Ciesielska A, Pasternak K, Mathews DH, Turner DH, et al. (2005) The influence of locked nucleic acid residues on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes. Nucleic Acids Res 33: 5082-5093.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5082-5093
-
-
Kierzek, E.1
Ciesielska, A.2
Pasternak, K.3
Mathews, D.H.4
Turner, D.H.5
-
41
-
-
10944240992
-
Influenza: old and new threats
-
Palese P, (2004) Influenza: old and new threats. Nat Med 10: S82-87.
-
(2004)
Nat Med
, vol.10
-
-
Palese, P.1
-
42
-
-
0038502443
-
Influenza as a bioweapon
-
Madjid M, Lillibridge S, Mirhaji P, Casscells W, (2003) Influenza as a bioweapon. J R Soc Med 96: 345-346.
-
(2003)
J R Soc Med
, vol.96
, pp. 345-346
-
-
Madjid, M.1
Lillibridge, S.2
Mirhaji, P.3
Casscells, W.4
-
43
-
-
0037282358
-
The potential use of influenza virus as an agent for bioterrorism
-
Krug RM, (2003) The potential use of influenza virus as an agent for bioterrorism. Antiviral Res 57: 147-150.
-
(2003)
Antiviral Res
, vol.57
, pp. 147-150
-
-
Krug, R.M.1
-
45
-
-
0037286318
-
The treatment of influenza with antiviral drugs
-
Stiver G, (2003) The treatment of influenza with antiviral drugs. CMAJ 168: 49-56.
-
(2003)
CMAJ
, vol.168
, pp. 49-56
-
-
Stiver, G.1
-
46
-
-
0025780938
-
Unexpected point mutations activate cryptic 3′ splice sites by perturbing a natural secondary structure within a yeast intron
-
Deshler JO, Rossi JJ, (1991) Unexpected point mutations activate cryptic 3′ splice sites by perturbing a natural secondary structure within a yeast intron. Genes Dev 5: 1252-1263.
-
(1991)
Genes Dev
, vol.5
, pp. 1252-1263
-
-
Deshler, J.O.1
Rossi, J.J.2
-
47
-
-
0029804920
-
Function of a pseudoknot in the suppression of an alternative splicing event in a group I intron
-
Jaeger L, Westhof E, Michel F, (1996) Function of a pseudoknot in the suppression of an alternative splicing event in a group I intron. Biochimie 78: 466-473.
-
(1996)
Biochimie
, vol.78
, pp. 466-473
-
-
Jaeger, L.1
Westhof, E.2
Michel, F.3
-
48
-
-
77649158879
-
Role of RNA structure in regulating pre-mRNA splicing
-
Warf MB, Berglund JA, (2010) Role of RNA structure in regulating pre-mRNA splicing. Trends Biochem Sci 35: 169-178.
-
(2010)
Trends Biochem Sci
, vol.35
, pp. 169-178
-
-
Warf, M.B.1
Berglund, J.A.2
-
49
-
-
67249165478
-
The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing
-
Warf MB, Diegel JV, von Hippel PH, Berglund JA, (2009) The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing. Proc Natl Acad Sci U S A 106: 9203-9208.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 9203-9208
-
-
Warf, M.B.1
Diegel, J.V.2
von Hippel, P.H.3
Berglund, J.A.4
-
50
-
-
0036318541
-
Regulation of alternative splicing by the ATP-dependent DEAD-box RNA helicase p72
-
Honig A, Auboeuf D, Parker MM, O'Malley BW, Berget SM, (2002) Regulation of alternative splicing by the ATP-dependent DEAD-box RNA helicase p72. Mol Cell Biol 22: 5698-5707.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 5698-5707
-
-
Honig, A.1
Auboeuf, D.2
Parker, M.M.3
O'Malley, B.W.4
Berget, S.M.5
-
51
-
-
34249278470
-
Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
-
Cheah MT, Wachter A, Sudarsan N, Breaker RR, (2007) Control of alternative RNA splicing and gene expression by eukaryotic riboswitches. Nature 447: 497-500.
-
(2007)
Nature
, vol.447
, pp. 497-500
-
-
Cheah, M.T.1
Wachter, A.2
Sudarsan, N.3
Breaker, R.R.4
-
52
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
Winkler W, Nahvi A, Breaker RR, (2002) Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419: 952-956.
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
53
-
-
0033527326
-
Thermodynamics of stabilization of RNA pseudoknots by cobalt(III) hexaammine
-
Nixon PL, Theimer CA, Giedroc DP, (1999) Thermodynamics of stabilization of RNA pseudoknots by cobalt(III) hexaammine. Biopolymers 50: 443-458.
-
(1999)
Biopolymers
, vol.50
, pp. 443-458
-
-
Nixon, P.L.1
Theimer, C.A.2
Giedroc, D.P.3
-
54
-
-
0345299164
-
Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudoknot
-
Gonzalez RL Jr, Tinoco I Jr, (1999) Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudoknot. J Mol Biol 289: 1267-1282.
-
(1999)
J Mol Biol
, vol.289
, pp. 1267-1282
-
-
Gonzalez Jr., R.L.1
Tinoco Jr., I.2
-
55
-
-
0035830964
-
Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations
-
Heilman-Miller SL, Thirumalai D, Woodson SA, (2001) Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations. J Mol Biol 306: 1157-1166.
-
(2001)
J Mol Biol
, vol.306
, pp. 1157-1166
-
-
Heilman-Miller, S.L.1
Thirumalai, D.2
Woodson, S.A.3
-
56
-
-
0035946973
-
Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics
-
Heilman-Miller SL, Pan J, Thirumalai D, Woodson SA, (2001) Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics. J Mol Biol 309: 57-68.
-
(2001)
J Mol Biol
, vol.309
, pp. 57-68
-
-
Heilman-Miller, S.L.1
Pan, J.2
Thirumalai, D.3
Woodson, S.A.4
-
57
-
-
0034602926
-
Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches
-
Rudisser S, Tinoco I Jr, (2000) Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches. J Mol Biol 295: 1211-1223.
-
(2000)
J Mol Biol
, vol.295
, pp. 1211-1223
-
-
Rudisser, S.1
Tinoco Jr., I.2
-
58
-
-
77956622329
-
A flexible RNA backbone within the polypyrimidine tract is required for U2AF65 binding and pre-mRNA splicing in vivo
-
Chen C, Zhao X, Kierzek R, Yu YT, (2010) A flexible RNA backbone within the polypyrimidine tract is required for U2AF65 binding and pre-mRNA splicing in vivo. Mol Cell Biol 30: 4108-4119.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 4108-4119
-
-
Chen, C.1
Zhao, X.2
Kierzek, R.3
Yu, Y.T.4
-
59
-
-
0022433369
-
Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA
-
Brown RS, Dewan JC, Klug A, (1985) Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry 24: 4785-4801.
-
(1985)
Biochemistry
, vol.24
, pp. 4785-4801
-
-
Brown, R.S.1
Dewan, J.C.2
Klug, A.3
-
60
-
-
0027318824
-
Lead cleavage sites in the core structure of group I intron-RNA
-
Streicher B, von Ahsen U, Schroeder R, (1993) Lead cleavage sites in the core structure of group I intron-RNA. Nucleic Acids Res 21: 311-317.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 311-317
-
-
Streicher, B.1
von Ahsen, U.2
Schroeder, R.3
-
61
-
-
79952161658
-
siRNA for Influenza Therapy
-
Barik S, (2010) siRNA for Influenza Therapy. Viruses 2: 1448-1457.
-
(2010)
Viruses
, vol.2
, pp. 1448-1457
-
-
Barik, S.1
-
62
-
-
84863012654
-
Tiling genomes of pathogenic viruses identifies potent antiviral shRNAs and reveals a role for secondary structure in shRNA efficacy
-
Tan X, Lu ZJ, Gao G, Xu Q, Hu L, et al. (2012) Tiling genomes of pathogenic viruses identifies potent antiviral shRNAs and reveals a role for secondary structure in shRNA efficacy. Proc Natl Acad Sci U S A 109: 869-874.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 869-874
-
-
Tan, X.1
Lu, Z.J.2
Gao, G.3
Xu, Q.4
Hu, L.5
-
63
-
-
77956405791
-
Biochemical characterization of enzyme fidelity of influenza A virus RNA polymerase complex
-
Aggarwal S, Bradel-Tretheway B, Takimoto T, Dewhurst S, Kim B, (2010) Biochemical characterization of enzyme fidelity of influenza A virus RNA polymerase complex. PLoS One 5: e10372.
-
(2010)
PLoS One
, vol.5
-
-
Aggarwal, S.1
Bradel-Tretheway, B.2
Takimoto, T.3
Dewhurst, S.4
Kim, B.5
-
64
-
-
0001475194
-
Structure of an RNA internal loop consisting of tandem C-A+ base pairs
-
Jang SB, Hung LW, Chi YI, Holbrook EL, Carter RJ, et al. (1998) Structure of an RNA internal loop consisting of tandem C-A+ base pairs. Biochemistry 37: 11726-11731.
-
(1998)
Biochemistry
, vol.37
, pp. 11726-11731
-
-
Jang, S.B.1
Hung, L.W.2
Chi, Y.I.3
Holbrook, E.L.4
Carter, R.J.5
-
65
-
-
0028261409
-
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
-
Gutell RR, Larsen N, Woese CR, (1994) Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol Rev 58: 10-26.
-
(1994)
Microbiol Rev
, vol.58
, pp. 10-26
-
-
Gutell, R.R.1
Larsen, N.2
Woese, C.R.3
-
66
-
-
0024416246
-
Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA-a review
-
Pace NR, Smith DK, Olsen GJ, James BD, (1989) Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA-a review. Gene 82: 65-75.
-
(1989)
Gene
, vol.82
, pp. 65-75
-
-
Pace, N.R.1
Smith, D.K.2
Olsen, G.J.3
James, B.D.4
-
67
-
-
0034538974
-
Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA
-
Frank DN, Adamidi C, Ehringer MA, Pitulle C, Pace NR, (2000) Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA. RNA 6: 1895-1904.
-
(2000)
RNA
, vol.6
, pp. 1895-1904
-
-
Frank, D.N.1
Adamidi, C.2
Ehringer, M.A.3
Pitulle, C.4
Pace, N.R.5
-
68
-
-
0030761265
-
Subtle atomic group discrimination in the RNA minor groove
-
Frugier M, Schimmel P, (1997) Subtle atomic group discrimination in the RNA minor groove. Proc Natl Acad Sci U S A 94: 11291-11294.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 11291-11294
-
-
Frugier, M.1
Schimmel, P.2
-
69
-
-
0033485558
-
Non-Watson-Crick base pairs in RNA-protein recognition
-
Hermann T, Westhof E, (1999) Non-Watson-Crick base pairs in RNA-protein recognition. Chem Biol 6: R335-343.
-
(1999)
Chem Biol
, vol.6
-
-
Hermann, T.1
Westhof, E.2
-
70
-
-
0035967531
-
Recognition elements for 5′ exon substrate binding to the Candida albicans group I intron
-
Disney MD, Haidaris CG, Turner DH, (2001) Recognition elements for 5′ exon substrate binding to the Candida albicans group I intron. Biochemistry 40: 6507-6519.
-
(2001)
Biochemistry
, vol.40
, pp. 6507-6519
-
-
Disney, M.D.1
Haidaris, C.G.2
Turner, D.H.3
-
71
-
-
84860395322
-
NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions
-
Lerman YV, Kennedy SD, Shankar N, Parisien M, Major F, et al. (2011) NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions. RNA 17: 1664-1677.
-
(2011)
RNA
, vol.17
, pp. 1664-1677
-
-
Lerman, Y.V.1
Kennedy, S.D.2
Shankar, N.3
Parisien, M.4
Major, F.5
-
72
-
-
0033971758
-
Database of non-canonical base pairs found in known RNA structures
-
Nagaswamy U, Voss N, Zhang Z, Fox GE, (2000) Database of non-canonical base pairs found in known RNA structures. Nucleic Acids Res 28: 375-376.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 375-376
-
-
Nagaswamy, U.1
Voss, N.2
Zhang, Z.3
Fox, G.E.4
-
73
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
-
Ban N, Nissen P, Hansen J, Moore PB, Steitz TA, (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289: 905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
74
-
-
0031574326
-
The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins
-
Dallas A, Moore PB, (1997) The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins. Structure 5: 1639-1653.
-
(1997)
Structure
, vol.5
, pp. 1639-1653
-
-
Dallas, A.1
Moore, P.B.2
-
75
-
-
0034624979
-
The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability
-
Hung LW, Holbrook EL, Holbrook SR, (2000) The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability. Proc Natl Acad Sci U S A 97: 5107-5112.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 5107-5112
-
-
Hung, L.W.1
Holbrook, E.L.2
Holbrook, S.R.3
-
76
-
-
84857838609
-
Comprehensive survey and geometric classification of base triples in RNA structures
-
Abu Almakarem AS, Petrov AI, Stombaugh J, Zirbel CL, Leontis NB, (2011) Comprehensive survey and geometric classification of base triples in RNA structures. Nucleic Acids Res 40: 1407-1423.
-
(2011)
Nucleic Acids Res
, vol.40
, pp. 1407-1423
-
-
Abu Almakarem, A.S.1
Petrov, A.I.2
Stombaugh, J.3
Zirbel, C.L.4
Leontis, N.B.5
-
77
-
-
14644435818
-
Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function
-
Theimer CA, Blois CA, Feigon J, (2005) Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function. Mol Cell 17: 671-682.
-
(2005)
Mol Cell
, vol.17
, pp. 671-682
-
-
Theimer, C.A.1
Blois, C.A.2
Feigon, J.3
-
78
-
-
33748774169
-
Pairwise coupling analysis of helical junction hydrogen bonding interactions in luteoviral RNA pseudoknots
-
Cornish PV, Giedroc DP, (2006) Pairwise coupling analysis of helical junction hydrogen bonding interactions in luteoviral RNA pseudoknots. Biochemistry 45: 11162-11171.
-
(2006)
Biochemistry
, vol.45
, pp. 11162-11171
-
-
Cornish, P.V.1
Giedroc, D.P.2
-
79
-
-
35548966204
-
Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates
-
Ulyanov NB, Shefer K, James TL, Tzfati Y, (2007) Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates. Nucleic Acids Res 35: 6150-6160.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6150-6160
-
-
Ulyanov, N.B.1
Shefer, K.2
James, T.L.3
Tzfati, Y.4
-
80
-
-
77149158794
-
Predicting loop-helix tertiary structural contacts in RNA pseudoknots
-
Cao S, Giedroc DP, Chen SJ, (2010) Predicting loop-helix tertiary structural contacts in RNA pseudoknots. RNA 16: 538-552.
-
(2010)
RNA
, vol.16
, pp. 538-552
-
-
Cao, S.1
Giedroc, D.P.2
Chen, S.J.3
-
81
-
-
0032511143
-
Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot
-
Theimer CA, Wang Y, Hoffman DW, Krisch HM, Giedroc DP, (1998) Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot. J Mol Biol 279: 545-564.
-
(1998)
J Mol Biol
, vol.279
, pp. 545-564
-
-
Theimer, C.A.1
Wang, Y.2
Hoffman, D.W.3
Krisch, H.M.4
Giedroc, D.P.5
-
82
-
-
0033061281
-
An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2
-
Holland JA, Hansen MR, Du Z, Hoffman DW, (1999) An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2. RNA 5: 257-271.
-
(1999)
RNA
, vol.5
, pp. 257-271
-
-
Holland, J.A.1
Hansen, M.R.2
Du, Z.3
Hoffman, D.W.4
-
83
-
-
77952094583
-
Temperature sensitivity on growth and/or replication of H1N1, H1N2 and H3N2 influenza A viruses isolated from pigs and birds in mammalian cells
-
Massin P, Kuntz-Simon G, Barbezange C, Deblanc C, Oger A, et al. (2009) Temperature sensitivity on growth and/or replication of H1N1, H1N2 and H3N2 influenza A viruses isolated from pigs and birds in mammalian cells. Vet Microbiol 142: 232-241.
-
(2009)
Vet Microbiol
, vol.142
, pp. 232-241
-
-
Massin, P.1
Kuntz-Simon, G.2
Barbezange, C.3
Deblanc, C.4
Oger, A.5
-
84
-
-
84862012854
-
Influenza A Virus Coding Regions Posses Host-specific Global Ordered RNA Structure
-
Priore SF, Moss WN, Turner DH, (2012) Influenza A Virus Coding Regions Posses Host-specific Global Ordered RNA Structure. PLoS One 7: e35989.
-
(2012)
PLoS One
, vol.7
-
-
Priore, S.F.1
Moss, W.N.2
Turner, D.H.3
-
85
-
-
84862015810
-
Probing RNA folding pathways by RNA fingerprinting
-
Chapter 11: Unit 11
-
Woodson SA, (2001) Probing RNA folding pathways by RNA fingerprinting. Curr Protoc Nucleic Acid Chem Chapter 11: Unit 11 14.
-
(2001)
Curr Protoc Nucleic Acid Chem
, vol.14
-
-
Woodson, S.A.1
-
86
-
-
82355192643
-
Pb2+-induced Cleavage of RNA
-
In: Hartmann RK BA, Schon A, Westhof E, editors, Weinheim, Wiley-VCH
-
Kierebom L, Ciesiolka J, (2005) Pb2+-induced Cleavage of RNA. In: Hartmann RK BA, Schon A, Westhof E, editors. Handbook of RNA Biochemistry Weinheim Wiley-VCH pp. 214-228.
-
(2005)
Handbook of RNA Biochemistry
, pp. 214-228
-
-
Kierebom, L.1
Ciesiolka, J.2
-
87
-
-
43149100808
-
Probing RNA structure with chemical reagents and enzymes
-
Chapter 6: Unit 6
-
Ziehler WA, Engelke DR, (2001) Probing RNA structure with chemical reagents and enzymes. Curr Protoc Nucleic Acid Chem Chapter 6: Unit 6 1.
-
(2001)
Curr Protoc Nucleic Acid Chem
, vol.1
-
-
Ziehler, W.A.1
Engelke, D.R.2
-
88
-
-
33947720028
-
Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution
-
Wilkinson KA, Merino EJ, Weeks KM, (2006) Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1: 1610-1616.
-
(2006)
Nat Protoc
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
89
-
-
2442507000
-
Affordable image analysis using NIH Image/ImageJ
-
Girish V, Vijayalakshmi A, (2004) Affordable image analysis using NIH Image/ImageJ. Indian J Cancer 41: 47.
-
(2004)
Indian J Cancer
, vol.41
, pp. 47
-
-
Girish, V.1
Vijayalakshmi, A.2
-
90
-
-
38849104099
-
Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function
-
Kierzek E, Kierzek R, Moss WN, Christensen SM, Eickbush TH, et al. (2008) Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function. Nucleic Acids Res 36: 1770-1782.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1770-1782
-
-
Kierzek, E.1
Kierzek, R.2
Moss, W.N.3
Christensen, S.M.4
Eickbush, T.H.5
-
91
-
-
77956592559
-
Comparisons between chemical mapping and binding to isoenergetic oligonucleotide microarrays reveal unexpected patterns of binding to the Bacillus subtilis RNase P RNA specificity domain
-
Liang R, Kierzek E, Kierzek R, Turner DH, (2010) Comparisons between chemical mapping and binding to isoenergetic oligonucleotide microarrays reveal unexpected patterns of binding to the Bacillus subtilis RNase P RNA specificity domain. Biochemistry 49: 8155-8168.
-
(2010)
Biochemistry
, vol.49
, pp. 8155-8168
-
-
Liang, R.1
Kierzek, E.2
Kierzek, R.3
Turner, D.H.4
-
92
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia T, SantaLucia J Jr, Burkard ME, Kierzek R, Schroeder SJ, et al. (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 37: 14719-14735.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
SantaLucia Jr., J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
-
93
-
-
75549088409
-
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
-
Turner DH, Mathews DH, (2009) NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure. Nucleic Acids Res 38: D280-282.
-
(2009)
Nucleic Acids Res
, vol.38
-
-
Turner, D.H.1
Mathews, D.H.2
-
94
-
-
37849052232
-
The influenza virus resource at the National Center for Biotechnology Information
-
Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Zaslavsky L, et al. (2008) The influenza virus resource at the National Center for Biotechnology Information. J Virol 82: 596-601.
-
(2008)
J Virol
, vol.82
, pp. 596-601
-
-
Bao, Y.1
Bolotov, P.2
Dernovoy, D.3
Kiryutin, B.4
Zaslavsky, L.5
-
95
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
96
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
-
97
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, et al. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A 101: 7287-7292.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
-
98
-
-
84860124319
-
Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters
-
Chen JL, Dishler AL, Kennedy SD, Yildirim I, Liu B, et al. (2012) Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters. Biochemistry 51: 3508-3522.
-
(2012)
Biochemistry
, vol.51
, pp. 3508-3522
-
-
Chen, J.L.1
Dishler, A.L.2
Kennedy, S.D.3
Yildirim, I.4
Liu, B.5
-
99
-
-
33744547883
-
Predicting RNA pseudoknot folding thermodynamics
-
Cao S, Chen SJ, (2006) Predicting RNA pseudoknot folding thermodynamics. Nucleic Acids Res 34: 2634-2652.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2634-2652
-
-
Cao, S.1
Chen, S.J.2
|