-
2
-
-
0028239805
-
Crystal structure of unmodified tRNA-(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure
-
Arnez, J. G., and T. A. Steitz. 1994. Crystal structure of unmodified tRNA-(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure. Biochemistry 33:7560-7567.
-
(1994)
Biochemistry
, vol.33
, pp. 7560-7567
-
-
Arnez, J.G.1
Steitz, T.A.2
-
3
-
-
18844397555
-
RNA-guided RNA modification: Functional organization of the archaeal H/ACA RNP
-
Baker, D. L., O. A. Youssef, M. I. Chastkofsky, D. A. Dy, R. M. Terns, and M. P. Terns. 2005. RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP. Genes Dev. 19:1238-1248.
-
(2005)
Genes Dev.
, vol.19
, pp. 1238-1248
-
-
Baker, D.L.1
Youssef, O.A.2
Chastkofsky, M.I.3
Dy, D.A.4
Terns, R.M.5
Terns, M.P.6
-
4
-
-
0026661948
-
Protein components specifically associated with prespliceosome and spliceosome complexes
-
Bennett, M., S. Michaud, J. Kingston, and R. Reed. 1992. Protein components specifically associated with prespliceosome and spliceosome complexes. Genes Dev. 6:1986-2000.
-
(1992)
Genes Dev.
, vol.6
, pp. 1986-2000
-
-
Bennett, M.1
Michaud, S.2
Kingston, J.3
Reed, R.4
-
5
-
-
0001468848
-
Splicing of precursors to mRNAs by the spliceosome
-
R. F. Gesteland, T. R. Cech, and J. F. Atkins (ed.), 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Burge, C. B., T. Tuschl, and P. A. Sharp. 1999. Splicing of precursors to mRNAs by the spliceosome, p. 525-560. In R. F. Gesteland, T. R. Cech, and J. F. Atkins (ed.), The RNA world, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1999)
The RNA World
, pp. 525-560
-
-
Burge, C.B.1
Tuschl, T.2
Sharp, P.A.3
-
6
-
-
0033935223
-
Pseudouridine in RNA: What, where, how, and why
-
Charette, M., and M. W. Gray. 2000. Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49:341-351.
-
(2000)
IUBMB Life
, vol.49
, pp. 341-351
-
-
Charette, M.1
Gray, M.W.2
-
7
-
-
20144374350
-
Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation
-
DOI 10.1093/nar/gki630
-
Charpentier, B., S. Muller, and C. Branlant. 2005. Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation. Nucleic Acids Res. 33:3133-3144. (Pubitemid 41194457)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.10
, pp. 3133-3144
-
-
Charpentier, B.1
Muller, S.2
Branlant, C.3
-
8
-
-
0030750730
-
Evidence that U5 snRNP recognizes the 3′ splice site for catalytic step II in mammals
-
Chiara, M. D., L. Palandjian, R. Feld Kramer, and R. Reed. 1997. Evidence that U5 snRNP recognizes the 3′ splice site for catalytic step II in mammals. EMBO J. 16:4746-4759.
-
(1997)
EMBO J.
, vol.16
, pp. 4746-4759
-
-
Chiara, M.D.1
Palandjian, L.2
Feld Kramer, R.3
Reed, R.4
-
9
-
-
73849135282
-
Small Cajal body-specific RNAs of Drosophila function in the absence of Cajal bodies
-
Deryusheva, S., and J. G. Gall. 2009. Small Cajal body-specific RNAs of Drosophila function in the absence of Cajal bodies. Mol. Biol. Cell 20:5250-5259.
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 5250-5259
-
-
Deryusheva, S.1
Gall, J.G.2
-
10
-
-
65649140052
-
Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase
-
Duan, J., L. Li, J. Lu, W. Wang, and K. Ye. 2009. Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase. Mol. Cell 34:427-439.
-
(2009)
Mol. Cell
, vol.34
, pp. 427-439
-
-
Duan, J.1
Li, L.2
Lu, J.3
Wang, W.4
Ye, K.5
-
11
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
Ganot, P., M. L. Bortolin, and T. Kiss. 1997. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89:799-809. (Pubitemid 27516183)
-
(1997)
Cell
, vol.89
, Issue.5
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.-L.2
Kiss, T.3
-
12
-
-
0025787954
-
Biochemical mechanisms of constitutive and regulated pre-mRNA splicing
-
Green, M. R. 1991. Biochemical mechanisms of constitutive and regulated pre-mRNA splicing. Annu. Rev. Cell Biol. 7:559-599.
-
(1991)
Annu. Rev. Cell Biol.
, vol.7
, pp. 559-599
-
-
Green, M.R.1
-
13
-
-
0042671357
-
Pre-mRNA splicing: Awash in a sea of proteins
-
Jurica, M. S., and M. J. Moore. 2003. Pre-mRNA splicing: awash in a sea of proteins. Mol. Cell 12:5-14.
-
(2003)
Mol. Cell
, vol.12
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
14
-
-
25144497136
-
The influence of locked nucleic acid residues on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes
-
DOI 10.1093/nar/gki789
-
Kierzek, E., A. Ciesielska, K. Pasternak, D. H. Mathews, D. H. Turner, and R. Kierzek. 2005. The influence of locked nucleic acid residues on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes. Nucleic Acids Res. 33:5082-5093. (Pubitemid 41487816)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.16
, pp. 5082-5093
-
-
Kierzek, E.1
Ciesielska, A.2
Pasternak, K.3
Mathews, D.H.4
Turner, D.H.5
Kierzek, R.6
-
15
-
-
33745035687
-
In vivo assembly of functional U7 snRNP requires RNA backbone flexibility within the Sm-binding site
-
Kolev, N. G., and J. A. Steitz. 2006. In vivo assembly of functional U7 snRNP requires RNA backbone flexibility within the Sm-binding site. Nat. Struct. Mol. Biol. 13:347-353.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 347-353
-
-
Kolev, N.G.1
Steitz, J.A.2
-
16
-
-
0024806953
-
Analysis of splicing complexes and small nuclear ribonucleoprotein particles by native gel electrophoresis
-
Konarska, M. M. 1989. Analysis of splicing complexes and small nuclear ribonucleoprotein particles by native gel electrophoresis. Methods Enzymol. 180:442-453.
-
(1989)
Methods Enzymol.
, vol.180
, pp. 442-453
-
-
Konarska, M.M.1
-
17
-
-
0019570066
-
Monoclonal antibodies to nucleic acid-containing cellular constituents: Probes for molecular biology and autoimmune disease
-
Lerner, E. A., M. R. Lerner, C. A. Janeway, Jr., and J. A. Steitz. 1981. Monoclonal antibodies to nucleic acid-containing cellular constituents: probes for molecular biology and autoimmune disease. Proc. Natl. Acad. Sci. U. S. A. 78:2737-2741.
-
(1981)
Proc. Natl. Acad. Sci. U. S. A.
, vol.78
, pp. 2737-2741
-
-
Lerner, E.A.1
Lerner, M.R.2
Janeway Jr., C.A.3
Steitz, J.A.4
-
18
-
-
67650340746
-
Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA
-
Liang, B., J. Zhou, E. Kahen, R. M. Terns, M. P. Terns, and H. Li. 2009. Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA. Nat. Struct. Mol. Biol. 16:740-746.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 740-746
-
-
Liang, B.1
Zhou, J.2
Kahen, E.3
Terns, R.M.4
Terns, M.P.5
Li, H.6
-
19
-
-
37349128219
-
rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity
-
Liang, X. H., Q. Liu, and M. J. Fournier. 2007. rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Mol. Cell 28:965-977.
-
(2007)
Mol. Cell
, vol.28
, pp. 965-977
-
-
Liang, X.H.1
Liu, Q.2
Fournier, M.J.3
-
20
-
-
0036218355
-
The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA
-
Liang, X. H., Y. X. Xu, and S. Michaeli. 2002. The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA. RNA 8:237-246.
-
(2002)
RNA
, vol.8
, pp. 237-246
-
-
Liang, X.H.1
Xu, Y.X.2
Michaeli, S.3
-
21
-
-
0002425959
-
Posttranscriptional modifications in the U small nuclear RNAs
-
H. Grosjean (ed.), ASM Press, Washington, DC
-
Massenet, S., A. Mougin, and C. Branlant. 1998. Posttranscriptional modifications in the U small nuclear RNAs, p. 201-228. In H. Grosjean (ed.), Modification and editing of RNA. ASM Press, Washington, DC.
-
(1998)
Modification and Editing of RNA
, pp. 201-228
-
-
Massenet, S.1
Mougin, A.2
Branlant, C.3
-
22
-
-
0001877802
-
Splicing of precursors to mRNAs by the spliceosome
-
R. F. Gesteland and J. F. Atkins (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Moore, M. J., C. C. Query, and P. A. Sharp. 1993. Splicing of precursors to mRNAs by the spliceosome, p. 303-357. In R. F. Gesteland and J. F. Atkins (ed.), The RNA world. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1993)
The RNA World
, pp. 303-357
-
-
Moore, M.J.1
Query, C.C.2
Sharp, P.A.3
-
23
-
-
0036789890
-
Investigation of Overhauser effects between pseudouridine and water protons in RNA helices
-
Newby, M. I., and N. L. Greenbaum. 2002. Investigation of Overhauser effects between pseudouridine and water protons in RNA helices. Proc. Natl. Acad. Sci. U. S. A. 99:12697-12702.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 12697-12702
-
-
Newby, M.I.1
Greenbaum, N.L.2
-
24
-
-
0030771087
-
Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
-
Ni, J., A. L. Tien, and M. J. Fournier. 1997. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89:565-573.
-
(1997)
Cell
, vol.89
, pp. 565-573
-
-
Ni, J.1
Tien, A.L.2
Fournier, M.J.3
-
25
-
-
0002387035
-
The pseudouridine residues of rRNA: Number, location, biosynthesis, and function
-
H. Grosjean and R. Benne (ed.), ASM Press, Washington, DC
-
Ofengand, J., and M. Fournier. 1998. The pseudouridine residues of rRNA: number, location, biosynthesis, and function., p. 229-253. In H. Grosjean and R. Benne (ed.), Modification and editing of RNA. ASM Press, Washington, DC.
-
(1998)
Modification and Editing of RNA
, pp. 229-253
-
-
Ofengand, J.1
Fournier, M.2
-
26
-
-
0034069505
-
Mechanisms of fidelity in pre-mRNA splicing
-
Reed, R. 2000. Mechanisms of fidelity in pre-mRNA splicing. Curr. Opin. Cell Biol. 12:340-345.
-
(2000)
Curr. Opin. Cell Biol.
, vol.12
, pp. 340-345
-
-
Reed, R.1
-
27
-
-
52249083736
-
Splicing by exon exclusion impaired by artificial box c/d RNA targeted to branch-point adenosine
-
Semenov, D. V., O. V. Vratskih, E. V. Kuligina, and V. A. Richter. 2008. Splicing by exon exclusion impaired by artificial box c/d RNA targeted to branch-point adenosine. Ann. N. Y. Acad. Sci. 1137:119-124.
-
(2008)
Ann. N. Y. Acad. Sci.
, vol.1137
, pp. 119-124
-
-
Semenov, D.V.1
Vratskih, O.V.2
Kuligina, E.V.3
Richter, V.A.4
-
28
-
-
0028307171
-
Split genes and RNA splicing
-
Sharp, P. A. 1994. Split genes and RNA splicing. Cell 77:805-815.
-
(1994)
Cell
, vol.77
, pp. 805-815
-
-
Sharp, P.A.1
-
29
-
-
33745499067
-
Structural basis for polypyrimidine tract recognition by the essential pre-mRNA splicing factor U2AF65
-
Sickmier, E. A., K. E. Frato, H. Shen, S. R. Paranawithana, M. R. Green, and C. L. Kielkopf. 2006. Structural basis for polypyrimidine tract recognition by the essential pre-mRNA splicing factor U2AF65. Mol. Cell 23:49-59.
-
(2006)
Mol. Cell
, vol.23
, pp. 49-59
-
-
Sickmier, E.A.1
Frato, K.E.2
Shen, H.3
Paranawithana, S.R.4
Green, M.R.5
Kielkopf, C.L.6
-
30
-
-
0034098296
-
Differential recognition of the polypyrimidine-tract by the general splicing factor U2AF65 and the splicing repressor sex-lethal
-
Singh, R., H. Banerjee, and M. R. Green. 2000. Differential recognition of the polypyrimidine-tract by the general splicing factor U2AF65 and the splicing repressor sex-lethal. RNA 6:901-911.
-
(2000)
RNA
, vol.6
, pp. 901-911
-
-
Singh, R.1
Banerjee, H.2
Green, M.R.3
-
31
-
-
0029055472
-
Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins
-
Singh, R., J. Valcarcel, and M. R. Green. 1995. Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science 268:1173-1176.
-
(1995)
Science
, vol.268
, pp. 1173-1176
-
-
Singh, R.1
Valcarcel, J.2
Green, M.R.3
-
32
-
-
0032489021
-
Mechanical devices of the spliceosome: Motors, clocks, springs, and things
-
Staley, J. P., and C. Guthrie. 1998. Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92:315-326.
-
(1998)
Cell
, vol.92
, pp. 315-326
-
-
Staley, J.P.1
Guthrie, C.2
-
33
-
-
47249139030
-
Functional roles of spliceosomal snRNA modifications in pre-mRNA splicing
-
H. C. Smith (ed.), John Wiley & Sons, Hoboken, NJ
-
Stephenson, D., J. Karijolich, and Y. T. Yu. 2008. Functional roles of spliceosomal snRNA modifications in pre-mRNA splicing, p. 175-189. In H. C. Smith (ed.), RNA and DNA editing. John Wiley & Sons, Hoboken, NJ.
-
(2008)
RNA and DNA Editing
, pp. 175-189
-
-
Stephenson, D.1
Karijolich, J.2
Yu, Y.T.3
-
34
-
-
38949098164
-
Signal-regulated pre-mRNA occupancy by the general splicing factor U2AF
-
Tisserant, A., and H. Konig. 2008. Signal-regulated pre-mRNA occupancy by the general splicing factor U2AF. PLoS One 3:e1418.
-
(2008)
PLoS One
, vol.3
-
-
Tisserant, A.1
Konig, H.2
-
35
-
-
0001619710
-
A linear relationship between electronegativity of 2′-substituents and conformation of adenine nucleosides
-
Uesugi, S., H. Miki, M. Ikehara, H. Iwahashi, and Y. Kyogoku. 1979. A linear relationship between electronegativity of 2′-substituents and conformation of adenine nucleosides. Tetrahedron Lett. 20:4073-4076.
-
(1979)
Tetrahedron Lett.
, vol.20
, pp. 4073-4076
-
-
Uesugi, S.1
Miki, H.2
Ikehara, M.3
Iwahashi, H.4
Kyogoku, Y.5
-
36
-
-
0027400786
-
The protein Sex-lethal antagonizes the splicing factor U2AF to regulate alternative splicing of transformer pre-mRNA
-
Valcarcel, J., R. Singh, P. D. Zamore, and M. R. Green. 1993. The protein Sex-lethal antagonizes the splicing factor U2AF to regulate alternative splicing of transformer pre-mRNA. Nature 362:171-175.
-
(1993)
Nature
, vol.362
, pp. 171-175
-
-
Valcarcel, J.1
Singh, R.2
Zamore, P.D.3
Green, M.R.4
-
37
-
-
2442542173
-
Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins
-
Wang, C., and U. T. Meier. 2004. Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins. EMBO J. 23:1857-1867.
-
(2004)
EMBO J.
, vol.23
, pp. 1857-1867
-
-
Wang, C.1
Meier, U.T.2
-
38
-
-
58149095476
-
Functionality and substrate specificity of human box H/ACA guide RNAs
-
Xiao, M., C. Yang, P. Schattner, and Y. T. Yu. 2009. Functionality and substrate specificity of human box H/ACA guide RNAs. RNA 15:176-186.
-
(2009)
RNA
, vol.15
, pp. 176-186
-
-
Xiao, M.1
Yang, C.2
Schattner, P.3
Yu, Y.T.4
-
39
-
-
0033654208
-
Site-specific 4-thiouridine incorporation into RNA molecules
-
Yu, Y. T. 2000. Site-specific 4-thiouridine incorporation into RNA molecules. Methods Enzymol. 318:71-88.
-
(2000)
Methods Enzymol.
, vol.318
, pp. 71-88
-
-
Yu, Y.T.1
-
40
-
-
0000996356
-
The growing world of small nuclear ribonucleoproteins
-
R. F. Gesteland, T. R. Cech, and J. F. Atkins (ed.), 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Yu, Y. T., E. C. Scharl, C. M. Smith, and J. A. Steitz. 1999. The growing world of small nuclear ribonucleoproteins, p. 487-524. In R. F. Gesteland, T. R. Cech, and J. F. Atkins (ed.), The RNA world, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1999)
The RNA World
, pp. 487-524
-
-
Yu, Y.T.1
Scharl, E.C.2
Smith, C.M.3
Steitz, J.A.4
-
41
-
-
0032189145
-
Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing
-
Yu, Y. T., M. D. Shu, and J. A. Steitz. 1998. Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J. 17:5783-5795.
-
(1998)
EMBO J.
, vol.17
, pp. 5783-5795
-
-
Yu, Y.T.1
Shu, M.D.2
Steitz, J.A.3
-
42
-
-
18844369530
-
Mechanisms and functions of RNA-guided RNA modification
-
Yu, Y. T., R. M. Terns, and M. P. Terns. 2005. Mechanisms and functions of RNA-guided RNA modification. Top. Curr. Genet. 12:223-262.
-
(2005)
Top. Curr. Genet.
, vol.12
, pp. 223-262
-
-
Yu, Y.T.1
Terns, R.M.2
Terns, M.P.3
-
43
-
-
0024408832
-
Identification, purification, and biochemical characterization of U2 small nuclear ribonucleoprotein auxiliary factor
-
Zamore, P. D., and M. R. Green. 1989. Identification, purification, and biochemical characterization of U2 small nuclear ribonucleoprotein auxiliary factor. Proc. Natl. Acad. Sci. U. S. A. 86:9243-9247.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 9243-9247
-
-
Zamore, P.D.1
Green, M.R.2
-
44
-
-
0036913514
-
An H/ACA guide RNA directs U2 pseudouridylation at two different sites in the branch-point recognition region in Xenopus oocytes
-
Zhao, X., Z. H. Li, R. M. Terns, M. P. Terns, and Y. T. Yu. 2002. An H/ACA guide RNA directs U2 pseudouridylation at two different sites in the branch-point recognition region in Xenopus oocytes. RNA 8:1515-1525.
-
(2002)
RNA
, vol.8
, pp. 1515-1525
-
-
Zhao, X.1
Li, Z.H.2
Terns, R.M.3
Terns, M.P.4
Yu, Y.T.5
-
45
-
-
37749034810
-
Targeted pre-mRNA modification for gene silencing and regulation
-
Zhao, X., and Y. T. Yu. 2008. Targeted pre-mRNA modification for gene silencing and regulation. Nat. Methods 5:95-100.
-
(2008)
Nat. Methods
, vol.5
, pp. 95-100
-
-
Zhao, X.1
Yu, Y.T.2
|