Structure of an RNA internal loop consisting of tandem C-A+ base pairs

Biochemistry

Volumn 37, Issue 34, 1998, Pages 11726-11731

  Jang, Se Bok ^a   Hung, Li Wei ^a   Chi, Young In ^a   Holbrook, Elizabeth L ^a   Carter, Richard J ^a   Holbrook, Stephen R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ARTICLE; BASE PAIRING; CRYSTAL STRUCTURE; PRIORITY JOURNAL; RNA STRUCTURE; STRUCTURE ACTIVITY RELATION; STRUCTURE ANALYSIS; X RAY DIFFRACTION;

ADENINE; BASE COMPOSITION; CRYSTALLOGRAPHY, X-RAY; CYTOSINE; HYDROGEN BONDING; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; OLIGORIBONUCLEOTIDES; RNA; THERMODYNAMICS;

EID: 0001475194     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980758j     Document Type: Article

References (39)

1. Holbrook, S. R., Cheong, C., Tinoco, I., Jr., and Kim, S.-H. (1991) Nature 353, 579-581.
2. Baeyens, K. J., DeBondt, H. L., and Holbrook, S. R. (1995) Nat. Struct. Biol. 2, 56-62.
3. Baeyens, K. J., De Bondt, H. L., Pardi, A., and Holbrook, S. R. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 12851-12855.
4. Carter, R. J., Baeyens, K. J., SantaLucia, J., Turner, D. H., and Holbrook, S. R. (1997) Nucleic Acids Res. 25, 4117-4122.
5. Lietzke, S. E., Barnes, C. L., Berglund, J. A., and Kundrot, C. E. (1996) Structure 4, 917-930.
6. Bartel, D. P., Zapp, M. L., Green, M. R., and Szostak, J. W. (1991) Cell 67, 529-536.
7. Dallas, A., and Moore, P. B. (1997) Structure 5, 1639-1653.
8. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Szewczak, A. A., Kundrot, C. E., Cech, T. L., and Doudna, J. A. (1996) Science 273, 1696-1699.
9. Cai, Z., and Tinoco, I., Jr. (1996) Biochemistry 35, 6026-6036.
10. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Kundrot, C. E., Cech, T. R., and Doudna, J. A. (1996) Science 273, 1678-1685.
11. Battiste, J. L., Tan, R., Frankel, A. D., and Williamson, J. R. (1994) Biochemistry 33, 2741-2747.
12. SantaLucia, J., Jr., Kierzek, R., and Turner, D. H. (1990) Biochemistry 29, 8813-8819.
13. Heus, H. A., Wijmenga, S. S., Hoppe, H., and Hilbers, C. W. (1997) J. Mol. Biol. 271, 147-158.
14. Hunter, W. N., Brown, T., Anand, N. N., and Kennard, O. (1986) Nature 320, 552-555.
15. Boulard, Y., Cognet, J. A., and Fazakerley, G. V. (1997) J. Mol. Biol. 268, 331-347.
16. Yu, A., Barron, M. D., Romero, R. M., Christy, M., Gold, B., Dai, J., Gray, D. M., Haworth, I. S., and Mitas, M. (1997) Biochemistry 36, 3687-3699.
17. Wu, M., and Turner, D. H. (1996) Biochemistry 35, 9677-9689.
18. Brunger, A. T., Adams, P. D., and Rice, L. M. (1997) Structure 15, 325-336.
19. Brunger, A. T. (1992) Nature 355, 472-475.
20. Adams, P. D., Pannu, N. S., Read, R. J., and Brunger, A. T. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 5018-5023.
21. Parkinson, G., Vojtechovsky, J., Clowney, L., Brunger, A. T., and Berman, H. M. (1996) Acta Crystallogr. D52, 57-64.
22. Lavery, R., and Sklenar, H. (1989) J. Biomol. Struct. Dyn. 6, 655-667.
23. Holbrook, S. R. (1997) in Molecular Modeling of Nucleic Acids (Neocles, J., Leontis, B., and SantaLucia, J., Eds.) pp 56-76, American Chemical Society, Washington, DC.
24. Puglisi, J. D., Wyatt, J. R., and Tinoco, I., Jr. (1990) Biochemistry 29, 4215-4226.
25. SantaLucia, J., Jr., Kierzek, R., and Turner, D. H. (1991) Biochemistry 30, 8243-8250.
26. Wu, M., McDowell, J. A., and Turner, D. H. (1995) Biochemistry 34, 3204-3211.
27. Brown, T., Leonard, G. A., Booth, E. D., and Kneale, G. (1990) J. Mol. Biol. 212, 437-440.
28. Gutell, R. R. (1995) in Ribosomal RNA: Structure, evolution, processing, and function protein biosynthesis (Zimmerman, R. A., and Dahlberg, A. E., Eds.) pp 109-126, CRC Press, Boca Raton, FL.
29. Gautheret, D., Konings, D., and Gutell, R. R. (1995) RNA 1, 807-814.
30. Gabriel, K., Schneider, J., and McClain, W. H. (1996) Science 271, 195-197.
31. Legualt, P., and Pardi, A. (1994) J. Am. Chem. Soc. 116, 8390-8391.
32. Legault, P., and Pardi, A. (1997) J. Am. Chem. Soc. 119, 6621-6628.
33. Doudna, J. A., Cormack, B. P., and Szostak, J. W. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 7402-7406.
34. Hou, Y.-M., and Schimmel, P. (1988) Nature 333, 140-145.
35. McClain, W. H., Chen, Y.-M., Foss, K., and Schneider, J. (1988) Science 242, 1681-1684.
36. Ramos, A., and Varani, G. (1997) Nucleic Acids Res. 25, 2083-2090.
37. Lee, K., Varma, S., SantaLucia, J. J., and Cunningham, P. R. (1997) J. Mol. Biol. 269, 732-743.
38. Boulard, Y., Cognet, J. A., Gabarro-Arpa, J., Le Bret, M., Carbonnaux, C., and Fazakerley, G. V. (1995) J. Mol. Biol. 246, 194-208.
39. Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S.-H., Srinivasan, A. R., and Schneider, B. (1992) Biophys. J. 63, 751-759.