-
1
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
DOI 10.1021/ar000033j
-
Kollman, P. A.; Massova, I.; Reyes, C.; Kuhn, B.; Huo, S.; Chong, L.; Lee, M.; Lee, T.; Duan, Y.; Wang, W.; Donini, O.; Cieplak, P.; Srinivasan, J.; Case, D. A.; Cheatham, T. E., III Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models Acc. Chem. Res. 2000, 33, 889-897 (Pubitemid 32056774)
-
(2000)
Accounts of Chemical Research
, vol.33
, Issue.12
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
-
2
-
-
0031058541
-
The statistical-thermodynamic basis for computation of binding affinities: A critical review
-
Gilson, M. K.; Given, J. A.; Bush, B. L.; McCammon, J. A. The statistical-thermodynamic basis for computation of binding affinities: A critical review Biophys. J. 1997, 72, 1047-1069 (Pubitemid 27113632)
-
(1997)
Biophysical Journal
, vol.72
, Issue.3
, pp. 1047-1069
-
-
Gilson, M.K.1
Given, J.A.2
Bush, B.L.3
McCammon, J.A.4
-
3
-
-
33748637571
-
Recent advances in free energy calculations with a combination of molecular mechanics and continuum models
-
DOI 10.2174/157340906778226454
-
Wang, J. M.; Hou, T. J.; Xu, X. J. Recent Advances in Free Energy Calculations with a Combination of Molecular Mechanics and Continuum Models Curr. Comput.-Aided Drug Des. 2006, 2, 287-306 (Pubitemid 44383230)
-
(2006)
Current Computer-Aided Drug Design
, vol.2
, Issue.3
, pp. 287-306
-
-
Wang, J.M.1
Hou, T.2
Xu, X.3
-
4
-
-
0009590921
-
Free-Energy Calculations - A breakthrough for modeling organic-chemistry in solution
-
Jorgensen, W. L. Free-Energy Calculations-A breakthrough for modeling organic-chemistry in solution Acc. Chem. Res. 1989, 22, 184-189
-
(1989)
Acc. Chem. Res.
, vol.22
, pp. 184-189
-
-
Jorgensen, W.L.1
-
5
-
-
0024578173
-
Free-energy via molecular simulation - Applications to chemical and biomolecular systems
-
Beveridge, D. L.; Dicapua, F. M. Free-energy via molecular simulation-applications to chemical and biomolecular systems Annu. Rev. Biophys. Biophys. Chem. 1989, 18, 431-492
-
(1989)
Annu. Rev. Biophys. Biophys. Chem.
, vol.18
, pp. 431-492
-
-
Beveridge, D.L.1
Dicapua, F.M.2
-
6
-
-
34147133371
-
Recent developments in methodologies for calculating the entropy and free energy of biological systems by computer simulation
-
DOI 10.1016/j.sbi.2007.03.016, PII S0959440X07000462, Theory and Simulation / Mecromolecular Assemblages
-
Meirovitch, H. Recent developments in methodologies for calculating the entropy and free energy of biological systems by computer simulation Curr. Opin. Struct. Biol. 2007, 17, 181-186 (Pubitemid 46575261)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.2
, pp. 181-186
-
-
Meirovitch, H.1
-
7
-
-
0141682863
-
Absolute binding free energies: A quantitative approach for their calculation
-
Boresch, S.; Tettinger, F.; Leitgeb, M.; Karplus, M. Absolute binding free energies: A quantitative approach for their calculation J. Phys. Chem. B 2003, 107, 9535-9551
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 9535-9551
-
-
Boresch, S.1
Tettinger, F.2
Leitgeb, M.3
Karplus, M.4
-
8
-
-
0034084991
-
Combined molecular mechanical and continuum solvent approach (MM- PBSA/GBSA) to predict ligand binding
-
DOI 10.1023/A:1008763014207
-
Massova, I.; Kollman, P. A. Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding Perspect. Drug Discov. Des. 2000, 18, 113-135 (Pubitemid 30191024)
-
(2000)
Perspectives in Drug Discovery and Design
, vol.18
, pp. 113-135
-
-
Massova, I.1
Kollman, P.A.2
-
9
-
-
0347949637
-
Revisiting Free Energy Calculations: A Theoretical Connection to MM/PBSA and Direct Calculation of the Association Free Energy
-
Swanson, J. M. J.; Henchman, R. H.; McCammon, J. A. Revisiting free energy calculations: A theoretical connection to MM/PBSA and direct calculation of the association free energy Biophys. J. 2004, 86, 67-74 (Pubitemid 38067436)
-
(2004)
Biophysical Journal
, vol.86
, Issue.1
, pp. 67-74
-
-
Swanson, J.M.J.1
Henchman, R.H.2
McCammon, J.A.3
-
10
-
-
0032560959
-
Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate-DNA helices
-
DOI 10.1021/ja981844+
-
Srinivasan, J.; Cheatham, T. E.; Cieplak, P.; Kollman, P. A.; Case, D. A. Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate-DNA helices J. Am. Chem. Soc. 1998, 120, 9401-9409 (Pubitemid 28452628)
-
(1998)
Journal of the American Chemical Society
, vol.120
, Issue.37
, pp. 9401-9409
-
-
Srinivasan, J.1
Cheatham III, T.E.2
Cieplak, P.3
Kollman, P.A.4
Case, D.A.5
-
11
-
-
0035914481
-
Molecular Dynamics in the Endgame of Protein Structure Prediction
-
DOI 10.1006/jmbi.2001.5032, PII S0022283601950326
-
Lee, M. R.; Tsai, J.; Baker, D.; Kollman, P. A. Molecular dynamics in the endgame of protein structure prediction J. Mol. Biol. 2001, 313, 417-430 (Pubitemid 33587197)
-
(2001)
Journal of Molecular Biology
, vol.313
, Issue.2
, pp. 417-430
-
-
Lee, M.R.1
Tsai, J.2
Baker, D.3
Kollman, P.A.4
-
12
-
-
0037187412
-
Molecular dynamics and free energy analyses of cathepsin D-inhibitor interactions: Insight into structure-based ligand design
-
DOI 10.1021/jm010338j
-
Huo, S. H.; Wang, J. M.; Cieplak, P.; Kollman, P. A.; Kuntz, I. D. Molecular dynamics and free energy analyses of cathepsin D-inhibitor interactions: Insight into structure-based ligand design J. Med. Chem. 2002, 45, 1412-1419 (Pubitemid 34246104)
-
(2002)
Journal of Medicinal Chemistry
, vol.45
, Issue.7
, pp. 1412-1419
-
-
Huo, S.1
Wang, J.2
Cieplak, P.3
Kollman, P.A.4
Kuntz, I.D.5
-
13
-
-
0034789590
-
An analysis of the interactions between the Sem-5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis
-
DOI 10.1021/ja003164o
-
Wang, W.; Lim, W. A.; Jakalian, A.; Wang, J.; Wang, J. M.; Luo, R.; Bayly, C. T.; Kollman, P. A. An analysis of the interactions between the Sem-5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis J. Am. Chem. Soc. 2001, 123, 3986-3994 (Pubitemid 32899485)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.17
, pp. 3986-3994
-
-
Wang, W.1
Lim, W.A.2
Jakalian, A.3
Wang, J.4
Wang, J.5
Luo, R.6
Bayly, C.I.7
Kollman, P.A.8
-
14
-
-
0034811498
-
Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA
-
DOI 10.1021/ja003834q
-
Wang, J. M.; Morin, P.; Wang, W.; Kollman, P. A. Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA J. Am. Chem. Soc. 2001, 123, 5221-5230 (Pubitemid 32910665)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.22
, pp. 5221-5230
-
-
Wang, J.1
Morin, P.2
Wang, W.3
Kollman, P.A.4
-
15
-
-
0034979318
-
Biomolecular simulations: Recent developments in force fields, simulations of enzyme catalysis, protein-ligand, protein-protein, and protein-nucleic acid noncovalent interactions
-
DOI 10.1146/annurev.biophys.30.1.211
-
Wang, W.; Donini, O.; Reyes, C. M.; Kollman, P. A. Biomolecular simulations: Recent developments in force fields, simulations of enzyme catalysis, protein-ligand, protein-protein, and protein-nucleic acid noncovalent interactions Annu. Rev. Biophys. Biomol. Struct. 2001, 30, 211-243 (Pubitemid 32566163)
-
(2001)
Annual Review of Biophysics and Biomolecular Structure
, vol.30
, pp. 211-243
-
-
Wang, W.1
Donini, O.2
Reyes, C.M.3
Kollman, P.A.4
-
16
-
-
17144414125
-
Hierarchical database screenings for HIV-1 reverse transcriptase using a pharmacophore model, rigid docking, solvation docking, and MM-PB/SA
-
DOI 10.1021/jm049606e
-
Wang, J. M.; Kang, X. S.; Kuntz, I. D.; Kollman, P. A. Hierarchical database screenings for HIV-1 reverse transcriptase using a pharmacophore model, rigid docking, solvation docking, and MM-PB/SA J. Med. Chem. 2005, 48, 2432-2444 (Pubitemid 40516435)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.7
, pp. 2432-2444
-
-
Wang, J.1
Kang, X.2
Kuntz, I.D.3
Kollman, P.A.4
-
17
-
-
20444377245
-
Validation and use of the MM-PBSA approach for drug discovery
-
DOI 10.1021/jm049081q
-
Kuhn, B.; Gerber, P.; Schulz-Gasch, T.; Stahl, M. Validation and use of the MM-PBSA approach for drug discovery J. Med. Chem. 2005, 48, 4040-4048 (Pubitemid 40800612)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.12
, pp. 4040-4048
-
-
Kuhn, B.1
Gerber, P.2
Schulz-Gasch, T.3
Stahl, M.4
-
18
-
-
79955724197
-
Virtual screening using molecular simulations
-
Yang, T. Y.; Wu, J. C.; Yan, C. L.; Wang, Y. F.; Luo, R.; Gonzales, M. B.; Dalby, K. N.; Ren, P. Y. Virtual screening using molecular simulations Proteins 2011, 79, 1940-1951
-
(2011)
Proteins
, vol.79
, pp. 1940-1951
-
-
Yang, T.Y.1
Wu, J.C.2
Yan, C.L.3
Wang, Y.F.4
Luo, R.5
Gonzales, M.B.6
Dalby, K.N.7
Ren, P.Y.8
-
19
-
-
79952588669
-
Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The accuracy of binding free energy calculations based on molecular dynamics simulations
-
Hou, T.; Wang, J.; Li, Y.; Wang, W. Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The accuracy of binding free energy calculations based on molecular dynamics simulations J. Chem. Info. Model 2011, 51, 69-82
-
(2011)
J. Chem. Info. Model
, vol.51
, pp. 69-82
-
-
Hou, T.1
Wang, J.2
Li, Y.3
Wang, W.4
-
20
-
-
79951996670
-
Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking
-
Hou, T.; Wang, J.; Li, Y.; Wang, W. Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking J. Comput. Chem. 2011, 32, 866-877
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 866-877
-
-
Hou, T.1
Wang, J.2
Li, Y.3
Wang, W.4
-
21
-
-
33750467966
-
Ligand affinities predicted with the MM/PBSA method: Dependence on the simulation method and the force field
-
DOI 10.1021/jm0608210
-
Weis, A.; Katebzadeh, K.; Soderhjelm, P.; Nilsson, I.; Ryde, U. Ligand affinities predicted with the MM/PBSA method: Dependence on the simulation method and the force field J. Med. Chem. 2006, 49, 6596-6606 (Pubitemid 44657454)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.22
, pp. 6596-6606
-
-
Weis, A.1
Katebzadeh, K.2
Soderhjelm, P.3
Nilsson, I.4
Ryde, U.5
-
22
-
-
64049102289
-
Binding of small-molecule ligands to proteins: What you see is not always what you get
-
Mobley, D. L.; Dill, K. A. Binding of small-molecule ligands to proteins: what you see is not always what you get Structure 2009, 17, 489-498
-
(2009)
Structure
, vol.17
, pp. 489-498
-
-
Mobley, D.L.1
Dill, K.A.2
-
24
-
-
25844431698
-
Coarse-grained normal mode analysis in structural biology
-
DOI 10.1016/j.sbi.2005.08.007, PII S0959440X05001557, Carbohydrates and Glycoconjugates/Biophysical Methods
-
Bahar, I.; Rader, A. J. Coarse-grained normal mode analysis in structural biology Curr. Opin. Struct. Biol. 2005, 15, 586-592 (Pubitemid 41393491)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.5
, pp. 586-592
-
-
Bahar, I.1
Rader, A.J.2
-
25
-
-
34547666968
-
How well can we understand large-scale protein motions using normal modes of elastic network models?
-
DOI 10.1529/biophysj.106.095927
-
Yang, L.; Song, G.; Jernigan, R. L. How well can we understand large-scale protein motions using normal modes of elastic network models? Biophys. J. 2007, 93, 920-929 (Pubitemid 47219784)
-
(2007)
Biophysical Journal
, vol.93
, Issue.3
, pp. 920-929
-
-
Yang, L.1
Song, G.2
Jernigan, R.L.3
-
26
-
-
58149327312
-
An improved method to predict the entropy term with the MM/PBSA approach
-
Kongsted, J.; Ryde, U. An improved method to predict the entropy term with the MM/PBSA approach J. Comput.-Aided Mol. Des. 2009, 23, 63-71
-
(2009)
J. Comput.-Aided Mol. Des.
, vol.23
, pp. 63-71
-
-
Kongsted, J.1
Ryde, U.2
-
27
-
-
80051775090
-
Accurate predictions of nonpolar solvation free energies require explicit consideration of binding-site hydration
-
Genheden, S.; Mikulskis, P.; Hu, L. H.; Kongsted, J.; Soderhjelm, P.; Ryde, U. Accurate predictions of nonpolar solvation free energies require explicit consideration of binding-site hydration J. Am. Chem. Soc. 2011, 133, 13081-13092
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 13081-13092
-
-
Genheden, S.1
Mikulskis, P.2
Hu, L.H.3
Kongsted, J.4
Soderhjelm, P.5
Ryde, U.6
-
28
-
-
46449096350
-
Efficient calculation of configurational entropy from molecular simulations by combining the mutual-information expansion and nearest-neighbor methods
-
Hnizdo, V.; Tan, J.; Killian, B. J.; Gilson, M. K. Efficient calculation of configurational entropy from molecular simulations by combining the mutual-information expansion and nearest-neighbor methods J. Comput. Chem. 2008, 29, 1605-1614
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1605-1614
-
-
Hnizdo, V.1
Tan, J.2
Killian, B.J.3
Gilson, M.K.4
-
29
-
-
0242585455
-
Configurational entropy and cooperativity between ligand binding and dimerization in glycopeptide antibiotics
-
DOI 10.1021/ja027780r
-
Jusuf, S.; Loll, P. J.; Axelsen, P. H. Configurational entropy and cooperativity between ligand binding and dimerization in glycopeptide antibiotics J. Am. Chem. Soc. 2003, 125, 3988-3994 (Pubitemid 36512391)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.13
, pp. 3988-3994
-
-
Jusuf, S.1
Loll, P.J.2
Axelsen, P.H.3
-
30
-
-
79960913321
-
Calculation of configurational entropy with a Boltzmann-Quasiharmonic model: The origin of high-affinity protein-ligand binding
-
Harpole, K. W.; Sharp, K. A. Calculation of configurational entropy with a Boltzmann-Quasiharmonic model: The origin of high-affinity protein-ligand binding J. Phys. Chem. B 2011, 115, 9461-9472
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 9461-9472
-
-
Harpole, K.W.1
Sharp, K.A.2
-
31
-
-
33846822002
-
Ligand configurational entropy and protein binding
-
DOI 10.1073/pnas.0610494104
-
Chang, C. E. A.; Chen, W.; Gilson, M. K. Ligand configurational entropy and protein binding Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 1534-1539 (Pubitemid 46214625)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.5
, pp. 1534-1539
-
-
Chang, C.-E.A.1
Chen, W.2
Gilson, M.K.3
-
32
-
-
0034658244
-
A study on the enthalpy-entropy compensation in protein unfolding
-
DOI 10.1016/S0301-4622(00)00130-7, PII S0301462200001307
-
Liu, L.; Yang, C.; Guo, Q. X. A study on the enthalpy-entropy compensation in protein unfolding Biophys. Chem. 2000, 84, 239-251 (Pubitemid 30254317)
-
(2000)
Biophysical Chemistry
, vol.84
, Issue.3
, pp. 239-251
-
-
Liu, L.1
Yang, C.2
Guo, Q.-X.3
-
33
-
-
6344223617
-
A flexible approach for understanding protein stability
-
DOI 10.1016/j.febslet.2004.09.057, PII S001457930401186X
-
Livesay, D. R.; Dallakyan, S.; Wood, G. G.; Jacobs, D. J. A flexible approach for understanding protein stability Febs Lett. 2004, 576, 468-476 (Pubitemid 39388647)
-
(2004)
FEBS Letters
, vol.576
, Issue.3
, pp. 468-476
-
-
Livesay, D.R.1
Dallakyan, S.2
Wood, G.G.3
Jacobs, D.J.4
-
34
-
-
38049123863
-
Evaluation of configurational entropy methods from peptide folding-unfolding simulation
-
Li, D. W.; Khanlarzadeh, M.; Wang, J. B.; Huo, S. H.; Brcuschweiler, R. Evaluation of configurational entropy methods from peptide folding-unfolding simulation J. Phys. Chem. B 2007, 111, 13807-13813
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 13807-13813
-
-
Li, D.W.1
Khanlarzadeh, M.2
Wang, J.B.3
Huo, S.H.4
Brcuschweiler, R.5
-
35
-
-
0028454828
-
The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure
-
Bohm, H. J. The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure J. Comput.-Aided Mol. Des. 1994, 8, 243-256
-
(1994)
J. Comput.-Aided Mol. Des.
, vol.8
, pp. 243-256
-
-
Bohm, H.J.1
-
36
-
-
0036022960
-
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
-
DOI 10.1023/A:1016357811882
-
Wang, R.; Lai, L.; Wang, S. Further development and validation of empirical scoring functions for structure-based binding affinity prediction J. Comput.-Aided Mol. Des. 2002, 16, 11-26 (Pubitemid 34855041)
-
(2002)
Journal of Computer-Aided Molecular Design
, vol.16
, Issue.1
, pp. 11-26
-
-
Wang, R.1
Lai, L.2
Wang, S.3
-
37
-
-
0030599010
-
A fast flexible docking method using an incremental construction algorithm
-
DOI 10.1006/jmbi.1996.0477
-
Rarey, M.; Kramer, B.; Lengauer, T.; Klebe, G. A fast flexible docking method using an incremental construction algorithm J. Mol. Biol. 1996, 261, 470-489 (Pubitemid 26335901)
-
(1996)
Journal of Molecular Biology
, vol.261
, Issue.3
, pp. 470-489
-
-
Rarey, M.1
Kramer, B.2
Lengauer, T.3
Klebe, G.4
-
38
-
-
0031226772
-
Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
-
Eldridge, M. D.; Murray, C. W.; Auton, T. R.; Paolini, G. V.; Mee, R. P. Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes J. Comput.-Aided Mol. Des. 1997, 11, 425-445 (Pubitemid 127505895)
-
(1997)
Journal of Computer-Aided Molecular Design
, vol.11
, Issue.5
, pp. 425-445
-
-
Eldridge, M.D.1
Murray, C.W.2
Auton, T.R.3
Paolini, G.V.4
Mee, R.P.5
-
39
-
-
2942704292
-
Novel scoring functions comprising QXP, SASA, and protein side-chain entropy terms
-
Giordanetto, F.; Cotesta, S.; Catana, C.; Trosset, J. Y.; Vulpetti, A.; Stouten, P. F.; Kroemer, R. T. Novel scoring functions comprising QXP, SASA, and protein side-chain entropy terms J. Chem. Inf. Comput. Sci. 2004, 44, 882-893
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 882-893
-
-
Giordanetto, F.1
Cotesta, S.2
Catana, C.3
Trosset, J.Y.4
Vulpetti, A.5
Stouten, P.F.6
Kroemer, R.T.7
-
40
-
-
5644287368
-
Free energy, entropy, and induced fit in host-guest recognition: Calculations with the second-generation mining minima algorithm
-
Chang, C. E.; Gilson, M. K. Free energy, entropy, and induced fit in host-guest recognition: calculations with the second-generation mining minima algorithm J. Am. Chem. Soc. 2004, 126, 13156-13164 (Pubitemid 39372346)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.40
, pp. 13156-13164
-
-
Chang, C.-E.1
Gilson, M.K.2
-
41
-
-
16344395749
-
Calculation of cyclodextrin binding affinities: Energy, entropy, and implications for drug design
-
DOI 10.1529/biophysj.104.049494
-
Chen, W.; Chang, C. E.; Gilson, M. K. Calculation of cyclodextrin binding affinities: energy, entropy, and implications for drug design Biophys. J. 2004, 87, 3035-3049 (Pubitemid 40468563)
-
(2004)
Biophysical Journal
, vol.87
, Issue.5
, pp. 3035-3049
-
-
Chen, W.1
Chang, C.-E.2
Gilson, M.K.3
-
42
-
-
0027955787
-
Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins
-
DOI 10.1006/jmbi.1994.1052
-
Abagyan, R.; Totrov, M. Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins J. Mol. Biol. 1994, 235, 983-1002 (Pubitemid 24047836)
-
(1994)
Journal of Molecular Biology
, vol.235
, Issue.3
, pp. 983-1002
-
-
Abagyan, R.1
Totrov, M.2
-
43
-
-
0000127140
-
Method for estimating the configurational entropy of macromolecules
-
Karplus, M.; Kushick, J. N. Method for estimating the configurational entropy of macromolecules Macromolecules 1981, 14, 325-332
-
(1981)
Macromolecules
, vol.14
, pp. 325-332
-
-
Karplus, M.1
Kushick, J.N.2
-
44
-
-
0242411477
-
Tork: Conformational analysis method for molecules and complexes
-
Chang, C. E.; Gilson, M. K. Tork: Conformational analysis method for molecules and complexes J. Comput. Chem. 2003, 24, 1987-1998
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1987-1998
-
-
Chang, C.E.1
Gilson, M.K.2
-
45
-
-
33646062293
-
Concepts in receptor optimization: Targeting the RGD peptide
-
Chen, W.; Chang, C. E.; Gilson, M. K. Concepts in receptor optimization: targeting the RGD peptide J. Am. Chem. Soc. 2006, 128, 4675-4684
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 4675-4684
-
-
Chen, W.1
Chang, C.E.2
Gilson, M.K.3
-
46
-
-
0037473066
-
Calculation of molecular configuration integrals
-
Chang, C. E.; Potter, M. J.; Gilson, M. K. Calculation of molecular configuration integrals J. Phys. Chem. B 2003, 107, 1048-1055
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 1048-1055
-
-
Chang, C.E.1
Potter, M.J.2
Gilson, M.K.3
-
47
-
-
1542531903
-
Estimating entropies from molecular dynamics simulations
-
Peter, C.; Oostenbrink, C.; van Dorp, A.; van Gunsteren, W. F. Estimating entropies from molecular dynamics simulations J. Chem. Phys. 2004, 120, 2652-2661
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 2652-2661
-
-
Peter, C.1
Oostenbrink, C.2
Van Dorp, A.3
Van Gunsteren, W.F.4
-
48
-
-
34547227692
-
Extraction of configurational entropy from molecular simulations via an expansion approximation
-
Killian, B. J.; Kravitz, J. Y.; Gilson, M. K. Extraction of configurational entropy from molecular simulations via an expansion approximation J. Chem. Phys. 2007, 127, 024107
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 024107
-
-
Killian, B.J.1
Kravitz, J.Y.2
Gilson, M.K.3
-
49
-
-
33847642496
-
Nearest-neighbor nonparametric method for estimating the configurational entropy of complex molecules
-
DOI 10.1002/jcc.20589
-
Hnizdo, V.; Darian, E.; Fedorowicz, A.; Demchuk, E.; Li, S.; Singh, H. Nearest-neighbor nonparametric method for estimating the configurational entropy of complex molecules J. Comput. Chem. 2007, 28, 655-668 (Pubitemid 46353601)
-
(2007)
Journal of Computational Chemistry
, vol.28
, Issue.3
, pp. 655-668
-
-
Hnizdo, V.1
Darian, E.V.A.2
Fedorowicz, A.3
Demchuk, E.4
Li, S.5
Singh, H.6
-
50
-
-
33746099689
-
Calculation of the entropy and free energy of peptides by molecular dynamics simulations using the hypothetical scanning molecular dynamics method
-
Cheluvaraja, S.; Meirovitch, H. Calculation of the entropy and free energy of peptides by molecular dynamics simulations using the hypothetical scanning molecular dynamics method J. Chem. Phys. 2006, 125, 24905
-
(2006)
J. Chem. Phys.
, vol.125
, pp. 24905
-
-
Cheluvaraja, S.1
Meirovitch, H.2
-
51
-
-
76649103043
-
Methods for calculating the absolute entropy and free energy of biological systems based on ideas from polymer physics
-
Meirovitch, H. Methods for calculating the absolute entropy and free energy of biological systems based on ideas from polymer physics J. Mol. Recognit. 2010, 23, 153-172
-
(2010)
J. Mol. Recognit.
, vol.23
, pp. 153-172
-
-
Meirovitch, H.1
-
52
-
-
68949141761
-
Adaptive anisotropic kernels for nonparametric estimation of absolute configurational entropies in high-dimensional configuration spaces
-
Hensen, U.; Grubmuller, H.; Lange, O. F. Adaptive anisotropic kernels for nonparametric estimation of absolute configurational entropies in high-dimensional configuration spaces Phys. Rev. E 2009, 80, 011913
-
(2009)
Phys. Rev. e
, vol.80
, pp. 011913
-
-
Hensen, U.1
Grubmuller, H.2
Lange, O.F.3
-
53
-
-
77949608591
-
Estimating absolute configurational entropies of macromolecules: The minimally coupled subspace approach
-
Hensen, U.; Lange, O. F.; Grubmuller, H. Estimating absolute configurational entropies of macromolecules: the minimally coupled subspace approach PloS one 2010, 5, e9179
-
(2010)
PloS One
, vol.5
, pp. 9179
-
-
Hensen, U.1
Lange, O.F.2
Grubmuller, H.3
-
54
-
-
79251640898
-
Ligand Entropy in Gas-Phase, Upon Solvation and Protein Complexation. Fast Estimation with Quasi-Newton Hessian
-
Wlodek, S.; Skillman, A. G.; Nicholls, A. Ligand Entropy in Gas-Phase, Upon Solvation and Protein Complexation. Fast Estimation with Quasi-Newton Hessian J. Chem. Theory Comput. 2010, 6, 2140-2152
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 2140-2152
-
-
Wlodek, S.1
Skillman, A.G.2
Nicholls, A.3
-
55
-
-
65249097797
-
Aqueous solubility prediction based on weighted atom type counts and solvent accessible surface areas
-
Wang, J.; Hou, T.; Xu, X. Aqueous solubility prediction based on weighted atom type counts and solvent accessible surface areas J. Chem. Inf. Model. 2009, 49, 571-581
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 571-581
-
-
Wang, J.1
Hou, T.2
Xu, X.3
-
56
-
-
34547702167
-
Development of reliable aqueous solubility models and their application in druglike analysis
-
DOI 10.1021/ci700096r
-
Wang, J. M.; Krudy, G.; Hou, T. J.; Zhang, W.; Holland, G.; Xu, X. J. Development of reliable aqueous solubility models and their application in druglike analysis J. Chem. Inf. Model. 2007, 47, 1395-1404 (Pubitemid 47210043)
-
(2007)
Journal of Chemical Information and Modeling
, vol.47
, Issue.4
, pp. 1395-1404
-
-
Wang, J.1
Krudy, G.2
Hou, T.3
Zhang, W.4
Holland, G.5
Xu, X.6
-
57
-
-
0030040323
-
Reduced surface: An efficient way to compute molecular surfaces
-
Sanner, M. F.; Olson, A. J.; Spehner, J. C. Reduced surface: An efficient way to compute molecular surfaces Biopolymers 1996, 38, 305-320
-
(1996)
Biopolymers
, vol.38
, pp. 305-320
-
-
Sanner, M.F.1
Olson, A.J.2
Spehner, J.C.3
-
59
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank Nucleic Acids Res. 2000, 28, 235-242 (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
60
-
-
14044276310
-
Principles of carbopeptoid folding: A molecular dynamics simulation study
-
DOI 10.1002/psc.597
-
Baron, R.; Bakowies, D.; van Gunsteren, W. F. Principles of carbopeptoid folding: a molecular dynamics simulation study J. Pept. Sci. 2005, 11, 74-84 (Pubitemid 40277952)
-
(2005)
Journal of Peptide Science
, vol.11
, Issue.2
, pp. 74-84
-
-
Baron, R.1
Bakowies, D.2
Van Gunsteren, W.F.3
-
61
-
-
0011083273
-
Harmonic vibrational frequencies: An evaluation of Hartree-Fock, Møller-Plesset, quadratic configuration interaction, density functional theory, and semiempirical scale factors
-
Scott, A. P.; Radom, L. Harmonic vibrational frequencies: An evaluation of Hartree-Fock, Moller-Plesset, quadratic configuration interaction, density functional theory, and semiempirical scale factors J. Phys. Chem. 1996, 100, 16502-16513 (Pubitemid 126787989)
-
(1996)
Journal of Physical Chemistry
, vol.100
, Issue.41
, pp. 16502-16513
-
-
Scott, A.P.1
Radom, L.2
-
62
-
-
0038626673
-
-
Gaussian, Inc, Wallingford, CT
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J., J. A.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Gaussian 03, Gaussian, Inc, Wallingford, CT, 2004.
-
(2004)
Gaussian 03
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery, J..J.A.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
Millam, J.M.11
Iyengar, S.S.12
Tomasi, J.13
Barone, V.14
Mennucci, B.15
Cossi, M.16
Scalmani, G.17
Rega, N.18
Petersson, G.A.19
Nakatsuji, H.20
Hada, M.21
Ehara, M.22
Toyota, K.23
Fukuda, R.24
Hasegawa, J.25
Ishida, M.26
Nakajima, T.27
Honda, Y.28
Kitao, O.29
Nakai, H.30
Klene, M.31
Li, X.32
Knox, J.E.33
Hratchian, H.P.34
Cross, J.B.35
Bakken, V.36
Adamo, C.37
Jaramillo, J.38
Gomperts, R.39
Stratmann, R.E.40
Yazyev, O.41
Austin, A.J.42
Cammi, R.43
Pomelli, C.44
Ochterski, J.W.45
Ayala, P.Y.46
Morokuma, K.47
Voth, G.A.48
Salvador, P.49
Dannenberg, J.J.50
Zakrzewski, V.G.51
Dapprich, S.52
Daniels, A.D.53
Strain, M.C.54
Farkas, O.55
Malick, D.K.56
Rabuck, A.D.57
Raghavachari, K.58
Foresman, J.B.59
Ortiz, J.V.60
Cui, Q.61
Baboul, A.G.62
Clifford, S.63
Cioslowski, J.64
Stefanov, B.B.65
Liu, G.66
Liashenko, A.67
Piskorz, P.68
Komaromi, I.69
Martin, R.L.70
Fox, D.J.71
Keith, T.72
Al-Laham, M.A.73
Peng, C.Y.74
Nanayakkara, A.75
Challacombe, M.76
Gill, P.M.W.77
Johnson, B.78
Chen, W.79
Wong, M.W.80
Gonzalez, C.81
Pople, J.A.82
more..
-
63
-
-
84986468608
-
An Approach to Computing Electrostatic Charges for Molecules
-
Singh, U. C.; Kollman, P. A. An Approach to Computing Electrostatic Charges for Molecules J. Comput. Chem. 1984, 5, 129-145
-
(1984)
J. Comput. Chem.
, vol.5
, pp. 129-145
-
-
Singh, U.C.1
Kollman, P.A.2
-
64
-
-
3042524904
-
A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges - The RESP model
-
Bayly, C. I.; Cieplak, P.; Cornell, W. D.; Kollman, P. A. A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges- the RESP model J. Phys. Chem. 1993, 97, 10269-10280
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 10269-10280
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
65
-
-
83455170264
-
-
University of California, San Francisco, CA
-
Case, D. A.; Darden, T. A.; Cheatham, I., T. E.; Simmerling, C.; Wang, J.; Duke, R. E.; Luo, R.; Walker, R. C.; Zhang, W.; Merz, K. M.; Roberts, B.; Wang, B.; Hayik, S.; Roitberg, A.; Seabra, G.; Kolossvary, I.; Wong, K. F.; Paesani, F.; Vanicek, J.; Liu, J.; Wu, X.; Brozell, S. R.; Steinbrecher, T.; Gohlke, H.; Cai, Q.; Ye, X.; Wang, J.; Hsieh, M. J.; Cui, G.; Roe, D. R.; Mathews, D. H.; Seetin, M. G.; Sagui, C.; Babin, V.; Luchko, T.; Gusarov, S.; Kovalenko, A.; Kollman, P. A. AMBER11; University of California, San Francisco, CA, 2010.
-
(2010)
AMBER11
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, I..T.E.3
Simmerling, C.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
Roberts, B.11
Wang, B.12
Hayik, S.13
Roitberg, A.14
Seabra, G.15
Kolossvary, I.16
Wong, K.F.17
Paesani, F.18
Vanicek, J.19
Liu, J.20
Wu, X.21
Brozell, S.R.22
Steinbrecher, T.23
Gohlke, H.24
Cai, Q.25
Ye, X.26
Wang, J.27
Hsieh, M.J.28
Cui, G.29
Roe, D.R.30
Mathews, D.H.31
Seetin, M.G.32
Sagui, C.33
Babin, V.34
Luchko, T.35
Gusarov, S.36
Kovalenko, A.37
Kollman, P.A.38
more..
-
66
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J.; Cieplak, P.; Kollman, P. A. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 2000, 21, 1049-1074
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
67
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.; Simmerling, C. Comparison of multiple Amber force fields and development of improved protein backbone parameters Proteins 2006, 65, 712-725 (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
68
-
-
2942532422
-
Development and testing of a general amber force field
-
Wang, J.; Wolf, R. M.; Caldwell, J. W.; Kollman, P. A.; Case, D. A. Development and testing of a general amber force field J. Comput. Chem. 2004, 25, 1157-1174
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
69
-
-
33748538349
-
Automatic atom type and bond type perception in molecular mechanical calculations
-
DOI 10.1016/j.jmgm.2005.12.005, PII S1093326305001737
-
Wang, J. M.; Wang, W.; Kollman, P. A.; Case, D. A. Automatic atom type and bond type perception in molecular mechanical calculations J. Mol. Graph. Modell. 2006, 25, 247-260 (Pubitemid 44363172)
-
(2006)
Journal of Molecular Graphics and Modelling
, vol.25
, Issue.2
, pp. 247-260
-
-
Wang, J.1
Wang, W.2
Kollman, P.A.3
Case, D.A.4
-
70
-
-
0033104039
-
New tricks for modelers from the crystallography toolkit: The particle mesh Ewald algorithm and its use in nucleic acid simulations
-
Darden, T.; Perera, L.; Li, L.; Pedersen, L. New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations Structure 1999, 7, R55-60
-
(1999)
Structure
, vol.7
, pp. 55-60
-
-
Darden, T.1
Perera, L.2
Li, L.3
Pedersen, L.4
-
71
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. A smooth particle mesh Ewald method J. Chem. Phys. 1995, 103, 8577-8593
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
72
-
-
0942288583
-
Towards an accurate representation of electrostatics in classical force fields: Efficient implementation of multipolar interactions in biomolecular simulations
-
Sagui, C.; Pedersen, L. G.; Darden, T. A. Towards an accurate representation of electrostatics in classical force fields: Efficient implementation of multipolar interactions in biomolecular simulations J. Chem. Phys. 2004, 120, 73-87
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 73-87
-
-
Sagui, C.1
Pedersen, L.G.2
Darden, T.A.3
-
73
-
-
84986440341
-
Settle - An analytical version of the Shake and Rattle algorithm for rigid water models
-
Miyamoto, S.; Kollman, P. A. Settle-an analytical version of the Shake and Rattle algorithm for rigid water models J. Comput. Chem. 1992, 13, 952-962
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
74
-
-
2342504649
-
Synchronization of trajectories in canonical molecular-dynamics simulations: Observation, explanation, and exploitation
-
Uberuaga, B. P.; Anghel, M.; Voter, A. F. Synchronization of trajectories in canonical molecular-dynamics simulations: observation, explanation, and exploitation J. Chem. Phys. 2004, 120, 6363-6374
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 6363-6374
-
-
Uberuaga, B.P.1
Anghel, M.2
Voter, A.F.3
-
75
-
-
0034817509
-
Langevin stabilization of molecular dynamics
-
DOI 10.1063/1.1332996
-
Izaguirre, J. A.; Catarello, D. P.; Wozniak, J. M.; Skeel, R. D. Langevin stabilization of molecular dynamics J. Chem. Phys. 2001, 114, 2090-2098 (Pubitemid 32873171)
-
(2001)
Journal of Chemical Physics
, vol.114
, Issue.5
, pp. 2090-2098
-
-
Lzaguirre, J.A.1
Catarello, D.P.2
Wozniak, J.M.3
Skeel, R.D.4
-
76
-
-
33947317580
-
Langevin stabilization of molecular-dynamics simulations of polymers by means of quasisymplectic algorithms
-
Larini, L.; Mannella, R.; Leporini, D. Langevin stabilization of molecular-dynamics simulations of polymers by means of quasisymplectic algorithms J. Chem. Phys. 2007, 126, 104101
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 104101
-
-
Larini, L.1
Mannella, R.2
Leporini, D.3
-
77
-
-
0026869597
-
Langevin dynamics of peptides - The frictional dependence of Isomerization rates of N-acetylalanyl-N'-methylamide
-
Loncharich, R. J.; Brooks, B. R.; Pastor, R. W. Langevin dynamics of peptides-the frictional dependence of Isomerization rates of N-acetylalanyl-N'-methylamide Biopolymers 1992, 32, 523-535
-
(1992)
Biopolymers
, vol.32
, pp. 523-535
-
-
Loncharich, R.J.1
Brooks, B.R.2
Pastor, R.W.3
-
78
-
-
33748390341
-
Parametrized models of aqueous free energies of solvation based on pairwise descreening of solute atomic charges from a dielectric medium
-
Hawkins, G. D.; Cramer, C. J.; Truhlar, D. G. Parametrized models of aqueous free energies of solvation based on pairwise descreening of solute atomic charges from a dielectric medium J. Phys. Chem. 1996, 100, 19824-19839 (Pubitemid 126786901)
-
(1996)
Journal of Physical Chemistry
, vol.100
, Issue.51
, pp. 19824-19839
-
-
Hawkins, G.D.1
Cramer, C.J.2
Truhlar, D.G.3
-
79
-
-
0032530336
-
Structural basis of inhibitor selectivity in MAP kinases
-
Wang, Z. L.; Canagarajah, B. J.; Boehm, J. C.; Kassisa, S.; Cobb, M. H.; Young, P. R.; Abdel-Meguid, S.; Adams, J. L.; Goldsmith, E. J. Structural basis of inhibitor selectivity in MAP kinases Struct. Fold. Des. 1998, 6, 1117-1128 (Pubitemid 28434115)
-
(1998)
Structure
, vol.6
, Issue.9
, pp. 1117-1128
-
-
Wang, Z.1
Canagarajah, B.J.2
Boehm, J.C.3
Kassisa, S.4
Cobb, M.H.5
Young, P.R.6
Abdel-Meguid, S.7
Adams, J.L.8
Goldsmith, E.J.9
-
80
-
-
0028846226
-
Crystal-structure of HIV-1 protease in complex with VX-478, a potent and orally bioavailable inhibitor of the enzyme
-
Kim, E. E.; Baker, C. T.; Dwyer, M. D.; Murcko, M. A.; Rao, B. G.; Tung, R. D.; Navia, M. A. Crystal-structure of HIV-1 protease in complex with VX-478, a potent and orally bioavailable inhibitor of the enzyme J. Am. Chem. Soc. 1995, 117, 1181-1182
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 1181-1182
-
-
Kim, E.E.1
Baker, C.T.2
Dwyer, M.D.3
Murcko, M.A.4
Rao, B.G.5
Tung, R.D.6
Navia, M.A.7
-
81
-
-
77953976984
-
An MM/3D-RISM Approach for Ligand Binding Affinities
-
Genheden, S.; Luchko, T.; Gusarov, S.; Kovalenko, A.; Ryde, U. An MM/3D-RISM Approach for Ligand Binding Affinities J. Phys. Chem. B 2010, 114, 8505-8516
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 8505-8516
-
-
Genheden, S.1
Luchko, T.2
Gusarov, S.3
Kovalenko, A.4
Ryde, U.5
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