-
1
-
-
70450194691
-
-
DeLorbe, J. E.; Clements, J. H.; Teresk, M. G.; Benfield, A. P.; Plake, H. R.; Millspaugh, L. E.; Martin, S. F. J. Am. Chem. Soc. 2009, 131, 16758
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 16758
-
-
Delorbe, J.E.1
Clements, J.H.2
Teresk, M.G.3
Benfield, A.P.4
Plake, H.R.5
Millspaugh, L.E.6
Martin, S.F.7
-
2
-
-
77955567116
-
-
Ward, J. M.; Gorenstein, N. M.; Tian, J.; Martin, S. F.; Post, C. B. J. Am. Chem. Soc. 2010, 132, 1058
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 1058
-
-
Ward, J.M.1
Gorenstein, N.M.2
Tian, J.3
Martin, S.F.4
Post, C.B.5
-
3
-
-
84906393702
-
-
Akke, M.; Bruschweiler, R.; Palmer, A. J. Am. Chem. Soc. 1993, 115, 9832
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 9832
-
-
Akke, M.1
Bruschweiler, R.2
Palmer, A.3
-
4
-
-
0031563812
-
-
Yang, D.; Mok, Y.; Forman-Kay, J.; Farrow, N.; Kay, L. J. Mol. Biol. 1997, 272, 790
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 790
-
-
Yang, D.1
Mok, Y.2
Forman-Kay, J.3
Farrow, N.4
Kay, L.5
-
5
-
-
0030473440
-
-
Li, Z.; Raychaudhuri, S.; Wand, A. J. Protein Sci. 1996, 5, 2647
-
(1996)
Protein Sci.
, vol.5
, pp. 2647
-
-
Li, Z.1
Raychaudhuri, S.2
Wand, A.J.3
-
6
-
-
0033988897
-
-
Lee, A. L.; Kinnear, S. A.; Wand, A. J. Nat. Struct. Biol. 2000, 7, 72
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 72
-
-
Lee, A.L.1
Kinnear, S.A.2
Wand, A.J.3
-
7
-
-
0037176906
-
-
Kranz, J. K.; Flynn, P. F.; Fuentes, E. J.; Wand, A. J. Biochemistry 2002, 41, 2599
-
(2002)
Biochemistry
, vol.41
, pp. 2599
-
-
Kranz, J.K.1
Flynn, P.F.2
Fuentes, E.J.3
Wand, A.J.4
-
8
-
-
77951281285
-
-
Marlow, M. S.; Dogan, J.; Frederick, K. K.; Valentine, K. G.; Wand, A. J. Nat. Chem. Biol. 2010, 6, 352
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 352
-
-
Marlow, M.S.1
Dogan, J.2
Frederick, K.K.3
Valentine, K.G.4
Wand, A.J.5
-
9
-
-
34447503697
-
-
Frederick, K. K.; Marlow, M. S.; Valentine, K. G.; Wand, A. J. Nature 2007, 448, 325
-
(2007)
Nature
, vol.448
, pp. 325
-
-
Frederick, K.K.1
Marlow, M.S.2
Valentine, K.G.3
Wand, A.J.4
-
10
-
-
0022666945
-
-
Lybrand, T.; McCammon, J. A.; Wipf, G. Proc. Natl. Acad. Sci. U. S. A. 1986, 83, 833
-
(1986)
Proc. Natl. Acad. Sci. U. S. A.
, vol.83
, pp. 833
-
-
Lybrand, T.1
McCammon, J.A.2
Wipf, G.3
-
12
-
-
0023346161
-
-
Bash, P.; Singh, U. C.; Langridge, R.; Kollman, P. Science 1987, 236, 564
-
(1987)
Science
, vol.236
, pp. 564
-
-
Bash, P.1
Singh, U.C.2
Langridge, R.3
Kollman, P.4
-
13
-
-
0023106632
-
-
Bash, P.; Singh, C.; Brown, F.; Langridge, R.; Kollman, P. Science 1987, 235, 574
-
(1987)
Science
, vol.235
, pp. 574
-
-
Bash, P.1
Singh, C.2
Brown, F.3
Langridge, R.4
Kollman, P.5
-
14
-
-
36549092795
-
-
Jorgensen, W. L.; Buckner, J. K.; Boudon, S.; Tirado-Rives, J. J. Chem. Phys. 1988, 89, 3742
-
(1988)
J. Chem. Phys.
, vol.89
, pp. 3742
-
-
Jorgensen, W.L.1
Buckner, J.K.2
Boudon, S.3
Tirado-Rives, J.4
-
15
-
-
0035950792
-
-
Zhou, R.; Friesner, R. A.; Ghosh, A.; Rizzo, R. C.; Jorgensen, W. L.; Levy, R. M. J. Phys. Chem. B 2001, 105, 10388
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 10388
-
-
Zhou, R.1
Friesner, R.A.2
Ghosh, A.3
Rizzo, R.C.4
Jorgensen, W.L.5
Levy, R.M.6
-
17
-
-
84906410607
-
-
Peter, C.; Oostenbrink, C.; van Dorp, C.; van Gunsteren, W. J. Chem. Phys. 2004, 120, 2651
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 2651
-
-
Peter, C.1
Oostenbrink, C.2
Van Dorp, C.3
Van Gunsteren, W.4
-
18
-
-
77956075440
-
-
Baron, R.; Setny, P.; McCammon, J. A. J. Am. Chem. Soc. 2010, 132, 12091
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 12091
-
-
Baron, R.1
Setny, P.2
McCammon, J.A.3
-
20
-
-
0029757992
-
-
Roux, B.; Nina, M.; Pomes, R.; Smith, J. C. Biophys. J. 1996, 71, 670
-
(1996)
Biophys. J.
, vol.71
, pp. 670
-
-
Roux, B.1
Nina, M.2
Pomes, R.3
Smith, J.C.4
-
22
-
-
33749532284
-
-
Wang, J.; Deng, Y.; Roux, B. Biophys. J. 2006, 91, 2798
-
(2006)
Biophys. J.
, vol.91
, pp. 2798
-
-
Wang, J.1
Deng, Y.2
Roux, B.3
-
24
-
-
14044276310
-
-
Baron, R.; Bakowies, D.; Van Gunsteren, W. F. J. Pept. Sci. 2005, 11, 74
-
(2005)
J. Pept. Sci.
, vol.11
, pp. 74
-
-
Baron, R.1
Bakowies, D.2
Van Gunsteren, W.F.3
-
25
-
-
70350074297
-
-
Li, D.; Meng, D.; Bruschweiler, R. J. Am. Chem. Soc. 2009, 131, 14610
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 14610
-
-
Li, D.1
Meng, D.2
Bruschweiler, R.3
-
26
-
-
65549109031
-
-
Killian, B. J.; Yudenfreund Kravitz, J.; Somani, S.; Dasgupta, P.; Pang, Y.-P.; Gilson, M. K. J. Mol. Biol. 2009, 389, 315
-
(2009)
J. Mol. Biol.
, vol.389
, pp. 315
-
-
Killian, B.J.1
Yudenfreund Kravitz, J.2
Somani, S.3
Dasgupta, P.4
Pang, Y.-P.5
Gilson, M.K.6
-
29
-
-
0029878140
-
-
Janin, J. Proteins-Struct., Funct., Genet. 1995, 24, R1
-
(1995)
Proteins-Struct., Funct., Genet.
, vol.24
, pp. 1
-
-
Janin, J.1
-
32
-
-
0034870959
-
-
Yu, Y. B.; Privalov, P. L.; Hodges, R. S. Biophys. J. 2001, 81, 1632
-
(2001)
Biophys. J.
, vol.81
, pp. 1632
-
-
Yu, Y.B.1
Privalov, P.L.2
Hodges, R.S.3
-
35
-
-
0028127923
-
-
Murphy, K. P.; Xie, D.; Thompson, K.; Amzel, M.; Freire, E. Proteins 1994, 18, 63
-
(1994)
Proteins
, vol.18
, pp. 63
-
-
Murphy, K.P.1
Xie, D.2
Thompson, K.3
Amzel, M.4
Freire, E.5
-
36
-
-
0000913277
-
-
Mammen, M.; Shakhnovich, E.; Deutch, J.; Whitesides, G. J. Org. Chem. 1998, 63, 3821
-
(1998)
J. Org. Chem.
, vol.63
, pp. 3821
-
-
Mammen, M.1
Shakhnovich, E.2
Deutch, J.3
Whitesides, G.4
-
40
-
-
0031058541
-
-
Gilson, M. K.; Given, J. A.; Bush, B. L.; McCammon, J. A. Biophys. J. 1997, 72, 1047
-
(1997)
Biophys. J.
, vol.72
, pp. 1047
-
-
Gilson, M.K.1
Given, J.A.2
Bush, B.L.3
McCammon, J.A.4
-
42
-
-
0347949637
-
-
Swanson, J. M.; Henchman, R.; McCammon, J. A. Biophys. J. 2004, 86, 67
-
(2004)
Biophys. J.
, vol.86
, pp. 67
-
-
Swanson, J.M.1
Henchman, R.2
McCammon, J.A.3
-
43
-
-
74049103875
-
Potential functions for virtual screening and ligand binding calculations: Some theoretical considerations
-
In;;, Eds.; CRC Press: Boca Raton, FL,; Chapter 9.
-
Sharp, K. Potential functions for virtual screening and ligand binding calculations: Some theoretical considerations. In Virtual Screening in Drug Discovery; Alvarez, J.; Shoichet, B., Eds.; CRC Press: Boca Raton, FL, 2005; Chapter 9.
-
(2005)
Virtual Screening in Drug Discovery
-
-
Sharp, K.1
Alvarez, J.2
Shoichet, B.3
-
45
-
-
68949141761
-
-
Hensen, U.; Grubmüller, H.; Lange, O. F. Phys. Rev. E 2009, 80, 011913
-
(2009)
Phys. Rev. e
, vol.80
, pp. 011913
-
-
Hensen, U.1
Grubmüller, H.2
Lange, O.F.3
-
46
-
-
78650094737
-
-
Li, D.-W.; Showalter, S.; Bruschweiler, R. J. Phys. Chem. B 2010, 114, 16036
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 16036
-
-
Li, D.-W.1
Showalter, S.2
Bruschweiler, R.3
-
49
-
-
0000961995
-
-
Levy, R.; Karplus, M.; Kushick, J.; Perahia, D. Macromolecules 1984, 17, 1370
-
(1984)
Macromolecules
, vol.17
, pp. 1370
-
-
Levy, R.1
Karplus, M.2
Kushick, J.3
Perahia, D.4
-
52
-
-
0034323089
-
-
Schafer, H.; Mark, A.; van Gunsteren, W. J. Chem. Phys. 2000, 113, 7809
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 7809
-
-
Schafer, H.1
Mark, A.2
Van Gunsteren, W.3
-
54
-
-
33846822002
-
-
Chang, C. A.; Chen, W.; Gilson, M. K. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 1534
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 1534
-
-
Chang, C.A.1
Chen, W.2
Gilson, M.K.3
-
56
-
-
33847642496
-
-
Hnizdo, V.; Darian, E.; Fedorowicz, A.; Demchuk, E.; Li, S.; Singh, H. J. Comput. Chem. 2007, 28, 655
-
(2007)
J. Comput. Chem.
, vol.28
, pp. 655
-
-
Hnizdo, V.1
Darian, E.2
Fedorowicz, A.3
Demchuk, E.4
Li, S.5
Singh, H.6
-
57
-
-
0031079364
-
-
Head, M. S.; Given, J. A.; Gilson, M. K. J. Phys. Chem. A 1997, 101, 1609
-
(1997)
J. Phys. Chem. A
, vol.101
, pp. 1609
-
-
Head, M.S.1
Given, J.A.2
Gilson, M.K.3
-
58
-
-
0035144771
-
-
David, L.; Luo, R.; Gilson, M. K. J. Comput.-Aided Mol. Des. 2001, 15, 157
-
(2001)
J. Comput.-Aided Mol. Des.
, vol.15
, pp. 157
-
-
David, L.1
Luo, R.2
Gilson, M.K.3
-
59
-
-
78149429655
-
-
Chen, K.; Gilson, M.; Webb, S.; Potter, M. J. Chem. Theory Comput. 2010, 6, 3540
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 3540
-
-
Chen, K.1
Gilson, M.2
Webb, S.3
Potter, M.4
-
60
-
-
0037473066
-
-
Chang, C.-E.; Potter, M. J.; Gilson, M. K. J. Phys. Chem. B 2003, 107, 1048
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 1048
-
-
Chang, C.-E.1
Potter, M.J.2
Gilson, M.K.3
-
61
-
-
34547227692
-
-
Killian, B. J.; Kravitz, J.; Gilson, M. K. J. Chem. Phys. 2007, 127, 024107
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 024107
-
-
Killian, B.J.1
Kravitz, J.2
Gilson, M.K.3
-
62
-
-
46449096350
-
-
Hnizdo, V.; Tan, J.; Killian, B. J.; Gilson, M. K. J. Comput. Chem. 2008, 29, 1605
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1605
-
-
Hnizdo, V.1
Tan, J.2
Killian, B.J.3
Gilson, M.K.4
-
63
-
-
64549160226
-
-
Somani, S.; Killian, B. J.; Gilson, M. K. J. Chem. Phys. 2009, 130, 134102
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 134102
-
-
Somani, S.1
Killian, B.J.2
Gilson, M.K.3
-
64
-
-
0011146589
-
-
Rojas, O.; Levy, R. M.; Szabo, A. J. Chem. Phys. 1986, 85, 1037
-
(1986)
J. Chem. Phys.
, vol.85
, pp. 1037
-
-
Rojas, O.1
Levy, R.M.2
Szabo, A.3
-
65
-
-
25844492293
-
-
Chang, C.-E.; Chen, W.; Gilson, M. K. J. Chem. Theory Comput. 2005, 1, 1017
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 1017
-
-
Chang, C.-E.1
Chen, W.2
Gilson, M.K.3
-
66
-
-
73949098933
-
-
Baron, R.; Hunenberger, P. H.; McCammon, J. A. J. Chem. Theory Comput. 2009, 5, 3150
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 3150
-
-
Baron, R.1
Hunenberger, P.H.2
McCammon, J.A.3
-
68
-
-
77949608591
-
-
Hensen, U.; Lange, O. F.; Grubmüller, H. PLoS One 2010, 5, e9179
-
(2010)
PLoS One
, vol.5
, pp. 9179
-
-
Hensen, U.1
Lange, O.F.2
Grubmüller, H.3
-
69
-
-
33746837811
-
-
Baron, R.; deVries, A.; Hunenberger, P. H.; van Gunsteren, W. J. Phys. Chem. B 2006, 110, 15602
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 15602
-
-
Baron, R.1
Devries, A.2
Hunenberger, P.H.3
Van Gunsteren, W.4
-
70
-
-
34250853492
-
-
Baron, R.; Van Gunsteren, W. F.; Hünenberger, P. H. Trends Phys. Chem. 2006, 11, 87
-
(2006)
Trends Phys. Chem.
, vol.11
, pp. 87
-
-
Baron, R.1
Van Gunsteren, W.F.2
Hünenberger, P.H.3
-
71
-
-
0001064378
-
-
Di Nola, A.; Berendsen, H.; Edholm, O. Mol. Phys. 1984, 17, 2044
-
(1984)
Mol. Phys.
, vol.17
, pp. 2044
-
-
Di Nola, A.1
Berendsen, H.2
Edholm, O.3
-
72
-
-
84986512474
-
-
Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
73
-
-
0000224283
-
CHARMM: The Energy Function and Its Parameterization with an Overview of the Program
-
In;, Ed.; John Wiley & Sons: Chichester, U.K.,; Vol., p.
-
MacKerell, A. D.; Brooks, B.; Brooks, C. L.; Nilsson, L.; Roux, B.; Won, Y.; Karplus, M. CHARMM: The Energy Function and Its Parameterization with an Overview of the Program. In The Encyclopedia of Computational Chemistry; Schleyer, P. v. R., Ed.; John Wiley & Sons: Chichester, U.K., 1998; Vol. 1, p 271.
-
(1998)
The Encyclopedia of Computational Chemistry
, vol.1
, pp. 271
-
-
MacKerell, A.D.1
Brooks, B.2
Brooks, C.L.3
Nilsson, L.4
Roux, B.5
Won, Y.6
Karplus, M.7
Schleyer V. P, R.8
-
76
-
-
9244259076
-
-
Prabhu, N. V.; Zhu, P.-J.; Sharp, K. A. J. Comput. Chem. 2004, 25, 2049
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 2049
-
-
Prabhu, N.V.1
Zhu, P.-J.2
Sharp, K.A.3
-
77
-
-
42149159601
-
-
Prabhu, N.; Panda, M.; Yang, Q.; Sharp, K. J. Comput. Chem. 2008, 29, 1113
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1113
-
-
Prabhu, N.1
Panda, M.2
Yang, Q.3
Sharp, K.4
-
78
-
-
0035971738
-
-
Grant, J. A.; Pickup, B. T.; Nicholls, A. J. Comput. Chem. 2001, 22, 608
-
(2001)
J. Comput. Chem.
, vol.22
, pp. 608
-
-
Grant, J.A.1
Pickup, B.T.2
Nicholls, A.3
-
80
-
-
0004161838
-
-
Cambridge University Press: Cambridge, U.K.
-
Press, W.; Flannery, B.; Teukolsky, S.; Vetterling, W. Numerical Recipes; Cambridge University Press: Cambridge, U.K., 1986.
-
(1986)
Numerical Recipes
-
-
Press, W.1
Flannery, B.2
Teukolsky, S.3
Vetterling, W.4
-
85
-
-
0033621044
-
-
Kuntz, I. D.; Chen, K.; Sharp, K.; Kollman, P. Proc. Natl. Acad. Sci. U. S. A. 1999, 96, 9997
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 9997
-
-
Kuntz, I.D.1
Chen, K.2
Sharp, K.3
Kollman, P.4
-
86
-
-
0036721253
-
-
Brooijmans, N.; Sharp, K. A.; Kuntz, I. D. Proteins 2002, 48, 645
-
(2002)
Proteins
, vol.48
, pp. 645
-
-
Brooijmans, N.1
Sharp, K.A.2
Kuntz, I.D.3
-
87
-
-
16344395749
-
-
Chen, W.; Chang, C.-E.; Gilson, M. K. Biophys. J. 2004, 87, 3035
-
(2004)
Biophys. J.
, vol.87
, pp. 3035
-
-
Chen, W.1
Chang, C.-E.2
Gilson, M.K.3
-
89
-
-
44949167588
-
-
Chang, C. A.; McLaughlin, W.; Baron, R.; Wang, W.; Andrew, M. J. Proc. Natl. Acad. Sci. U. S. A. 2008, 105, 7456
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 7456
-
-
Chang, C.A.1
McLaughlin, W.2
Baron, R.3
Wang, W.4
Andrew, M.J.5
|