-
1
-
-
0032885388
-
Mammalian caspases: structure, activation, substrates, and functions during apoptosis
-
Earnshaw W.C., Martins L.M., Kaufmann S.H. Mammalian caspases: structure, activation, substrates, and functions during apoptosis. Annu Rev Biochem 1999, 68:383-424.
-
(1999)
Annu Rev Biochem
, vol.68
, pp. 383-424
-
-
Earnshaw, W.C.1
Martins, L.M.2
Kaufmann, S.H.3
-
2
-
-
0034522342
-
Caspases: key players in programmed cell death
-
Grütter M.G. Caspases: key players in programmed cell death. Curr Opin Struct Biol 2000, 10:649-655.
-
(2000)
Curr Opin Struct Biol
, vol.10
, pp. 649-655
-
-
Grütter, M.G.1
-
3
-
-
84255210700
-
Molecular definitions of cell death subroutines: recommendations of the Nomenclature Committee on Cell Death 2012
-
Galluzzi L., Vitale I., Abrams J.M., Alnemri E.S., Baehrecke E.H., Blagosklonny M.V., et al. Molecular definitions of cell death subroutines: recommendations of the Nomenclature Committee on Cell Death 2012. Cell Death Differ 2012, 19:107-120.
-
(2012)
Cell Death Differ
, vol.19
, pp. 107-120
-
-
Galluzzi, L.1
Vitale, I.2
Abrams, J.M.3
Alnemri, E.S.4
Baehrecke, E.H.5
Blagosklonny, M.V.6
-
4
-
-
0032894113
-
Apoptosis: an innate immune response to virus infection
-
Everett H., McFadden G. Apoptosis: an innate immune response to virus infection. Tren Micro Biol 1999, 7:160-165.
-
(1999)
Tren Micro Biol
, vol.7
, pp. 160-165
-
-
Everett, H.1
McFadden, G.2
-
5
-
-
0035728468
-
Apoptosis: the quiet death silences the immune system
-
Sun E.W., Shi Y.F. Apoptosis: the quiet death silences the immune system. Pharmacol Ther 2001, 92:135-145.
-
(2001)
Pharmacol Ther
, vol.92
, pp. 135-145
-
-
Sun, E.W.1
Shi, Y.F.2
-
6
-
-
0032575750
-
Caspases: enemies within
-
Thornberry N.A., Lazebnik Y. Caspases: enemies within. Science 1998, 281:1312-1316.
-
(1998)
Science
, vol.281
, pp. 1312-1316
-
-
Thornberry, N.A.1
Lazebnik, Y.2
-
7
-
-
0030931876
-
Caspases: the executioners of apoptosis
-
Cohen G.M. Caspases: the executioners of apoptosis. Biochem J 1997, 326:1-16.
-
(1997)
Biochem J
, vol.326
, pp. 1-16
-
-
Cohen, G.M.1
-
8
-
-
0032785021
-
Caspase structure, proteolytic substrates, and function during apoptotic cell death
-
Nicholson D.W. Caspase structure, proteolytic substrates, and function during apoptotic cell death. Cell Death Differ 1999, 6:1028-1042.
-
(1999)
Cell Death Differ
, vol.6
, pp. 1028-1042
-
-
Nicholson, D.W.1
-
9
-
-
33745260957
-
Extended substrate recognition in caspase-3 revealed by high resolution X-ray structure analysis
-
Ganesan R., Mittl P.R., Jelakovic S., Grütter M.G. Extended substrate recognition in caspase-3 revealed by high resolution X-ray structure analysis. J Mol Biol 2006, 359:1378-1388.
-
(2006)
J Mol Biol
, vol.359
, pp. 1378-1388
-
-
Ganesan, R.1
Mittl, P.R.2
Jelakovic, S.3
Grütter, M.G.4
-
11
-
-
10644282148
-
The protein structures that shape caspase activity, specificity, activation and inhibition
-
Fuentes-Prior P., Salvesen G.S. The protein structures that shape caspase activity, specificity, activation and inhibition. Biochem J 2004, 1(384):201-232.
-
(2004)
Biochem J
, vol.1
, Issue.384
, pp. 201-232
-
-
Fuentes-Prior, P.1
Salvesen, G.S.2
-
12
-
-
78449269290
-
Caspase-1-induced pyroptosis is an innate immune effector mechanism against intracellular bacteria
-
Miao E.A., Leaf I.A., Treuting P.M., Mao D.P., Dors M., Sarkar A., et al. Caspase-1-induced pyroptosis is an innate immune effector mechanism against intracellular bacteria. Nat Immunol 2010, 11:1136-1142.
-
(2010)
Nat Immunol
, vol.11
, pp. 1136-1142
-
-
Miao, E.A.1
Leaf, I.A.2
Treuting, P.M.3
Mao, D.P.4
Dors, M.5
Sarkar, A.6
-
13
-
-
27744477444
-
Mammalian initiator apoptotic caspases
-
Ho P.K., Hawkins C.J. Mammalian initiator apoptotic caspases. FEBS J 2005, 272:5436-5453.
-
(2005)
FEBS J
, vol.272
, pp. 5436-5453
-
-
Ho, P.K.1
Hawkins, C.J.2
-
14
-
-
1642474148
-
Caspases: an ancient cellular sword of Damocles
-
Boyce M., Degterev A., Yuan J. Caspases: an ancient cellular sword of Damocles. Cell Death Differ 2004, 11:29-37.
-
(2004)
Cell Death Differ
, vol.11
, pp. 29-37
-
-
Boyce, M.1
Degterev, A.2
Yuan, J.3
-
15
-
-
0033082995
-
IAP family proteins-suppressors of apoptosis
-
Deveraux Q.L., Reed J.C. IAP family proteins-suppressors of apoptosis. Genes Dev 1999, 13:239-252.
-
(1999)
Genes Dev
, vol.13
, pp. 239-252
-
-
Deveraux, Q.L.1
Reed, J.C.2
-
16
-
-
26444560960
-
Caspases: pharmacological manipulation of cell death
-
Lavrik I.N., Golks A., Krammer P.H. Caspases: pharmacological manipulation of cell death. J Clin Invest 2005, 115:2665-2672.
-
(2005)
J Clin Invest
, vol.115
, pp. 2665-2672
-
-
Lavrik, I.N.1
Golks, A.2
Krammer, P.H.3
-
17
-
-
33748785440
-
Molecular cloning and characterisation of sea bass (Dicentrarchus labrax L.) caspase-3 gene
-
Reis M.I., Nascimento D.S., do Vale A., Silva M.T., dos Santos N.M. Molecular cloning and characterisation of sea bass (Dicentrarchus labrax L.) caspase-3 gene. Mol Immunol 2007, 44:774-783.
-
(2007)
Mol Immunol
, vol.44
, pp. 774-783
-
-
Reis, M.I.1
Nascimento, D.S.2
do Vale, A.3
Silva, M.T.4
dos Santos, N.M.5
-
18
-
-
0035890676
-
Characterization of zebrafish caspase-3 and induction of apoptosis through ceramide generation in fish fathead minnow tailbud cells and zebrafish embryo
-
Yabu T., Kishi S., Okazaki T., Yamashita M. Characterization of zebrafish caspase-3 and induction of apoptosis through ceramide generation in fish fathead minnow tailbud cells and zebrafish embryo. Biochem J 2001, 360:39-47.
-
(2001)
Biochem J
, vol.360
, pp. 39-47
-
-
Yabu, T.1
Kishi, S.2
Okazaki, T.3
Yamashita, M.4
-
19
-
-
79952185199
-
Molecular cloning and characterization of caspase-3 in large yellow croaker (Pseudosciaena crocea)
-
Li M., Ding Y., Mu Y., Ao J., Chen X. Molecular cloning and characterization of caspase-3 in large yellow croaker (Pseudosciaena crocea). Fish Shellfish Immunol 2011, 30:910-916.
-
(2011)
Fish Shellfish Immunol
, vol.30
, pp. 910-916
-
-
Li, M.1
Ding, Y.2
Mu, Y.3
Ao, J.4
Chen, X.5
-
20
-
-
33646525220
-
Cloning and characterization of the executioner caspases 3, 6, 7 and Hsp70 in hyperthermic Atlantic salmon (Salmo salar) embryos
-
Takle H., McLeod A., Andersen O. Cloning and characterization of the executioner caspases 3, 6, 7 and Hsp70 in hyperthermic Atlantic salmon (Salmo salar) embryos. Comp Biochem Physiol B Biochem Mol Biol 2006, 144:188-198.
-
(2006)
Comp Biochem Physiol B Biochem Mol Biol
, vol.144
, pp. 188-198
-
-
Takle, H.1
McLeod, A.2
Andersen, O.3
-
21
-
-
0034093094
-
A detailed linkage map of Medaka, Oryzias latipes: comparative genomics and genome evolution
-
Naruse K., Fukamachi S., Mitani H., Kondo M., Matsuoka T., Kondo S., et al. A detailed linkage map of Medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 2000, 154:1773-1784.
-
(2000)
Genetics
, vol.154
, pp. 1773-1784
-
-
Naruse, K.1
Fukamachi, S.2
Mitani, H.3
Kondo, M.4
Matsuoka, T.5
Kondo, S.6
-
22
-
-
50849142874
-
Functional characterization of the RNase III gene of rock bream iridovirus
-
Zenke K., Kim K.H. Functional characterization of the RNase III gene of rock bream iridovirus. Arch Virol 2008, 153:1651-1656.
-
(2008)
Arch Virol
, vol.153
, pp. 1651-1656
-
-
Zenke, K.1
Kim, K.H.2
-
23
-
-
66349096013
-
Disease control in Korean aquaculture
-
Park S.L. Disease control in Korean aquaculture. Fish Pathol 2009, 44:19-23.
-
(2009)
Fish Pathol
, vol.44
, pp. 19-23
-
-
Park, S.L.1
-
24
-
-
80052503306
-
Characterization and expression analysis of the myeloid differentiation factor 88 (MyD88) in rock bream Oplegnathus fasciatus
-
Whang I., Lee Y., Kim H., Jung S.J., Oh M.J., Choi C.Y., et al. Characterization and expression analysis of the myeloid differentiation factor 88 (MyD88) in rock bream Oplegnathus fasciatus. Mol Biol Rep 2011, 38:3911-3920.
-
(2011)
Mol Biol Rep
, vol.38
, pp. 3911-3920
-
-
Whang, I.1
Lee, Y.2
Kim, H.3
Jung, S.J.4
Oh, M.J.5
Choi, C.Y.6
-
25
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
26
-
-
0034740227
-
Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome
-
Reese M.G. Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput Chem 2001 Dec, 26(1):51-56.
-
(2001)
Comput Chem
, vol.26
, Issue.1
, pp. 51-56
-
-
Reese, M.G.1
-
27
-
-
77954065271
-
TASSER: a unified platform for automated protein structure and function prediction
-
Roy A., Kucukural A., Zhang Y.I. TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 2010, 5:725-738.
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.I.3
-
28
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang Y. I-TASSER server for protein 3D structure prediction. BMC Bioinform 2008, 9:40.
-
(2008)
BMC Bioinform
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
29
-
-
79954970216
-
Rock bream (Oplegnathus fasciatus) serpin, protease nexin-1: transcriptional analysis and characterization of its antiprotease and anticoagulant activities
-
Umasuthan N., Whang I., Kim J.O., Oh M.J., Jung S.J., Choi C.Y., et al. Rock bream (Oplegnathus fasciatus) serpin, protease nexin-1: transcriptional analysis and characterization of its antiprotease and anticoagulant activities. Dev Comp Immunol 2011, 35:785-798.
-
(2011)
Dev Comp Immunol
, vol.35
, pp. 785-798
-
-
Umasuthan, N.1
Whang, I.2
Kim, J.O.3
Oh, M.J.4
Jung, S.J.5
Choi, C.Y.6
-
30
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
31
-
-
79551634460
-
Characterization and expression analysis of a goose-type lysozyme from the rock bream Oplegnathus fasciatus, and antimicrobial activity of its recombinant protein
-
Whang I., Lee Y., Lee S., Oh M.J., Jung S.J., Choi C.Y., et al. Characterization and expression analysis of a goose-type lysozyme from the rock bream Oplegnathus fasciatus, and antimicrobial activity of its recombinant protein. Fish Shellfish Immunol 2011, 30:532-542.
-
(2011)
Fish Shellfish Immunol
, vol.30
, pp. 532-542
-
-
Whang, I.1
Lee, Y.2
Lee, S.3
Oh, M.J.4
Jung, S.J.5
Choi, C.Y.6
-
32
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25:402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
33
-
-
0033999220
-
Caspase-3 and -6 expression and enzyme activity in hen granulosa cells
-
Johnson A.L., Bridgham J.T. Caspase-3 and -6 expression and enzyme activity in hen granulosa cells. Biol Reprod 2000, 62:589-598.
-
(2000)
Biol Reprod
, vol.62
, pp. 589-598
-
-
Johnson, A.L.1
Bridgham, J.T.2
-
34
-
-
0021271957
-
Cell attachment activity of fibronectin can be duplicated by small synthetic fragments of the molecule
-
Pierschbacher M.D., Ruoslahti E. Cell attachment activity of fibronectin can be duplicated by small synthetic fragments of the molecule. Nature 1984, 309:30-33.
-
(1984)
Nature
, vol.309
, pp. 30-33
-
-
Pierschbacher, M.D.1
Ruoslahti, E.2
-
35
-
-
0037041012
-
Identification and functional analysis of the rat caspase-3 gene promoter
-
Liu W., Wang G., Yakovlev A.G. Identification and functional analysis of the rat caspase-3 gene promoter. J Biol Chem 2002, 277:8273-8278.
-
(2002)
J Biol Chem
, vol.277
, pp. 8273-8278
-
-
Liu, W.1
Wang, G.2
Yakovlev, A.G.3
-
36
-
-
0042346302
-
The human caspase-8 promoter sustains basal activity through SP1 and ETS-like transcription factors and can be up-regulated by a p53-dependent mechanism
-
Liedtke C., Groger N., Manns M.P., Trautwein C. The human caspase-8 promoter sustains basal activity through SP1 and ETS-like transcription factors and can be up-regulated by a p53-dependent mechanism. J Biol Chem 2003, 278:27593-27604.
-
(2003)
J Biol Chem
, vol.278
, pp. 27593-27604
-
-
Liedtke, C.1
Groger, N.2
Manns, M.P.3
Trautwein, C.4
-
37
-
-
15844393657
-
The three-dimensional structure of apopain/CPP32, a key mediator of apoptosis
-
Rotonda J., Nicholson D.W., Fazil K.M., Gallant M., Gareau Y., Labelle M., et al. The three-dimensional structure of apopain/CPP32, a key mediator of apoptosis. Nat Struct Biol 1996, 3:619-625.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 619-625
-
-
Rotonda, J.1
Nicholson, D.W.2
Fazil, K.M.3
Gallant, M.4
Gareau, Y.5
Labelle, M.6
-
38
-
-
0034440818
-
Proteases for cell suicide: functions and regulation of caspases
-
Chang H.Y., Yang X. Proteases for cell suicide: functions and regulation of caspases. Microbiol Mol Biol Rev 2000, 64:821-846.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 821-846
-
-
Chang, H.Y.1
Yang, X.2
-
39
-
-
8144222650
-
Caspases: the executioners of apoptosis
-
Gerald M. Caspases: the executioners of apoptosis. Biochem J Rev 1997, 326:1-16.
-
(1997)
Biochem J Rev
, vol.326
, pp. 1-16
-
-
Gerald, M.1
-
40
-
-
0034927279
-
Biomarkers of apoptosis: release of cytochrome c, activation of caspase-3, induction of 8-hydroxy-2'-deoxyguanosine, increased 3-nitrotyrosine, and alteration of p53 gene
-
Abu-Qare A.W., Abou-Donia M.B. Biomarkers of apoptosis: release of cytochrome c, activation of caspase-3, induction of 8-hydroxy-2'-deoxyguanosine, increased 3-nitrotyrosine, and alteration of p53 gene. J Toxicol Environ Health B Crit Rev 2001, 4:313-332.
-
(2001)
J Toxicol Environ Health B Crit Rev
, vol.4
, pp. 313-332
-
-
Abu-Qare, A.W.1
Abou-Donia, M.B.2
-
41
-
-
33750877931
-
Molecular characterization of rabbit CPP32 and its function in vascular smooth muscle cell apoptosis
-
Wang H., Keiser J.A. Molecular characterization of rabbit CPP32 and its function in vascular smooth muscle cell apoptosis. Am J Physiol 1998, 274:1132-1140.
-
(1998)
Am J Physiol
, vol.274
, pp. 1132-1140
-
-
Wang, H.1
Keiser, J.A.2
-
42
-
-
0027973061
-
CPP32, a novel human apoptotic protein with homology to Caenorhabditis elegans cell death protein Ced-3 and mammalian interleukin-1 beta-converting enzyme
-
Fernandes-Alnemri T., Litwack G., Alnemri E.S. CPP32, a novel human apoptotic protein with homology to Caenorhabditis elegans cell death protein Ced-3 and mammalian interleukin-1 beta-converting enzyme. J Biol Chem 1994, 269:30761-30764.
-
(1994)
J Biol Chem
, vol.269
, pp. 30761-30764
-
-
Fernandes-Alnemri, T.1
Litwack, G.2
Alnemri, E.S.3
-
43
-
-
0023403099
-
GCN4, a eukaryotic transcriptional activator protein, binds as a dimer to target DNA
-
Hope I.A., Struhl K. GCN4, a eukaryotic transcriptional activator protein, binds as a dimer to target DNA. EMBO J 1987, 6:2781-2784.
-
(1987)
EMBO J
, vol.6
, pp. 2781-2784
-
-
Hope, I.A.1
Struhl, K.2
-
44
-
-
0035104119
-
LPS induction of gene expression in human monocytes
-
Guha M., Mackman N. LPS induction of gene expression in human monocytes. Cell Signal 2001, 13:85-94.
-
(2001)
Cell Signal
, vol.13
, pp. 85-94
-
-
Guha, M.1
Mackman, N.2
-
45
-
-
0035810956
-
Expression of the Oct-1 transcription factor and characterization of its interactions with the Bob1 coactivator
-
Lee L., Stollar E., Chang J., Grossmann J.G., O'Brien R., Ladbury J., et al. Expression of the Oct-1 transcription factor and characterization of its interactions with the Bob1 coactivator. Biochemistry 2001, 40:6580-6588.
-
(2001)
Biochemistry
, vol.40
, pp. 6580-6588
-
-
Lee, L.1
Stollar, E.2
Chang, J.3
Grossmann, J.G.4
O'Brien, R.5
Ladbury, J.6
-
46
-
-
24044490922
-
Inhibition of Wnt16 in human acute lymphoblastoid leukemia cells containing the translocation induces apoptosis
-
Mazieres J., You L., He B., Xu Z., Lee A.Y., Mikami I., et al. Inhibition of Wnt16 in human acute lymphoblastoid leukemia cells containing the translocation induces apoptosis. Oncogene 2005, 24:5396-5400.
-
(2005)
Oncogene
, vol.24
, pp. 5396-5400
-
-
Mazieres, J.1
You, L.2
He, B.3
Xu, Z.4
Lee, A.Y.5
Mikami, I.6
-
47
-
-
0033575255
-
Suicidal tendencies: apoptotic cell death by caspase family proteinases
-
Wolf B.B., Green D.R. Suicidal tendencies: apoptotic cell death by caspase family proteinases. J Biol Chem 1999, 274:20049-20052.
-
(1999)
J Biol Chem
, vol.274
, pp. 20049-20052
-
-
Wolf, B.B.1
Green, D.R.2
-
48
-
-
33745644229
-
Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition
-
Fang B., Boross P.I., Tozser J., Weber I.T. Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition. J Mol Biol 2006, 360:654-666.
-
(2006)
J Mol Biol
, vol.360
, pp. 654-666
-
-
Fang, B.1
Boross, P.I.2
Tozser, J.3
Weber, I.T.4
-
49
-
-
0034070797
-
The liver as a crucial organ in the first line of host defense: the roles of Kupffer cells, natural killer (NK) cells and NK1.1 Ag+ T cells in T helper 1 immune responses
-
Seki S., Habu Y., Kawamura T., Takeda K., Dobashi H., Ohkawa T., et al. The liver as a crucial organ in the first line of host defense: the roles of Kupffer cells, natural killer (NK) cells and NK1.1 Ag+ T cells in T helper 1 immune responses. Immunol Rev 2000, 174:35-46.
-
(2000)
Immunol Rev
, vol.174
, pp. 35-46
-
-
Seki, S.1
Habu, Y.2
Kawamura, T.3
Takeda, K.4
Dobashi, H.5
Ohkawa, T.6
-
51
-
-
0029779360
-
Molecular characterization of mouse and rat CPP32 beta gene encoding a cysteine protease resembling interleukin-1 beta converting enzyme and CED-3
-
Juan T.S., McNiece I.K., Jenkins N.A., Gilbert D.J., Copeland N.G., Fletcher F.A. Molecular characterization of mouse and rat CPP32 beta gene encoding a cysteine protease resembling interleukin-1 beta converting enzyme and CED-3. Oncogene 1996, 13:749-755.
-
(1996)
Oncogene
, vol.13
, pp. 749-755
-
-
Juan, T.S.1
McNiece, I.K.2
Jenkins, N.A.3
Gilbert, D.J.4
Copeland, N.G.5
Fletcher, F.A.6
|