-
1
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized fromdamagedmessengerRNA
-
Keiler, K. C., Waller, P. R. & Sauer, R. T. Role of a peptide tagging system in degradation of proteins synthesized fromdamagedmessengerRNA. Science 271, 990-993 (1996).
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.2
Sauer, R.T.3
-
2
-
-
34247103448
-
The tmRNA system for translational surveillance and ribosome rescue
-
Moore, S. D. & Sauer, R. T. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76, 101-124 (2007).
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 101-124
-
-
Moore, S.D.1
Sauer, R.T.2
-
3
-
-
0242515749
-
Visualizing tmRNA entry into a stalled ribosome
-
Valle, M. et al. Visualizing tmRNA entry into a stalled ribosome. Science 300, 127-130 (2003).
-
(2003)
Science
, vol.300
, pp. 127-130
-
-
Valle, M.1
-
4
-
-
33750838456
-
Cryo-EMvisualization of transfer messenger RNA with twoSmpBs in a stalled ribosome
-
Kaur, S. et al. Cryo-EMvisualization of transfer messenger RNA with twoSmpBs in a stalled ribosome. Proc. Natl Acad. Sci. USA 103, 16484-16489 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 16484-16489
-
-
Kaur, S.1
-
5
-
-
75149143993
-
Accommodation of tmRNA-SmpB into stalled ribosomes: A cryo-EM study
-
Weis, F. et al. Accommodation of tmRNA-SmpB into stalled ribosomes: a cryo-EM study. RNA 16, 299-306 (2010).
-
(2010)
RNA
, vol.16
, pp. 299-306
-
-
Weis, F.1
-
6
-
-
78449290339
-
TmRNA-SmpB: A journey to the centre of the bacterial ribosome
-
Weis, F. et al. tmRNA-SmpB: a journey to the centre of the bacterial ribosome. EMBO J. 29, 3810-3818 (2010).
-
(2010)
EMBO J
, vol.29
, pp. 3810-3818
-
-
Weis, F.1
-
7
-
-
78449274864
-
Visualizing the transfer-messenger RNA as the ribosome resumes translation
-
Fu, J. et al. Visualizing the transfer-messenger RNA as the ribosome resumes translation. EMBO J. 29, 3819-3825 (2010).
-
(2010)
EMBO J
, vol.29
, pp. 3819-3825
-
-
Fu, J.1
-
8
-
-
0041737720
-
Crystal structure of the transfer-RNA domain of transfermessenger RNA in complex with SmpB
-
Gutmann, S. et al. Crystal structure of the transfer-RNA domain of transfermessenger RNA in complex with SmpB. Nature 424, 699-703 (2003).
-
(2003)
Nature
, vol.424
, pp. 699-703
-
-
Gutmann, S.1
-
9
-
-
34347233462
-
Structural basis for functional mimicry of long-variable-armtRNA by transfer-messenger RNA
-
Bessho, Y. et al. Structural basis for functional mimicry of long-variable-armtRNA by transfer-messenger RNA. Proc. Natl Acad. Sci. USA 104, 8293-8298 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 8293-8298
-
-
Bessho, Y.1
-
10
-
-
24044498321
-
Stepping transfermessengerRNA through the ribosome
-
Shpanchenko, O. V. et al. Stepping transfermessengerRNA through the ribosome. J. Biol. Chem. 280, 18368-18374 (2005).
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 18368-18374
-
-
Shpanchenko, O.V.1
-
11
-
-
29244487090
-
Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon
-
Petry, S. et al. Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon. Cell 123, 1255-1266 (2005).
-
(2005)
Cell
, vol.123
, pp. 1255-1266
-
-
Petry, S.1
-
12
-
-
62649162306
-
GTPase activation of elongation factor EF-Tu by the ribosome during decoding
-
Schuette, J. C. et al. GTPase activation of elongation factor EF-Tu by the ribosome during decoding. EMBO J. 28, 755-765 (2009).
-
(2009)
EMBO J
, vol.28
, pp. 755-765
-
-
Schuette, J.C.1
-
13
-
-
33644798018
-
The hybrid state of tRNAbinding is an authentic translation elongation intermediate
-
Dorner, S., Brunelle, J. L.,Sharma, D.&Green, R. The hybrid state of tRNAbinding is an authentic translation elongation intermediate. Nature Struct. Mol. Biol. 13, 234-241 (2006).
-
(2006)
Nature Struct. Mol. Biol.
, vol.13
, pp. 234-241
-
-
Dorner, S.1
Brunelle, J.L.2
Sharma, D.3
Green, R.4
-
14
-
-
79953777970
-
MRNAtranslocation occurs during the second step of ribosomal intersubunit rotation
-
Ermolenko, D. N.& Noller, H. F.mRNAtranslocation occurs during the second step of ribosomal intersubunit rotation. Nature Struct. Mol. Biol. 18, 457-462 (2011).
-
(2011)
Nature Struct. Mol. Biol.
, vol.18
, pp. 457-462
-
-
Ermolenko, D.N.1
Noller, H.F.2
-
15
-
-
77957255312
-
Multiparticle cryo-EM of ribosomes
-
Loerke, J., Giesebrecht, J. & Spahn, C. M. Multiparticle cryo-EM of ribosomes. Methods Enzymol. 483, 161-177 (2010).
-
(2010)
Methods Enzymol.
, vol.483
, pp. 161-177
-
-
Loerke, J.1
Giesebrecht, J.2
Spahn, C.M.3
-
16
-
-
79956303529
-
Structures of thebacterial ribosome in classical and hybrid states of tRNA binding
-
Dunkle, J. A. et al. Structures of thebacterial ribosome in classical and hybrid states of tRNA binding. Science 332, 981-984 (2011).
-
(2011)
Science
, vol.332
, pp. 981-984
-
-
Dunkle, J.A.1
-
17
-
-
70350602056
-
The structure of the ribosome with elongation factor G trapped in the posttranslocational state
-
Gao, Y. G. et al. The structure of the ribosome with elongation factor G trapped in the posttranslocational state. Science 326, 694-699 (2009).
-
(2009)
Science
, vol.326
, pp. 694-699
-
-
Gao, Y.G.1
-
18
-
-
80053155455
-
Crystal structure of the hybrid state of ribosomein complex with theguanosinetriphosphatase release factor3
-
Jin, H., Kelley, A. C. & Ramakrishnan, V. Crystal structure of the hybrid state of ribosomein complex with theguanosinetriphosphatase release factor3. Proc.Natl Acad. Sci. USA 108, 15798-15803 (2011).
-
(2011)
Proc.Natl Acad. Sci. USA
, vol.108
, pp. 15798-15803
-
-
Jin, H.1
Kelley, A.C.2
Ramakrishnan, V.3
-
19
-
-
78649873931
-
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
-
Ratje, A. H. et al. Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites. Nature 468, 713-716 (2010).
-
(2010)
Nature
, vol.468
, pp. 713-716
-
-
Ratje, A.H.1
-
20
-
-
34548339675
-
Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome
-
Spiegel, P. C., Ermolenko, D. N. & Noller, H. Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome. RNA 13, 1473-1482 (2007).
-
(2007)
RNA
, vol.13
, pp. 1473-1482
-
-
Spiegel, P.C.1
Ermolenko, D.N.2
Noller, H.3
-
21
-
-
33751103912
-
Structural basis for messenger RNA movement on the ribosome
-
Yusupova, G. et al. Structural basis for messenger RNA movement on the ribosome. Nature 444, 391-394 (2006).
-
(2006)
Nature
, vol.444
, pp. 391-394
-
-
Yusupova, G.1
-
22
-
-
34047263278
-
The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome
-
Passmore, L. A. et al. The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome. Mol. Cell 26, 41-50 (2007).
-
(2007)
Mol. Cell
, vol.26
, pp. 41-50
-
-
Passmore, L.A.1
-
23
-
-
0035831269
-
HepatitisCvirus IRESRNA-inducedchangesin the conformation of the 40s ribosomal subunit
-
Spahn, C. M. et al.HepatitisCvirus IRESRNA-inducedchangesin the conformation of the 40s ribosomal subunit. Science 291, 1959-1962 (2001).
-
(2001)
Science
, vol.291
, pp. 1959-1962
-
-
Spahn, C.M.1
-
24
-
-
4644247805
-
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor
-
Spahn, C. M. et al. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell 118, 465-475 (2004).
-
(2004)
Cell
, vol.118
, pp. 465-475
-
-
Spahn, C.M.1
-
25
-
-
0034737453
-
Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs
-
Nameki, N., Tadaki, T., Himeno, H. & Muto, A. Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs. FEBS Lett. 470, 345-349 (2000).
-
(2000)
FEBS Lett.
, vol.470
, pp. 345-349
-
-
Nameki, N.1
Tadaki, T.2
Himeno, H.3
Muto, A.4
-
26
-
-
58149091374
-
Escherichia coli tmRNA lacking pseudoknot 1 tags truncated proteins in vivo and in vitro
-
Wower, I. K., Zwieb, C. & Wower, J. Escherichia coli tmRNA lacking pseudoknot 1 tags truncated proteins in vivo and in vitro. RNA 15, 128-137 (2009).
-
(2009)
RNA
, vol.15
, pp. 128-137
-
-
Wower, I.K.1
Zwieb, C.2
Wower, J.3
-
27
-
-
73649149025
-
RRNA mutations that inhibit transfer-messenger RNA activity on stalled ribosomes
-
Crandall, J. et al. rRNA mutations that inhibit transfer-messenger RNA activity on stalled ribosomes. J. Bacteriol. 192, 553-559 (2010).
-
(2010)
J. Bacteriol.
, vol.192
, pp. 553-559
-
-
Crandall, J.1
-
28
-
-
0028910590
-
The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus
-
Shen, L. X.& Tinoco, I. Jr. The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus. J. Mol. Biol. 247, 963-978 (1995).
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 963-978
-
-
Shen, L.X.1
Tinoco Jr., I.2
-
29
-
-
0035958689
-
Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting
-
Michiels, P. J. et al. Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting. J. Mol. Biol. 310, 1109-1123 (2001).
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 1109-1123
-
-
Michiels, P.J.1
-
30
-
-
14644435818
-
Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function
-
Theimer, C. A., Blois, C. A. & Feigon, J. Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function. Mol. Cell 17, 671-682 (2005).
-
(2005)
Mol. Cell
, vol.17
, pp. 671-682
-
-
Theimer, C.A.1
Blois, C.A.2
Feigon, J.3
-
31
-
-
0031014984
-
Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)
-
Felden, B. et al. Probing the structure of the Escherichia coli 10Sa RNA (tmRNA). RNA 3, 89-103 (1997).
-
(1997)
RNA
, vol.3
, pp. 89-103
-
-
Felden, B.1
-
32
-
-
3142562521
-
Maintaining the ribosomal reading frame: The influence of the e site during translational regulation of release factor 2
-
Máquez, V. et al. Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2. Cell 118, 45-55 (2004).
-
(2004)
Cell
, vol.118
, pp. 45-55
-
-
Máquez, V.1
-
33
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway, C. et al. Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 151, 41-60 (2005).
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 41-60
-
-
Suloway, C.1
-
34
-
-
33845449481
-
SIGNATURE: A single-particle selection system for molecular electron microscopy
-
Chen, J. Z. & Grigorieff, N. SIGNATURE: a single-particle selection system for molecular electron microscopy. J. Struct. Biol. 157, 168-173 (2007).
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 168-173
-
-
Chen, J.Z.1
Grigorieff, N.2
-
35
-
-
0029975088
-
SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields
-
Frank, J. et al. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116, 190-199 (1996).
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 190-199
-
-
Frank, J.1
-
36
-
-
33646042904
-
Amethod of focused classification, based on the bootstrap 3D variance analysis, and its application to EF-G-dependent translocation
-
Penczek, P. A., Frank, J.&Spahn, C. M.Amethod of focused classification, based on the bootstrap 3D variance analysis, and its application to EF-G-dependent translocation. J. Struct. Biol. 154, 184-194 (2006).
-
(2006)
J. Struct. Biol.
, vol.154
, pp. 184-194
-
-
Penczek, P.A.1
Frank, J.2
Spahn, C.M.3
-
37
-
-
4444221565
-
UCSF Chimera-A visualization system for exploratory research and analysis
-
Pettersen, E. F. et al. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
38
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer, M. et al. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313, 1935-1942 (2006).
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
-
39
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5A resolution
-
Schuwirth, B. S. et al. Structures of the bacterial ribosome at 3.5A resolution. Science 310, 827-834 (2005).
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
-
40
-
-
84873037275
-
Predicting RNA structure by multiple template homology modeling
-
Flores, S. C., Wan, Y., Russell, Y. & Altman, R. B. Predicting RNA structure by multiple template homology modeling. Pacif. Symp. Biocomput. 2010, 216-227 (2010).
-
(2010)
Pacif. Symp. Biocomput.
, vol.2010
, pp. 216-227
-
-
Flores, S.C.1
Wan, Y.2
Russell, Y.3
Altman, R.B.4
-
41
-
-
79959292152
-
ModeRNA: A tool for comparative modeling of RNA 3D structure
-
Rother, M., Rother, K., Puton, T. & Bujnicki, J. M. ModeRNA: a tool for comparative modeling of RNA 3D structure. Nucleic Acids Res. 39, 4007-4022 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4007-4022
-
-
Rother, M.1
Rother, K.2
Puton, T.3
Bujnicki, J.M.4
-
42
-
-
0043123152
-
Tools for the automatic identification and classification of RNA base pairs
-
Yang, H. et al. Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Res. 31, 3450-3460 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3450-3460
-
-
Yang, H.1
|