메뉴 건너뛰기




Volumn 192, Issue 2, 2010, Pages 553-559

rRNA mutations that inhibit transfer-messenger RNA activity on stalled ribosomes

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; MESSENGER RNA; RIBOSOME RNA; RNA 16S; RNA 23S;

EID: 73649149025     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01178-09     Document Type: Article
Times cited : (6)

References (39)
  • 1
    • 0035985042 scopus 로고    scopus 로고
    • SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli
    • Abo, T., K. Ueda, T. Sunohara, K. Ogawa, and H. Aiba. 2002. SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli. Genes Cells 7:629-638.
    • (2002) Genes Cells , vol.7 , pp. 629-638
    • Abo, T.1    Ueda, K.2    Sunohara, T.3    Ogawa, K.4    Aiba, H.5
  • 3
    • 0033515041 scopus 로고    scopus 로고
    • An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
    • Asai, T., D. Zaporojets, C. Squires, and C. L. Squires. 1999. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc. Natl. Acad. Sci. U. S. A. 96:1971-1976.
    • (1999) Proc. Natl. Acad. Sci. U. S. A , vol.96 , pp. 1971-1976
    • Asai, T.1    Zaporojets, D.2    Squires, C.3    Squires, C.L.4
  • 4
    • 23044445236 scopus 로고    scopus 로고
    • Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression
    • Cruz-Vera, L. R., S. Rajagopal, C. Squires, and C. Yanofsky. 2005. Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression. Mol. Cell 19:333-343.
    • (2005) Mol. Cell , vol.19 , pp. 333-343
    • Cruz-Vera, L.R.1    Rajagopal, S.2    Squires, C.3    Yanofsky, C.4
  • 5
    • 18144409413 scopus 로고    scopus 로고
    • Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation
    • Cukras, A. R., and R. Green. 2005. Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation. J. Mol. Biol. 349:47-59.
    • (2005) J. Mol. Biol , vol.349 , pp. 47-59
    • Cukras, A.R.1    Green, R.2
  • 6
    • 0028302241 scopus 로고
    • CCC.UGA: A new site of ribosomal frameshifting in Escherichia coli
    • de Smit, M. H., J. van Duin, P. H. van Knippenberg, and H. G. van Eijk. 1994. CCC.UGA: a new site of ribosomal frameshifting in Escherichia coli. Gene 143:43-47.
    • (1994) Gene , vol.143 , pp. 43-47
    • de Smit, M.H.1    van Duin, J.2    van Knippenberg, P.H.3    van Eijk, H.G.4
  • 7
    • 17844367581 scopus 로고    scopus 로고
    • Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit
    • Ghosh, S., and S. Joseph. 2005. Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit. RNA 11:657-667.
    • (2005) RNA , vol.11 , pp. 657-667
    • Ghosh, S.1    Joseph, S.2
  • 8
    • 0037072794 scopus 로고    scopus 로고
    • Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination
    • Hayes, C. S., B. Bose, and R. T. Sauer. 2002. Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination. J. Biol. Chem. 277:33825-33832.
    • (2002) J. Biol. Chem , vol.277 , pp. 33825-33832
    • Hayes, C.S.1    Bose, B.2    Sauer, R.T.3
  • 9
    • 0037133638 scopus 로고    scopus 로고
    • Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
    • Hayes, C. S., B. Bose, and R. T. Sauer. 2002. Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99:3440-3445.
    • (2002) Proc. Natl. Acad. Sci. U. S. A , vol.99 , pp. 3440-3445
    • Hayes, C.S.1    Bose, B.2    Sauer, R.T.3
  • 10
    • 0242361562 scopus 로고    scopus 로고
    • Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control
    • Hayes, C. S., and R. T. Sauer. 2003. Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control. Mol. Cell 12:903-911.
    • (2003) Mol. Cell , vol.12 , pp. 903-911
    • Hayes, C.S.1    Sauer, R.T.2
  • 11
    • 0034161440 scopus 로고    scopus 로고
    • Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability
    • Huang, C., M. C. Wolfgang, J. Withey, M. Koomey, and D. I. Friedman. 2000. Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability. EMBO J. 19:1098-1107.
    • (2000) EMBO J , vol.19 , pp. 1098-1107
    • Huang, C.1    Wolfgang, M.C.2    Withey, J.3    Koomey, M.4    Friedman, D.I.5
  • 12
  • 13
    • 0029863608 scopus 로고    scopus 로고
    • Protein-protein interaction: A genetic selection for compensating mutations at the barnase-barstar interface
    • Jucovic, M., and R. W. Hartley. 1996. Protein-protein interaction: a genetic selection for compensating mutations at the barnase-barstar interface. Proc. Natl. Acad. Sci. U. S. A. 93:2343-2347.
    • (1996) Proc. Natl. Acad. Sci. U. S. A , vol.93 , pp. 2343-2347
    • Jucovic, M.1    Hartley, R.W.2
  • 14
    • 0345465673 scopus 로고    scopus 로고
    • SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
    • Karzai, A. W., M. M. Susskind, and R. T. Sauer. 1999. SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J. 18:3793-3799.
    • (1999) EMBO J , vol.18 , pp. 3793-3799
    • Karzai, A.W.1    Susskind, M.M.2    Sauer, R.T.3
  • 15
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler, K. C., P. R. Waller, and R. T. Sauer. 1996. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271:990-993.
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.2    Sauer, R.T.3
  • 16
    • 33845958586 scopus 로고    scopus 로고
    • The A-site finger in 23S rRNA acts as a functional attenuator for translocation
    • Komoda, T., N. S. Sato, S. S. Phelps, N. Namba, S. Joseph, and T. Suzuki. 2006. The A-site finger in 23S rRNA acts as a functional attenuator for translocation. J. Biol. Chem. 281:32303-32309.
    • (2006) J. Biol. Chem , vol.281 , pp. 32303-32309
    • Komoda, T.1    Sato, N.S.2    Phelps, S.S.3    Namba, N.4    Joseph, S.5    Suzuki, T.6
  • 17
    • 33748582906 scopus 로고    scopus 로고
    • Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
    • Korostelev, A., S. Trakhanov, M. Laurberg, and H. F. Noller. 2006. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126:1065-1077.
    • (2006) Cell , vol.126 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 18
    • 31044445793 scopus 로고    scopus 로고
    • Protein tagging at rare codons is caused by tmRNA action at the 3′ end of nonstop mRNA generated in response to ribosome stalling
    • Li, X., R. Hirano, H. Tagami, and H. Aiba. 2006. Protein tagging at rare codons is caused by tmRNA action at the 3′ end of nonstop mRNA generated in response to ribosome stalling. RNA 12:248-255.
    • (2006) RNA , vol.12 , pp. 248-255
    • Li, X.1    Hirano, R.2    Tagami, H.3    Aiba, H.4
  • 19
    • 33749565152 scopus 로고    scopus 로고
    • Mutations in the intersubunit bridge regions of 23 S rRNA
    • Liiv, A., and M. O'Connor. 2006. Mutations in the intersubunit bridge regions of 23 S rRNA. J. Biol. Chem. 281:29850-29862.
    • (2006) J. Biol. Chem , vol.281 , pp. 29850-29862
    • Liiv, A.1    O'Connor, M.2
  • 21
    • 0026723477 scopus 로고
    • Effect of active site residues in barnase on activity and stability
    • Meiering, E. M., L. Serrano, and A. R. Fersht. 1992. Effect of active site residues in barnase on activity and stability. J. Mol. Biol. 225:585-589.
    • (1992) J. Mol. Biol , vol.225 , pp. 585-589
    • Meiering, E.M.1    Serrano, L.2    Fersht, A.R.3
  • 22
    • 48249108321 scopus 로고    scopus 로고
    • The role of upstream sequences in selecting the reading frame on tmRNA
    • Miller, M. R., D. W. Healey, S. G. Robison, J. D. Dewey, and A. R. Buskirk. 2008. The role of upstream sequences in selecting the reading frame on tmRNA. BMC Biol. 6:29.
    • (2008) BMC Biol , vol.6 , pp. 29
    • Miller, M.R.1    Healey, D.W.2    Robison, S.G.3    Dewey, J.D.4    Buskirk, A.R.5
  • 23
    • 26944431987 scopus 로고    scopus 로고
    • Ribosome rescue: TmRNA tagging activity and capacity in Escherichia coli
    • Moore, S. D., and R. T. Sauer. 2005. Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli. Mol. Microbiol. 58:456-466.
    • (2005) Mol. Microbiol , vol.58 , pp. 456-466
    • Moore, S.D.1    Sauer, R.T.2
  • 24
    • 34247103448 scopus 로고    scopus 로고
    • The tmRNA system for translational surveillance and ribosome rescue
    • Moore, S. D., and R. T. Sauer. 2007. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76:101-124.
    • (2007) Annu. Rev. Biochem , vol.76 , pp. 101-124
    • Moore, S.D.1    Sauer, R.T.2
  • 25
    • 0037040411 scopus 로고    scopus 로고
    • The ribosomal exit tunnel functions as a discriminating gate
    • Nakatogawa, H., and K. Ito. 2002. The ribosomal exit tunnel functions as a discriminating gate. Cell 108:629-636.
    • (2002) Cell , vol.108 , pp. 629-636
    • Nakatogawa, H.1    Ito, K.2
  • 26
    • 0036464560 scopus 로고    scopus 로고
    • Imbalance of tRNA(Pro) isoacceptors induces +1 frameshifting at near-cognate codons
    • O'Connor, M. 2002. Imbalance of tRNA(Pro) isoacceptors induces +1 frameshifting at near-cognate codons. Nucleic Acids Res. 30:759-765.
    • (2002) Nucleic Acids Res , vol.30 , pp. 759-765
    • O'Connor, M.1
  • 27
    • 0028846430 scopus 로고
    • The ribosomal neighbourhood of the central fold of tRNA: Cross-links from position 47 of tRNA located at the A, P or E site
    • Osswald, M., T. Doring, and R. Brimacombe. 1995. The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site. Nucleic Acids Res. 23:4635-4641.
    • (1995) Nucleic Acids Res , vol.23 , pp. 4635-4641
    • Osswald, M.1    Doring, T.2    Brimacombe, R.3
  • 28
    • 17844375121 scopus 로고    scopus 로고
    • Hinge-like motions in RNA kink-turns: The role of the second a-minor motif and nominally unpaired bases
    • Razga, F., J. Koca, J. Sponer, and N. B. Leontis. 2005. Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases. Biophys. J. 88:3466-3485.
    • (2005) Biophys. J , vol.88 , pp. 3466-3485
    • Razga, F.1    Koca, J.2    Sponer, J.3    Leontis, N.B.4
  • 29
    • 0035958905 scopus 로고    scopus 로고
    • Identification of endogenous SsrAtagged proteins reveals tagging at positions corresponding to stop codons
    • Roche, E. D., and R. T. Sauer. 2001. Identification of endogenous SsrAtagged proteins reveals tagging at positions corresponding to stop codons. J. Biol. Chem. 276:28509-28515.
    • (2001) J. Biol. Chem , vol.276 , pp. 28509-28515
    • Roche, E.D.1    Sauer, R.T.2
  • 30
    • 0033575660 scopus 로고    scopus 로고
    • SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
    • Roche, E. D., and R. T. Sauer. 1999. SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J. 18:4579-4589.
    • (1999) EMBO J , vol.18 , pp. 4579-4589
    • Roche, E.D.1    Sauer, R.T.2
  • 31
    • 25144497020 scopus 로고    scopus 로고
    • The conserved A-site finger of the 23S rRNA: Just one of the intersubunit bridges or a part of the allosteric communication pathway?
    • Sergiev, P. V., S. V. Kiparisov, D. E. Burakovsky, D. V. Lesnyak, A. A. Leonov, A. A. Bogdanov, and O. A. Dontsova. 2005. The conserved A-site finger of the 23S rRNA: just one of the intersubunit bridges or a part of the allosteric communication pathway? J. Mol. Biol. 353:116-123.
    • (2005) J. Mol. Biol , vol.353 , pp. 116-123
    • Sergiev, P.V.1    Kiparisov, S.V.2    Burakovsky, D.E.3    Lesnyak, D.V.4    Leonov, A.A.5    Bogdanov, A.A.6    Dontsova, O.A.7
  • 33
    • 33744505213 scopus 로고    scopus 로고
    • Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1
    • Tanner, D. R., J. D. Dewey, M. R. Miller, and A. R. Buskirk. 2006. Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1. J. Biol. Chem. 281:10561-10566.
    • (2006) J. Biol. Chem , vol.281 , pp. 10561-10566
    • Tanner, D.R.1    Dewey, J.D.2    Miller, M.R.3    Buskirk, A.R.4
  • 35
    • 0035917812 scopus 로고    scopus 로고
    • Expanding the genetic code of Escherichia coli
    • Wang, L., A. Brock, B. Herberich, and P. G. Schultz. 2001. Expanding the genetic code of Escherichia coli. Science 292:498-500.
    • (2001) Science , vol.292 , pp. 498-500
    • Wang, L.1    Brock, A.2    Herberich, B.3    Schultz, P.G.4
  • 36
    • 67650656654 scopus 로고    scopus 로고
    • SmpB contributes to reading frame selection in the translation of transfer-messenger RNA
    • Watts, T., D. Cazier, D. Healey, and A. Buskirk. 2009. SmpB contributes to reading frame selection in the translation of transfer-messenger RNA. J. Mol. Biol. 391:275-281.
    • (2009) J. Mol. Biol , vol.391 , pp. 275-281
    • Watts, T.1    Cazier, D.2    Healey, D.3    Buskirk, A.4
  • 38
    • 28044462415 scopus 로고    scopus 로고
    • Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics
    • Yassin, A., K. Fredrick, and A. S. Mankin. 2005. Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics. Proc. Natl. Acad. Sci. U. S. A. 102:16620- 16625.
    • (2005) Proc. Natl. Acad. Sci. U. S. A , vol.102 , pp. 16620-16625
    • Yassin, A.1    Fredrick, K.2    Mankin, A.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.