-
1
-
-
0035985042
-
SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli
-
Abo, T., K. Ueda, T. Sunohara, K. Ogawa, and H. Aiba. 2002. SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli. Genes Cells 7:629-638.
-
(2002)
Genes Cells
, vol.7
, pp. 629-638
-
-
Abo, T.1
Ueda, K.2
Sunohara, T.3
Ogawa, K.4
Aiba, H.5
-
2
-
-
33644876507
-
The tmRDB and SRPDB resources
-
Andersen, E. S., M. A. Rosenblad, N. Larsen, J. C. Westergaard, J. Burks, I. K. Wower, J. Wower, J. Gorodkin, T. Samuelsson, and C. Zwieb. 2006. The tmRDB and SRPDB resources. Nucleic Acids Res. 34:D163-D168.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Andersen, E.S.1
Rosenblad, M.A.2
Larsen, N.3
Westergaard, J.C.4
Burks, J.5
Wower, I.K.6
Wower, J.7
Gorodkin, J.8
Samuelsson, T.9
Zwieb, C.10
-
3
-
-
0033515041
-
An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
-
Asai, T., D. Zaporojets, C. Squires, and C. L. Squires. 1999. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc. Natl. Acad. Sci. U. S. A. 96:1971-1976.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A
, vol.96
, pp. 1971-1976
-
-
Asai, T.1
Zaporojets, D.2
Squires, C.3
Squires, C.L.4
-
4
-
-
23044445236
-
Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression
-
Cruz-Vera, L. R., S. Rajagopal, C. Squires, and C. Yanofsky. 2005. Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression. Mol. Cell 19:333-343.
-
(2005)
Mol. Cell
, vol.19
, pp. 333-343
-
-
Cruz-Vera, L.R.1
Rajagopal, S.2
Squires, C.3
Yanofsky, C.4
-
5
-
-
18144409413
-
Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation
-
Cukras, A. R., and R. Green. 2005. Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation. J. Mol. Biol. 349:47-59.
-
(2005)
J. Mol. Biol
, vol.349
, pp. 47-59
-
-
Cukras, A.R.1
Green, R.2
-
6
-
-
0028302241
-
CCC.UGA: A new site of ribosomal frameshifting in Escherichia coli
-
de Smit, M. H., J. van Duin, P. H. van Knippenberg, and H. G. van Eijk. 1994. CCC.UGA: a new site of ribosomal frameshifting in Escherichia coli. Gene 143:43-47.
-
(1994)
Gene
, vol.143
, pp. 43-47
-
-
de Smit, M.H.1
van Duin, J.2
van Knippenberg, P.H.3
van Eijk, H.G.4
-
7
-
-
17844367581
-
Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit
-
Ghosh, S., and S. Joseph. 2005. Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit. RNA 11:657-667.
-
(2005)
RNA
, vol.11
, pp. 657-667
-
-
Ghosh, S.1
Joseph, S.2
-
8
-
-
0037072794
-
Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination
-
Hayes, C. S., B. Bose, and R. T. Sauer. 2002. Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination. J. Biol. Chem. 277:33825-33832.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 33825-33832
-
-
Hayes, C.S.1
Bose, B.2
Sauer, R.T.3
-
9
-
-
0037133638
-
Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
-
Hayes, C. S., B. Bose, and R. T. Sauer. 2002. Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99:3440-3445.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A
, vol.99
, pp. 3440-3445
-
-
Hayes, C.S.1
Bose, B.2
Sauer, R.T.3
-
10
-
-
0242361562
-
Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control
-
Hayes, C. S., and R. T. Sauer. 2003. Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control. Mol. Cell 12:903-911.
-
(2003)
Mol. Cell
, vol.12
, pp. 903-911
-
-
Hayes, C.S.1
Sauer, R.T.2
-
11
-
-
0034161440
-
Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability
-
Huang, C., M. C. Wolfgang, J. Withey, M. Koomey, and D. I. Friedman. 2000. Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability. EMBO J. 19:1098-1107.
-
(2000)
EMBO J
, vol.19
, pp. 1098-1107
-
-
Huang, C.1
Wolfgang, M.C.2
Withey, J.3
Koomey, M.4
Friedman, D.I.5
-
12
-
-
1842526451
-
Ribosome rescue by tmRNA requires truncated mRNAs
-
Ivanova, N., M. Y. Pavlov, B. Felden, and M. Ehrenberg. 2004. Ribosome rescue by tmRNA requires truncated mRNAs. J. Mol. Biol. 338:33-41.
-
(2004)
J. Mol. Biol
, vol.338
, pp. 33-41
-
-
Ivanova, N.1
Pavlov, M.Y.2
Felden, B.3
Ehrenberg, M.4
-
13
-
-
0029863608
-
Protein-protein interaction: A genetic selection for compensating mutations at the barnase-barstar interface
-
Jucovic, M., and R. W. Hartley. 1996. Protein-protein interaction: a genetic selection for compensating mutations at the barnase-barstar interface. Proc. Natl. Acad. Sci. U. S. A. 93:2343-2347.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A
, vol.93
, pp. 2343-2347
-
-
Jucovic, M.1
Hartley, R.W.2
-
14
-
-
0345465673
-
SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
-
Karzai, A. W., M. M. Susskind, and R. T. Sauer. 1999. SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J. 18:3793-3799.
-
(1999)
EMBO J
, vol.18
, pp. 3793-3799
-
-
Karzai, A.W.1
Susskind, M.M.2
Sauer, R.T.3
-
15
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
-
Keiler, K. C., P. R. Waller, and R. T. Sauer. 1996. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271:990-993.
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.2
Sauer, R.T.3
-
16
-
-
33845958586
-
The A-site finger in 23S rRNA acts as a functional attenuator for translocation
-
Komoda, T., N. S. Sato, S. S. Phelps, N. Namba, S. Joseph, and T. Suzuki. 2006. The A-site finger in 23S rRNA acts as a functional attenuator for translocation. J. Biol. Chem. 281:32303-32309.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 32303-32309
-
-
Komoda, T.1
Sato, N.S.2
Phelps, S.S.3
Namba, N.4
Joseph, S.5
Suzuki, T.6
-
17
-
-
33748582906
-
Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
-
Korostelev, A., S. Trakhanov, M. Laurberg, and H. F. Noller. 2006. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126:1065-1077.
-
(2006)
Cell
, vol.126
, pp. 1065-1077
-
-
Korostelev, A.1
Trakhanov, S.2
Laurberg, M.3
Noller, H.F.4
-
18
-
-
31044445793
-
Protein tagging at rare codons is caused by tmRNA action at the 3′ end of nonstop mRNA generated in response to ribosome stalling
-
Li, X., R. Hirano, H. Tagami, and H. Aiba. 2006. Protein tagging at rare codons is caused by tmRNA action at the 3′ end of nonstop mRNA generated in response to ribosome stalling. RNA 12:248-255.
-
(2006)
RNA
, vol.12
, pp. 248-255
-
-
Li, X.1
Hirano, R.2
Tagami, H.3
Aiba, H.4
-
19
-
-
33749565152
-
Mutations in the intersubunit bridge regions of 23 S rRNA
-
Liiv, A., and M. O'Connor. 2006. Mutations in the intersubunit bridge regions of 23 S rRNA. J. Biol. Chem. 281:29850-29862.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 29850-29862
-
-
Liiv, A.1
O'Connor, M.2
-
20
-
-
0019944172
-
Molecular structure of a new family of ribonucleases
-
Mauguen, Y., R. W. Hartley, E. J. Dodson, G. G. Dodson, G. Bricogne, C. Chothia, and A. Jack. 1982. Molecular structure of a new family of ribonucleases. Nature 297:162-164.
-
(1982)
Nature
, vol.297
, pp. 162-164
-
-
Mauguen, Y.1
Hartley, R.W.2
Dodson, E.J.3
Dodson, G.G.4
Bricogne, G.5
Chothia, C.6
Jack, A.7
-
21
-
-
0026723477
-
Effect of active site residues in barnase on activity and stability
-
Meiering, E. M., L. Serrano, and A. R. Fersht. 1992. Effect of active site residues in barnase on activity and stability. J. Mol. Biol. 225:585-589.
-
(1992)
J. Mol. Biol
, vol.225
, pp. 585-589
-
-
Meiering, E.M.1
Serrano, L.2
Fersht, A.R.3
-
22
-
-
48249108321
-
The role of upstream sequences in selecting the reading frame on tmRNA
-
Miller, M. R., D. W. Healey, S. G. Robison, J. D. Dewey, and A. R. Buskirk. 2008. The role of upstream sequences in selecting the reading frame on tmRNA. BMC Biol. 6:29.
-
(2008)
BMC Biol
, vol.6
, pp. 29
-
-
Miller, M.R.1
Healey, D.W.2
Robison, S.G.3
Dewey, J.D.4
Buskirk, A.R.5
-
23
-
-
26944431987
-
Ribosome rescue: TmRNA tagging activity and capacity in Escherichia coli
-
Moore, S. D., and R. T. Sauer. 2005. Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli. Mol. Microbiol. 58:456-466.
-
(2005)
Mol. Microbiol
, vol.58
, pp. 456-466
-
-
Moore, S.D.1
Sauer, R.T.2
-
24
-
-
34247103448
-
The tmRNA system for translational surveillance and ribosome rescue
-
Moore, S. D., and R. T. Sauer. 2007. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76:101-124.
-
(2007)
Annu. Rev. Biochem
, vol.76
, pp. 101-124
-
-
Moore, S.D.1
Sauer, R.T.2
-
25
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
Nakatogawa, H., and K. Ito. 2002. The ribosomal exit tunnel functions as a discriminating gate. Cell 108:629-636.
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
26
-
-
0036464560
-
Imbalance of tRNA(Pro) isoacceptors induces +1 frameshifting at near-cognate codons
-
O'Connor, M. 2002. Imbalance of tRNA(Pro) isoacceptors induces +1 frameshifting at near-cognate codons. Nucleic Acids Res. 30:759-765.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 759-765
-
-
O'Connor, M.1
-
27
-
-
0028846430
-
The ribosomal neighbourhood of the central fold of tRNA: Cross-links from position 47 of tRNA located at the A, P or E site
-
Osswald, M., T. Doring, and R. Brimacombe. 1995. The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site. Nucleic Acids Res. 23:4635-4641.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 4635-4641
-
-
Osswald, M.1
Doring, T.2
Brimacombe, R.3
-
28
-
-
17844375121
-
Hinge-like motions in RNA kink-turns: The role of the second a-minor motif and nominally unpaired bases
-
Razga, F., J. Koca, J. Sponer, and N. B. Leontis. 2005. Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases. Biophys. J. 88:3466-3485.
-
(2005)
Biophys. J
, vol.88
, pp. 3466-3485
-
-
Razga, F.1
Koca, J.2
Sponer, J.3
Leontis, N.B.4
-
29
-
-
0035958905
-
Identification of endogenous SsrAtagged proteins reveals tagging at positions corresponding to stop codons
-
Roche, E. D., and R. T. Sauer. 2001. Identification of endogenous SsrAtagged proteins reveals tagging at positions corresponding to stop codons. J. Biol. Chem. 276:28509-28515.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 28509-28515
-
-
Roche, E.D.1
Sauer, R.T.2
-
30
-
-
0033575660
-
SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
-
Roche, E. D., and R. T. Sauer. 1999. SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J. 18:4579-4589.
-
(1999)
EMBO J
, vol.18
, pp. 4579-4589
-
-
Roche, E.D.1
Sauer, R.T.2
-
31
-
-
25144497020
-
The conserved A-site finger of the 23S rRNA: Just one of the intersubunit bridges or a part of the allosteric communication pathway?
-
Sergiev, P. V., S. V. Kiparisov, D. E. Burakovsky, D. V. Lesnyak, A. A. Leonov, A. A. Bogdanov, and O. A. Dontsova. 2005. The conserved A-site finger of the 23S rRNA: just one of the intersubunit bridges or a part of the allosteric communication pathway? J. Mol. Biol. 353:116-123.
-
(2005)
J. Mol. Biol
, vol.353
, pp. 116-123
-
-
Sergiev, P.V.1
Kiparisov, S.V.2
Burakovsky, D.E.3
Lesnyak, D.V.4
Leonov, A.A.5
Bogdanov, A.A.6
Dontsova, O.A.7
-
32
-
-
0030887834
-
Arrangement of tRNAs in pre- and posttranslocational ribosomes revealed by electron cryomicroscopy
-
Stark, H., E. V. Orlova, J. Rinke-Appel, N. Junke, F. Mueller, M. Rodnina, W. Wintermeyer, R. Brimacombe, and M. van Heel. 1997. Arrangement of tRNAs in pre- and posttranslocational ribosomes revealed by electron cryomicroscopy. Cell 88:19-28.
-
(1997)
Cell
, vol.88
, pp. 19-28
-
-
Stark, H.1
Orlova, E.V.2
Rinke-Appel, J.3
Junke, N.4
Mueller, F.5
Rodnina, M.6
Wintermeyer, W.7
Brimacombe, R.8
van Heel, M.9
-
33
-
-
33744505213
-
Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1
-
Tanner, D. R., J. D. Dewey, M. R. Miller, and A. R. Buskirk. 2006. Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1. J. Biol. Chem. 281:10561-10566.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 10561-10566
-
-
Tanner, D.R.1
Dewey, J.D.2
Miller, M.R.3
Buskirk, A.R.4
-
34
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
Valle, M., A. Zavialov, J. Sengupta, U. Rawat, M. Ehrenberg, and J. Frank. 2003. Locking and unlocking of ribosomal motions. Cell 114:123-134.
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
Zavialov, A.2
Sengupta, J.3
Rawat, U.4
Ehrenberg, M.5
Frank, J.6
-
35
-
-
0035917812
-
Expanding the genetic code of Escherichia coli
-
Wang, L., A. Brock, B. Herberich, and P. G. Schultz. 2001. Expanding the genetic code of Escherichia coli. Science 292:498-500.
-
(2001)
Science
, vol.292
, pp. 498-500
-
-
Wang, L.1
Brock, A.2
Herberich, B.3
Schultz, P.G.4
-
36
-
-
67650656654
-
SmpB contributes to reading frame selection in the translation of transfer-messenger RNA
-
Watts, T., D. Cazier, D. Healey, and A. Buskirk. 2009. SmpB contributes to reading frame selection in the translation of transfer-messenger RNA. J. Mol. Biol. 391:275-281.
-
(2009)
J. Mol. Biol
, vol.391
, pp. 275-281
-
-
Watts, T.1
Cazier, D.2
Healey, D.3
Buskirk, A.4
-
37
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly, B. T., D. E. Brodersen, W. M. Clemons, Jr., R. J. Morgan-Warren, A. P. Carter, C. Vonrhein, T. Hartsch, and V. Ramakrishnan. 2000. Structure of the 30S ribosomal subunit. Nature 407:327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
38
-
-
28044462415
-
Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics
-
Yassin, A., K. Fredrick, and A. S. Mankin. 2005. Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics. Proc. Natl. Acad. Sci. U. S. A. 102:16620- 16625.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A
, vol.102
, pp. 16620-16625
-
-
Yassin, A.1
Fredrick, K.2
Mankin, A.S.3
-
39
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 A resolution
-
Yusupov, M. M., G. Z. Yusupova, A. Baucom, K. Lieberman, T. N. Earnest, J. H. Cate, and H. F. Noller. 2001. Crystal structure of the ribosome at 5.5 A resolution. Science 292:883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
|