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Volumn 29, Issue 22, 2010, Pages 3819-3825

Visualizing the transfer-messenger RNA as the ribosome resumes translation

Author keywords

SmpB; tmRNA; trans translation

Indexed keywords

MESSENGER RNA; TRANSFER MESSENGER RNA; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 78449274864     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2010.255     Document Type: Article
Times cited : (37)

References (44)
  • 3
    • 0001832403 scopus 로고
    • Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function
    • Chapman MS (1995) Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function. Acta Crystallogr A 51 : 69-80
    • (1995) Acta Crystallogr A , vol.51 , pp. 69-80
    • Chapman, M.S.1
  • 6
    • 39149091041 scopus 로고    scopus 로고
    • Preparation of macromo-lecular complexes for cryo-electron microscopy
    • Grassucci RA, Taylor DJ, Frank J (2007) Preparation of macromo-lecular complexes for cryo-electron microscopy. Nat Protoc 2: 3239-3246
    • (2007) Nat Protoc , vol.2 , pp. 3239-3246
    • Grassucci, R.A.1    Taylor, D.J.2    Frank, J.3
  • 7
    • 0041737720 scopus 로고    scopus 로고
    • Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB
    • Gutmann S, Haebel PW, Metzinger L, Sutter M, Felden B, Ban N (2003) Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB. Nature 424: 699-703
    • (2003) Nature , vol.424 , pp. 699-703
    • Gutmann, S.1    Haebel, P.W.2    Metzinger, L.3    Sutter, M.4    Felden, B.5    Ban, N.6
  • 9
    • 21744443970 scopus 로고    scopus 로고
    • TmRNA-induced release of messenger RNA from stalled ribosomes
    • Ivanova N, Pavlov MY, Ehrenberg M (2005) tmRNA-induced release of messenger RNA from stalled ribosomes. J Mol Biol 350: 897-905
    • (2005) J Mol Biol , vol.350 , pp. 897-905
    • Ivanova, N.1    Pavlov, M.Y.2    Ehrenberg, M.3
  • 11
    • 77955405123 scopus 로고    scopus 로고
    • Assemble: An interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels
    • Jossinet F, Ludwig TE, Westhof E (2010) Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels. Bioinformatics 26: 2057-2059
    • (2010) Bioinformatics , vol.26 , pp. 2057-2059
    • Jossinet, F.1    Ludwig, T.E.2    Westhof, E.3
  • 12
    • 25144458057 scopus 로고    scopus 로고
    • Sequence to structure (S2S): Display, manipulate and interconnect RNA data from sequence to structure
    • Jossinet F, Westhof E (2005) Sequence to structure (S2S): display, manipulate and interconnect RNA data from sequence to structure. Bioinformatics 21 : 3320-3321
    • (2005) Bioinformatics , vol.21 , pp. 3320-3321
    • Jossinet, F.1    Westhof, E.2
  • 13
    • 33750838456 scopus 로고    scopus 로고
    • Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome
    • Kaur S, Gillet R, Li W, Gursky R, Frank J (2006) Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. Proc Natl Acad Sci USA 103: 16484-16489
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 16484-16489
    • Kaur, S.1    Gillet, R.2    Li, W.3    Gursky, R.4    Frank, J.5
  • 14
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler KC, Waller PR, Sauer RT (1996a) Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271: 990-993
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.2    Sauer, R.T.3
  • 15
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler KC, Waller PRH, Sauer RT (1996b) Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271: 990-993
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.H.2    Sauer, R.T.3
  • 16
    • 34748881977 scopus 로고    scopus 로고
    • A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation
    • Konno T, Kurita D, Takada K, Muto A, Himeno H (2007) A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation. RNA 13: 1723-1731
    • (2007) RNA , vol.13 , pp. 1723-1731
    • Konno, T.1    Kurita, D.2    Takada, K.3    Muto, A.4    Himeno, H.5
  • 17
  • 18
    • 0034951396 scopus 로고    scopus 로고
    • Determinants on tmRNA for initiating efficient and precise trans-translation: Some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro
    • Lee S, Ishii M, Tadaki T, Muto A, Himeno H (2001) Determinants on tmRNA for initiating efficient and precise trans-translation: some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro. RNA 7: 999-1012
    • (2001) RNA , vol.7 , pp. 999-1012
    • Lee, S.1    Ishii, M.2    Tadaki, T.3    Muto, A.4    Himeno, H.5
  • 19
    • 15444370401 scopus 로고    scopus 로고
    • Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope
    • Lei J, Frank J (2005) Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope. J Struct Biol 150: 69-80
    • (2005) J Struct Biol , vol.150 , pp. 69-80
    • Lei, J.1    Frank, J.2
  • 20
    • 12544252576 scopus 로고    scopus 로고
    • Analysis of recognition of transfer-messenger RNA by the ribosomal decoding center
    • Lim VI, Garber MB (2005) Analysis of recognition of transfer-messenger RNA by the ribosomal decoding center. J Mol Biol 346: 395-398
    • (2005) J Mol Biol , vol.346 , pp. 395-398
    • Lim, V.I.1    Garber, M.B.2
  • 21
    • 13444266488 scopus 로고    scopus 로고
    • A simple and fast secondary structure prediction method using hidden neural networks
    • Lin K, Simossis VA, Taylor WR, Heringa J (2005) A simple and fast secondary structure prediction method using hidden neural networks. Bioinformatics 21 : 152-159
    • (2005) Bioinformatics , vol.21 , pp. 152-159
    • Lin, K.1    Simossis, V.A.2    Taylor, W.R.3    Heringa, J.4
  • 23
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin LJ, Bryson K, Jones DT (2000) The PSIPRED protein structure prediction server. Bioinformatics 16: 404-405
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 24
    • 50649123783 scopus 로고    scopus 로고
    • The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain
    • Metzinger L, Hallier M, Felden B (2008) The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain. RNA 14: 1761-1772
    • (2008) RNA , vol.14 , pp. 1761-1772
    • Metzinger, L.1    Hallier, M.2    Felden, B.3
  • 28
    • 0036568279 scopus 로고    scopus 로고
    • Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
    • Pollastri G, Przybylski D, Rost B, Baldi P (2002) Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins 47: 228-235
    • (2002) Proteins , vol.47 , pp. 228-235
    • Pollastri, G.1    Przybylski, D.2    Rost, B.3    Baldi, P.4
  • 29
    • 0347985836 scopus 로고    scopus 로고
    • Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: A case study
    • Rath BK, Frank J (2004) Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study. J Struct Biol 145: 84-90
    • (2004) J Struct Biol , vol.145 , pp. 84-90
    • Rath, B.K.1    Frank, J.2
  • 30
    • 0032840381 scopus 로고    scopus 로고
    • Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu
    • Rudinger-Thirion J, Giege R, Felden B (1999) Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu. RNA 5: 989-992
    • (1999) RNA , vol.5 , pp. 989-992
    • Rudinger-Thirion, J.1    Giege, R.2    Felden, B.3
  • 33
    • 58049204808 scopus 로고    scopus 로고
    • SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs
    • Shaikh TR, Gao H, Baxter WT, Asturias FJ, Boisset N, Leith A, Frank J (2008) SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc 3: 1941-1974
    • (2008) Nat Protoc , vol.3 , pp. 1941-1974
    • Shaikh, T.R.1    Gao, H.2    Baxter, W.T.3    Asturias, F.J.4    Boisset, N.5    Leith, A.6    Frank, J.7
  • 34
    • 42949089487 scopus 로고    scopus 로고
    • Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
    • Trabuco LG, Villa E, Mitra K, Frank J, Schulten K (2008) Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16: 673-683
    • (2008) Structure , vol.16 , pp. 673-683
    • Trabuco, L.G.1    Villa, E.2    Mitra, K.3    Frank, J.4    Schulten, K.5
  • 35
    • 1942533456 scopus 로고    scopus 로고
    • TRNA slippage at the tmRNA resume codon
    • Trimble MJ, Minnicus A, Williams KP (2004) tRNA slippage at the tmRNA resume codon. RNA 10: 805-812
    • (2004) RNA , vol.10 , pp. 805-812
    • Trimble, M.J.1    Minnicus, A.2    Williams, K.P.3
  • 36
    • 0028906813 scopus 로고
    • C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide
    • Tu GF, Reid GE, Zhang JG, Moritz RL, Simpson RJ (1995) C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide. J Biol Chem 270: 9322-9326
    • (1995) J Biol Chem , vol.270 , pp. 9322-9326
    • Tu, G.F.1    Reid, G.E.2    Zhang, J.G.3    Moritz, R.L.4    Simpson, R.J.5
  • 39
    • 67650656654 scopus 로고    scopus 로고
    • SmpB contributes to reading frame selection in the translation of transfer-messenger RNA
    • Watts T, Cazier D, Healey D, Buskirk A (2009) SmpB contributes to reading frame selection in the translation of transfer-messenger RNA. J Mol Biol 391: 275-281
    • (2009) J Mol Biol , vol.391 , pp. 275-281
    • Watts, T.1    Cazier, D.2    Healey, D.3    Buskirk, A.4
  • 40
    • 78449312624 scopus 로고    scopus 로고
    • The role of tmRNA nucleotides and the SmpB protein in setting the translational frame on tmRNA
    • Watts T, Healey D, Jones D, Buskirk A (2008) The role of tmRNA nucleotides and the SmpB protein in setting the translational frame on tmRNA. FASEB J 22: 224
    • (2008) FASEB J , vol.22 , pp. 224
    • Watts, T.1    Healey, D.2    Jones, D.3    Buskirk, A.4
  • 41
    • 75149143993 scopus 로고    scopus 로고
    • Accommodation of tmRNA-SmpB into stalled ribosomes: A cryo-EM study
    • Weis F, Bron P, Rolland JP, Thomas D, Felden B, Gillet R (2010) Accommodation of tmRNA-SmpB into stalled ribosomes: a cryo-EM study. RNA 16: 299-306
    • (2010) RNA , vol.16 , pp. 299-306
    • Weis, F.1    Bron, P.2    Rolland, J.P.3    Thomas, D.4    Felden, B.5    Gillet, R.6
  • 42
    • 0033215307 scopus 로고    scopus 로고
    • Resuming translation on tmRNA: A unique mode of determining a reading frame
    • Williams KP, Martindale KA, Bartel DP (1999) Resuming translation on tmRNA: a unique mode of determining a reading frame. EMBO J 18: 5423-5433
    • (1999) EMBO J , vol.18 , pp. 5423-5433
    • Williams, K.P.1    Martindale, K.A.2    Bartel, D.P.3
  • 43
    • 11144236530 scopus 로고    scopus 로고
    • Contributions of pseudoknots and protein SmpB to the structure and function of tmRNA in trans-translation
    • Wower IK, Zwieb C, Wower J (2004) Contributions of pseudoknots and protein SmpB to the structure and function of tmRNA in trans-translation. J Biol Chem 279: 54202-54209
    • (2004) J Biol Chem , vol.279 , pp. 54202-54209
    • Wower, I.K.1    Zwieb, C.2    Wower, J.3
  • 44
    • 17844398246 scopus 로고    scopus 로고
    • Transfer-messenger RNA unfolds as it transits the ribosome
    • Wower IK, Zwieb C, Wower J (2005) Transfer-messenger RNA unfolds as it transits the ribosome. RNA 11: 668-673
    • (2005) RNA , vol.11 , pp. 668-673
    • Wower, I.K.1    Zwieb, C.2    Wower, J.3


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