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Volumn 18, Issue 3, 2012, Pages 843-849

Problems with molecular mechanics implementations on the example of 4-benzoyl-1-(4-methyl-imidazol-5-yl)-carbonylthiosemicarbazide

Author keywords

1 Carbonylthiosemicarbazide; Amber; CHARMM; Conformational search; HyperChem; Molecular mechanics; OPLS

Indexed keywords

4 BENZOYL 1 (4 METHYL IMIDAZOL 5 YL)CARBONYLTHIOSEMICARBAZIDE; SEMICARBAZIDE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 84861335287     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-011-1117-1     Document Type: Article
Times cited : (13)

References (92)
  • 1
    • 0017100947 scopus 로고
    • Theoretical studies of enzymatic reactions: Dielectric electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
    • Warshel A, Levitt M (1976) Theoretical studies of enzymatic reactions: dielectric electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme. J Mol Biol 103:227-249
    • (1976) J Mol Biol , vol.103 , pp. 227-249
    • Warshel, A.1    Levitt, M.2
  • 2
    • 79951798129 scopus 로고    scopus 로고
    • Is conformational sampling of druglike molecules a solved problem?
    • Chen IJ, Follope N (2011) Is conformational sampling of druglike molecules a solved problem? Drug Develop Res 72:85-94
    • (2011) Drug Develop Res , vol.72 , pp. 85-94
    • Chen, I.J.1    Follope, N.2
  • 7
    • 40949105165 scopus 로고    scopus 로고
    • Structure-activity relationship analysis of N-benzoylpyrazoles for elastase inhibitory activity: A simplified approach using atom pair descriptors
    • DOI 10.1016/j.bmc.2008.01.014, PII S0968089608000151
    • Khlebnikov AI, Schepetkin IA, Quinn MT (2008) Structure- activity relationship analysis of N-benzoylpyrazoles for elastase inhibitory activity: a simplified approach using atom pair descriptors. Bioorg Med Chem 16:2791-2802 (Pubitemid 351418226)
    • (2008) Bioorganic and Medicinal Chemistry , vol.16 , Issue.6 , pp. 2791-2802
    • Khlebnikov, A.I.1    Schepetkin, I.A.2    Quinn, M.T.3
  • 9
    • 60049101432 scopus 로고    scopus 로고
    • 13-Methyl-substituted des- C,D analogs of (20S)-1α,25-dihydroxy-2- methylene-19-norvitamin D3 (2MD): Synthesis and biological evaluation
    • Plonska-Ocypa K, Sicinski RR, Plum LA, Grzywacz P, Frelek J, Clagett-Dame M, DeLuca HF (2009) 13-Methyl-substituted des- C,D analogs of (20S)-1α,25-dihydroxy-2-methylene-19-norvitamin D3 (2MD): synthesis and biological evaluation. Bioorg Med Chem 17:1747-1763
    • (2009) Bioorg Med Chem , vol.17 , pp. 1747-1763
    • Plonska-Ocypa, K.1    Sicinski, R.R.2    Plum, L.A.3    Grzywacz, P.4    Frelek, J.5    Clagett-Dame, M.6    Deluca, H.F.7
  • 10
    • 21744457929 scopus 로고    scopus 로고
    • Lewis acid-promoted transformation of 2-alkoxypyridines into 2-aminopyridines and their antibacterial activity. Part 2: Remarkably facile C-N bond formation
    • DOI 10.1016/j.bmc.2005.05.027, PII S0968089605004530
    • Abdel-Aziz AA-M, El-Subbagh HI, Kunieda T (2005) Lewis acid-promoted transformation of 2-alkoxypyridines into 2- aminopyridines and their antibacterial activity. Part 2: remarkably facile C-N bond formation. Bioorg Med Chem 13:4929-4935 (Pubitemid 40943517)
    • (2005) Bioorganic and Medicinal Chemistry , vol.13 , Issue.16 , pp. 4929-4935
    • Abdel-Aziz, A.A.-M.1    El-Subbagh, H.I.2    Kunieda, T.3
  • 14
    • 84980469739 scopus 로고    scopus 로고
    • Solvatochromism, DNA binding, antitumor activity and molecular modeling study of mixed-ligand copper(II) complexes containing the bulky ligand: Bis[N-(p-tolyl)imino]acenaphthene
    • DOI 10.1016/j.ejmech.2007.02.014, PII S0223523407001055
    • El-Ayaan U, Abdel-Aziz AA-M, Al-Shihry S (2007) Solvatochromism, DNA binding, antitumor activity and molecular modeling study of mixed-ligand copper(II) complexes containing the bulky ligand: bis[N-(p-tolyl)imino] acenaphthene. Eur J Med Chem 42:1325-1333 (Pubitemid 350137570)
    • (2007) European Journal of Medicinal Chemistry , vol.42 , Issue.11-12 , pp. 1325-1333
    • El-Ayaan, U.1    Abdel-Aziz, A.A.-M.2    Al-Shihry, S.3
  • 16
    • 44449111719 scopus 로고    scopus 로고
    • Exploration of physicochemical properties and molecular modelling studies of 2-sulfonyl-phenyl-3-phenyl-indole analogs as cyclooxygenase-2 inhibitors
    • DOI 10.1016/j.ejmech.2007.06.022, PII S0223523407002711
    • Gupta AK, Gupta RA, Soni LK, Kaskhedikar SG (2008) Exploration of physicochemical properties and molecular modeling studies of 2-sulfonyl-phenyl-3-phenyl-indole analogs as cyclooxygenase-2 inhibitors. Eur J Med Chem 43:1297-1303 (Pubitemid 351753032)
    • (2008) European Journal of Medicinal Chemistry , vol.43 , Issue.6 , pp. 1297-1303
    • Gupta, A.K.1    Gupta, R.A.2    Soni, L.K.3    Kaskhedikar, S.G.4
  • 17
    • 34248220479 scopus 로고    scopus 로고
    • Novel and versatile methodology for synthesis of cyclic imides and evaluation of their cytotoxic, DNA binding, apoptotic inducing activities and molecular modeling study
    • Abdel-Aziz AA-M (2007) Novel and versatile methodology for synthesis of cyclic imides and evaluation of their cytotoxic, DNA binding, apoptotic inducing activities and molecular modeling study. Eur J Med Chem 42:614-626
    • (2007) Eur J Med Chem , vol.42 , pp. 614-626
    • Aa-M, A.1
  • 18
    • 77949489371 scopus 로고    scopus 로고
    • Synthesis and pharmacological evaluation of novel fused thiophene derivatives as 5-HT2A receptor antagonists: Molecular modeling study
    • El-Kerdawy MM, El-Bendary ER, Abdel-Aziz AA-M, El-wasseef DR, Abd El-Aziz NI (2010) Synthesis and pharmacological evaluation of novel fused thiophene derivatives as 5-HT2A receptor antagonists: molecular modeling study. Eur J Med Chem 45:1805-1820
    • (2010) Eur J Med Chem , vol.45 , pp. 1805-1820
    • El-Kerdawy, M.M.1    El-Bendary, E.R.2    Aa-M, A.3    El-Wasseef, D.R.4    Abd El-Aziz, N.I.5
  • 19
    • 78650516922 scopus 로고    scopus 로고
    • Isoxazolidinyl polycyclic aromatic hydrocarbons as DNAintercalating antitumor agents
    • Rescifina A, Chiacchio U, Corsaro A, Piperno A, Romeo R (2011) Isoxazolidinyl polycyclic aromatic hydrocarbons as DNAintercalating antitumor agents. Eur J Med Chem 46:129-136
    • (2011) Eur J Med Chem , vol.46 , pp. 129-136
    • Rescifina, A.1    Chiacchio, U.2    Corsaro, A.3    Piperno, A.4    Romeo, R.5
  • 21
    • 33644556198 scopus 로고    scopus 로고
    • Conformational analysis of the N-terminal sequence Met1-Val60 of the tyrosine hydroxylase
    • Alieva IN, Mustafayeva NN, Gojayev NM (2006) Conformational analysis of the N-terminal sequence Met1-Val60 of the tyrosine hydroxylase. J Mol Struct 785:76-84
    • (2006) J Mol Struct , vol.785 , pp. 76-84
    • Alieva, I.N.1    Mustafayeva, N.N.2    Gojayev, N.M.3
  • 22
    • 36148961216 scopus 로고    scopus 로고
    • Sc(III) porphyrins. The molecular structure of two Sc(III) porphyrins and a re-evaluation of the parameters for the molecular mechanics modelling of Sc(III) porphyrins
    • DOI 10.1016/j.molstruc.2007.02.018, PII S0022286007001792
    • de Sousa AS, Fernandes MA, Nxumalo W, Balderson JL, Jeftič T, Cukrowski I, Marques HM (2008) Sc(III) porphyrins. The molecular structure of two Sc(III) porphyrins and a re-evaluation of the parameters for the molecular mechanics modelling of Sc (III) porphyrins. J Mol Struct 872:47-55 (Pubitemid 350103711)
    • (2008) Journal of Molecular Structure , vol.872 , Issue.1 , pp. 47-55
    • De Sousa, A.S.1    Fernandes, M.A.2    Nxumalo, W.3    Balderson, J.L.4    Jeftic, T.5    Cukrowski, I.6    Marques, H.M.7
  • 23
    • 61849139036 scopus 로고    scopus 로고
    • Synthesis, spectral, thermal and theoretical studies of Cu(II) complexes with 3-[4'- dimethylaminophenyl]-1-(2-pyridyl)prop-2-en-1-one (DMAPP)
    • Gaber M, El-Daly SA, El-Sayed YSY (2009) Synthesis, spectral, thermal and theoretical studies of Cu(II) complexes with 3-[4'- dimethylaminophenyl]-1-(2- pyridyl)prop-2-en-1-one (DMAPP). J Mol Struct 922:51-57
    • (2009) J Mol Struct , vol.922 , pp. 51-57
    • Gaber, M.1    El-Daly, S.A.2    El-Sayed, Y.S.Y.3
  • 24
    • 70349121662 scopus 로고    scopus 로고
    • Synthesis and structural characterization of dicopper(II) and dipalladium(II) complexes of 1,1,2,2-tetrakis(carboxamido-2- methylpyridyl)ethane
    • Mautner FA, Taylor ER, Rozas DM, Massoud SS (2009) Synthesis and structural characterization of dicopper(II) and dipalladium(II) complexes of 1,1,2,2-tetrakis(carboxamido-2- methylpyridyl)ethane. J Mol Struct 936:250-256
    • (2009) J Mol Struct , vol.936 , pp. 250-256
    • Mautner, F.A.1    Taylor, E.R.2    Rozas, D.M.3    Massoud, S.S.4
  • 25
    • 67649866305 scopus 로고    scopus 로고
    • Role of the conserved water molecules in the binding of inhibitor to IMPDH-II (human): A study on the water mimic inhibitor design
    • Bairagya HR, Mukhopadhyay BP, Bhattacharya S (2009) Role of the conserved water molecules in the binding of inhibitor to IMPDH-II (human): a study on the water mimic inhibitor design. J Mol Struct THEOCHEM 908:31-39
    • (2009) J Mol Struct THEOCHEM , vol.908 , pp. 31-39
    • Bairagya, H.R.1    Mukhopadhyay, B.P.2    Bhattacharya, S.3
  • 26
    • 77954955271 scopus 로고    scopus 로고
    • Macrodipoles of potassium and chloride ion channels as revealed by electronic structure calculations
    • Pichierri F (2010) Macrodipoles of potassium and chloride ion channels as revealed by electronic structure calculations. J Mol Struct THEOCHEM 950:79-82
    • (2010) J Mol Struct THEOCHEM , vol.950 , pp. 79-82
    • Pichierri, F.1
  • 28
    • 34848922723 scopus 로고    scopus 로고
    • Conformation of oleuropein, the major bioactive compound of Olea europea
    • Gikas E, Bazoti FN, Tsarbopoulos A (2007) Conformation of oleuropein, the major bioactive compound of Olea europea. J Mol Struct THEOCHEM 821:125-132
    • (2007) J Mol Struct THEOCHEM , vol.821 , pp. 125-132
    • Gikas, E.1    Bazoti, F.N.2    Tsarbopoulos, A.3
  • 29
    • 34447498860 scopus 로고    scopus 로고
    • Modulating the activity of avian pancreatic lipases by an alkyl chain reacting with an accessible sulfhydryl group
    • DOI 10.1016/j.bbrc.2007.06.115, PII S0006291X07013770
    • Fendri A, Frikha F, Miled N, Bacha AB, Gargouri Y (2007) Modulating the activity of avian pancreatic lipases by an alkyl chain reacting with an accessible sulfhydryl group. Biochem Biophys Res Commun 360:765-771 (Pubitemid 47082436)
    • (2007) Biochemical and Biophysical Research Communications , vol.360 , Issue.4 , pp. 765-771
    • Fendri, A.1    Frikha, F.2    Miled, N.3    Ben Bacha, A.4    Gargouri, Y.5
  • 31
    • 17044434658 scopus 로고    scopus 로고
    • Binding affinity difference induced by the stereochemistry of the sulfoxide bridge of the cyclic peptide inhibitors of Grb2-SH2 domain: NMR studies for the structural origin
    • Shi YH, Song YL, Lin DH, Tan J, Roller PP, Li Q, Long YQ, Song GQ (2005) Binding affinity difference induced by the stereochemistry of the sulfoxide bridge of the cyclic peptide inhibitors of Grb2-SH2 domain: NMR studies for the structural origin. Biochem Biophys Res Commun 330:1254-1261
    • (2005) Biochem Biophys Res Commun , vol.330 , pp. 1254-1261
    • Shi, Y.H.1    Song, Y.L.2    Lin, D.H.3    Tan, J.4    Roller, P.P.5    Li, Q.6    Long, Y.Q.7    Song, G.Q.8
  • 35
    • 68949204870 scopus 로고    scopus 로고
    • Copper and nickel binding in multi-histidinic peptide fragments
    • Zoroddu MA, Medici S, Peana M (2009) Copper and nickel binding in multi-histidinic peptide fragments. J Inorg Biochem 103:1214-1220
    • (2009) J Inorg Biochem , vol.103 , pp. 1214-1220
    • Zoroddu, M.A.1    Medici, S.2    Peana, M.3
  • 37
  • 38
    • 37049039020 scopus 로고    scopus 로고
    • Comparative studies of coordination properties of puromycin and puromycin aminonucleoside towards copper(II) ions
    • DOI 10.1016/j.jinorgbio.2007.06.031, PII S0162013407001614
    • Mucha A, Bal W, Jezowska-Bojczuk M (2008) Comparative studies of coordination properties of puromycin and puromycin aminonucleoside towards copper(II) ions. J Inorg Biochem 102:46-52 (Pubitemid 350245402)
    • (2008) Journal of Inorganic Biochemistry , vol.102 , Issue.1 , pp. 46-52
    • Mucha, A.1    Bal, W.2    Jezowska-Bojczuk, M.3
  • 40
    • 78149499227 scopus 로고    scopus 로고
    • Effect of cyclodextrins on the solubility and stability of candesartan cilexetil in solution and solid state
    • Al Omari AA, Al Omari MM, Badwan AA, Al-Sou'od KA (2011) Effect of cyclodextrins on the solubility and stability of candesartan cilexetil in solution and solid state. J Pharm Biomed Anal 54:503-509
    • (2011) J Pharm Biomed Anal , vol.54 , pp. 503-509
    • Al Omari, A.A.1    Al Omari, M.M.2    Badwan, A.A.3    Al-Sou'Od, K.A.4
  • 42
    • 77950460663 scopus 로고    scopus 로고
    • Cyclodextrins as carriers for kavalactones in aqueous media: Spectroscopic characterization of (S)-7,8-dihydrokavain and β-cyclodextrin inclusion complex
    • Pescitelli G, Bilia AR, Bergonzi MC, Vincieri FF, Di Bari L (2010) Cyclodextrins as carriers for kavalactones in aqueous media: Spectroscopic characterization of (S)-7,8-dihydrokavain and β-cyclodextrin inclusion complex. J Pharm Biomed Anal 52:479-483
    • (2010) J Pharm Biomed Anal , vol.52 , pp. 479-483
    • Pescitelli, G.1    Bilia, A.R.2    Bergonzi, M.C.3    Vincieri, F.F.4    Di Bari, L.5
  • 43
    • 34347209728 scopus 로고    scopus 로고
    • A facile synthesis and highly atom economic 1,3-dipolar cycloaddition of hexahydropyrido[3,4-c][1,5]benzothiazepines with nitrile oxide: stereoselective formation of hexahydro[1,2,4]oxadiazolo[5,4-d]pyrido[3,4-c][1,5]benzothiazepines
    • DOI 10.1016/j.tet.2007.05.097, PII S0040402007009659
    • Kumar RR, Perumal S (2007) A facile synthesis and highly atom economic 1,3-dipolar cycloaddition of hexahydropyrido[3,4-c] [1,5]benzothiazepines with nitrile oxide: stereoselective formation of hexahydro-[1,2,4]oxadiazolo[5,4-d] pyrido[3,4-c][1,5]benzothiazepines. Tetrahedron 63:7850-7857 (Pubitemid 47001980)
    • (2007) Tetrahedron , vol.63 , Issue.33 , pp. 7850-7857
    • Kumar, R.R.1    Perumal, S.2
  • 44
    • 27744536066 scopus 로고    scopus 로고
    • New acyclic receptors containing pyridazine units. The influence of π-stacking on the selective transport of lipophilic phenethylamines
    • DOI 10.1016/j.tet.2005.09.069, PII S0040402005016613
    • Campayo L, Calzado F, Cano MC, Yunta MJR, Pardo M, Navarro P, Jimeno ML, Gómez-Contreras F, Sanz AM (2005) New acyclic receptors containing pyridazine units. The influence of π-stacking on the selective transport of lipophilic phenethylamines. Tetrahedron 61:11965-11975 (Pubitemid 41635252)
    • (2005) Tetrahedron , vol.61 , Issue.50 , pp. 11965-11975
    • Campayo, L.1    Calzado, F.2    Cano, M.C.3    Yunta, M.J.R.4    Pardo, M.5    Navarro, P.6    Jimeno, M.L.7    Gomez-Contreras, F.8    Sanz, A.M.9
  • 46
    • 34247165783 scopus 로고    scopus 로고
    • 5-phosphazenes
    • DOI 10.1016/j.tetlet.2007.03.087, PII S0040403907005485
    • Alajarín M, López-Leonardo C, Berná J, Sánchez-Andrada P (2007) Center-to-propeller and propeller-to-propeller stereocontrol in a series of macrobicyclic tri-λ5-phosphazenes. Tetrahedron Lett 48:3583-3586 (Pubitemid 46591968)
    • (2007) Tetrahedron Letters , vol.48 , Issue.20 , pp. 3583-3586
    • Alajarin, M.1    Lopez-Leonardo, C.2    Berna, J.3    Sanchez-Andrada, P.4
  • 47
    • 22744441951 scopus 로고    scopus 로고
    • Apical uptake and transepithelial transport of sphingosine monomers through intact human intestinal epithelial cells: Physicochemical and molecular modeling studies
    • DOI 10.1016/j.abb.2005.06.001, PII S000398610500233X
    • Garmy N, Taïeb N, Yahi N, Fantini J (2005) Apical uptake and transepithelial transport of sphingosine monomers through intact human intestinal epithelial cells: physicochemical and molecular modeling studies. Arch Biochem Biophys 440:91-100 (Pubitemid 41033348)
    • (2005) Archives of Biochemistry and Biophysics , vol.440 , Issue.1 , pp. 91-100
    • Garmy, N.1    Taieb, N.2    Yahi, N.3    Fantini, J.4
  • 48
    • 33847674077 scopus 로고    scopus 로고
    • Pentalenolactone biosynthesis: Molecular cloning and assignment of biochemical function to PtlF, a short-chain dehydrogenase from Streptomyces avermitilis, and identification of a new biosynthetic intermediate
    • DOI 10.1016/j.abb.2006.11.016, PII S0003986106004553
    • You Z, Omura S, Ikeda H, Cane DE (2007) Pentalenolactone biosynthesis: molecular cloning and assignment of biochemical function to PtlF, a short-chain dehydrogenase from Streptomyces avermitilis, and identification of a new biosynthetic intermediate. Arch Biochem Biophys 459:233-240 (Pubitemid 46367843)
    • (2007) Archives of Biochemistry and Biophysics , vol.459 , Issue.2 , pp. 233-240
    • You, Z.1    Omura, S.2    Ikeda, H.3    Cane, D.E.4
  • 49
  • 52
    • 11144313647 scopus 로고    scopus 로고
    • The effect of overhanging nucleotides on fluorescence properties of hybridising oligonucleotides labelled with Alexa-488 and FAM fluorophores
    • DOI 10.1016/j.bpc.2004.09.012, PII S0301462204002509
    • Noble JE, Wang L, Cole KD, Gaigalas AK (2005) The effect of overhanging nucleotides on fluorescence properties of hybridising oligonucleotides labelled with Alexa-488 and FAM fluorophores. Biophys Chem 113:255-263 (Pubitemid 40037806)
    • (2005) Biophysical Chemistry , vol.113 , Issue.3 , pp. 255-263
    • Noble, J.E.1    Wang, L.2    Cole, K.D.3    Gaigalas, A.K.4
  • 53
    • 24644480725 scopus 로고    scopus 로고
    • Complexation of ketoconazole by native and modified cyclodextrins
    • DOI 10.1007/s10847-005-2020-0
    • Taraszewska J, Koźbiał M (2005) Complexation of Ketoconazole by native and modified cyclodextrins. J Incl Phenom Macro 53:155-161 (Pubitemid 41279648)
    • (2005) Journal of Inclusion Phenomena , vol.53 , Issue.3 , pp. 155-161
    • Taraszewska, J.1    Kozbial, M.2
  • 54
    • 65549163894 scopus 로고    scopus 로고
    • Aminoglycoside antibiotics: A-site specific binding to 16S
    • Baker ES, Dupuis NF, Bowers MT (2009) Aminoglycoside antibiotics: A-site specific binding to 16S. Int J Mass Spectrom 283:105-111
    • (2009) Int J Mass Spectrom , vol.283 , pp. 105-111
    • Baker, E.S.1    Dupuis, N.F.2    Bowers, M.T.3
  • 55
    • 33745060142 scopus 로고    scopus 로고
    • Design and development of liposomes incorporating a bioactive labdane-type diterpene. In vitro growth inhibiting and cytotoxic activity against human cancer cell lines
    • DOI 10.1016/j.biopha.2006.03.007, PII S0753332206000552
    • Matsingou Ch, Dimas K, Demetzos C (2006) Design and development of liposomes incorporating a bioactive labdane-type diterpene. In vitro growth inhibiting and cytotoxic activity against human cancer cell lines. Biomed Pharmacother 60:191-199 (Pubitemid 43884974)
    • (2006) Biomedicine and Pharmacotherapy , vol.60 , Issue.4 , pp. 191-199
    • Matsingou, C.1    Dimas, K.2    Demetzos, C.3
  • 56
    • 33847655651 scopus 로고    scopus 로고
    • Hydration energy of the 1,4-bonds of chitosan and their breakdown by ultrasonic treatment
    • DOI 10.1016/j.carbpol.2006.11.004, PII S0144861706005546
    • Liu H, Du Y-M, Kennedy JF (2007) Hydration energy of the 1,4- bonds of chitosan and their breakdown by ultrasonic treatment. Carbohyd Polym 68:598-600 (Pubitemid 46365944)
    • (2007) Carbohydrate Polymers , vol.68 , Issue.3 , pp. 598-600
    • Liu, H.1    Du, Y.-M.2    Kennedy, J.F.3
  • 57
    • 33745097261 scopus 로고    scopus 로고
    • Encapsulation of 3-hydroxyflavone and fisetin in β-cyclodextrins: Excited state proton transfer fluorescence and molecular mechanics studies
    • DOI 10.1016/j.cplett.2006.05.006, PII S0009261406006075
    • Banerjee A, Sengupta PK (2006) Encapsulation of 3- hydroxyflavone and fisetin in b-cyclodextrins: excited state proton transfer fluorescence and molecular mechanics studies. Chem Phys Lett 424:379-386 (Pubitemid 43880359)
    • (2006) Chemical Physics Letters , vol.424 , Issue.4-6 , pp. 379-386
    • Banerjee, A.1    Sengupta, P.K.2
  • 58
    • 34547697003 scopus 로고    scopus 로고
    • Synthesis, characterization and biological activity of complexes of 2- hydroxy-3,5-dimethylacetophenoneoxime (HDMAOX) with copper( II), cobalt(II), nickel(II) and palladium(II)
    • Singh BK, Jetley UK, Sharma RK, Garg BS (2007) Synthesis, characterization and biological activity of complexes of 2- hydroxy-3,5- dimethylacetophenoneoxime (HDMAOX) with copper( II), cobalt(II), nickel(II) and palladium(II). Spectrochim Acta A 68:63-73
    • (2007) Spectrochim Acta A , vol.68 , pp. 63-73
    • Singh, B.K.1    Jetley, U.K.2    Sharma, R.K.3    Garg, B.S.4
  • 59
    • 27744592173 scopus 로고    scopus 로고
    • Optimization of polyurethane membranes: Morphology and structure studies
    • DOI 10.1016/j.memsci.2005.04.054, PII S0376738805004278
    • Melnig V, Apostu MO, Tura V, Ciobanu C (2005) Optimization of polyurethane membranes. Morphology and structure studies. J Membrane Sci 267:58-67 (Pubitemid 41613682)
    • (2005) Journal of Membrane Science , vol.267 , Issue.1-2 , pp. 58-67
    • Melnig, V.1    Apostu, M.O.2    Tura, V.3    Ciobanu, C.4
  • 60
    • 34547838115 scopus 로고    scopus 로고
    • Synthesis, characterization and interaction with DNA of mononuclear metal complexes with oxolinic acid
    • TarushiA CP, Psomas G (2007) Synthesis, characterization and interaction with DNA of mononuclear metal complexes with oxolinic acid. Polyhedron 26:3963-3972
    • (2007) Polyhedron , vol.26 , pp. 3963-3972
    • Tarushi, A.C.P.1    Psomas, G.2
  • 62
    • 34247402221 scopus 로고    scopus 로고
    • The action of the bacterial toxin, microcin B17, on DNA gyrase
    • DOI 10.1016/j.biochi.2006.12.005, PII S030090840600321X, DNA Topology DNA, more than just a ladder: A tribute to Michel Duguet
    • Parks WM, Bottrill AR, Pierrat OA, Durrant MC, Maxwell A (2007) The action of the bacterial toxin, microcin B17, on DNA gyrase. Biochimie 89:500-507 (Pubitemid 46634700)
    • (2007) Biochimie , vol.89 , Issue.4 , pp. 500-507
    • Parks, W.M.1    Bottrill, A.R.2    Pierrat, O.A.3    Durrant, M.C.4    Maxwell, A.5
  • 63
    • 77955267949 scopus 로고    scopus 로고
    • Theoretical approach in the study of the inclusion processes of sulconazole with β- Cyclodextrin
    • Fatiha M, Khatmi DE, Largate L (2010) Theoretical approach in the study of the inclusion processes of sulconazole with β- cyclodextrin. J Mol Liq 154:1-5
    • (2010) J Mol Liq , vol.154 , pp. 1-5
    • Fatiha, M.1    Khatmi, D.E.2    Largate, L.3
  • 64
    • 33745495833 scopus 로고    scopus 로고
    • Stability of the guanine-cytosine radical cation in DNA base pairs triplets
    • Hutter MC (2006) Stability of the guanine-cytosine radical cation in DNA base pairs triplets. Chem Phys 326:240-245
    • (2006) Chem Phys , vol.326 , pp. 240-245
    • Hutter, M.C.1
  • 65
    • 33845419542 scopus 로고    scopus 로고
    • Evaluation of chromatographic descriptors for the prediction of gastro-intestinal absorption of drugs
    • DOI 10.1016/j.chroma.2006.10.068, PII S0021967306020395
    • Deconinck E, Ates H, Callebaut N, Van Gyseghem E, Heyden YV (2007) Evaluation of chromatographic descriptors for the prediction of gastro-intestinal absorption of drugs. J Chromatogr A 1138:190-202 (Pubitemid 44908360)
    • (2007) Journal of Chromatography A , vol.1138 , Issue.1-2 , pp. 190-202
    • Deconinck, E.1    Ates, H.2    Callebaut, N.3    Van Gyseghem, E.4    Vander Heyden, Y.5
  • 66
    • 33644935398 scopus 로고    scopus 로고
    • The importance of outlier detection and training set selection for reliable environmental QSAR predictions
    • Furusjö E, Svenson A, Rahmberg M, Andersson M (2006) The importance of outlier detection and training set selection for reliable environmental QSAR predictions. Chemosphere 63:99-108
    • (2006) Chemosphere , vol.63 , pp. 99-108
    • Furusjö, E.1    Svenson, A.2    Rahmberg, M.3    Andersson, M.4
  • 67
    • 38849090006 scopus 로고    scopus 로고
    • Sulfonamide-1,2,4-triazole derivatives as antifungal and antibacterial agents: Synthesis, biological evaluation, lipophilicity, and conformational studies
    • DOI 10.1016/j.bmc.2007.10.082, PII S0968089607009509
    • Ezabadi IR, Camoutsis C, Zoumpoulakis P, Geronikaki A, Soković M, Glamoćilija J, Ćirić A (2008) Sulfonamide-1,2,4- triazole derivatives as antifungal and antibacterial agents: synthesis, biological evaluation, lipophilicity, and conformational studies. Bioorg Med Chem 16:1150-1161 (Pubitemid 351193036)
    • (2008) Bioorganic and Medicinal Chemistry , vol.16 , Issue.3 , pp. 1150-1161
    • Ezabadi, I.R.1    Camoutsis, C.2    Zoumpoulakis, P.3    Geronikaki, A.4    Sokovic, M.5    Glamocilija, J.6    Ciric, A.7
  • 68
    • 42149101677 scopus 로고    scopus 로고
    • Synthesis and antioxidant properties of novel N-methyl-1,3,4-thiadiazol- 2-amine and 4-methyl-2H-1,2,4-triazole-3(4H)-thione derivatives of benzimidazole class
    • DOI 10.1016/j.bmc.2008.02.077, PII S0968089608001995
    • Kuş C, Ayhan-Kilcigil G, Özbey S, Kaynak FB, Kaya M, Çoban T, Can-Eke B (2008) Synthesis and antioxidant properties of novel N-methyl-1,3,4-thiadiazol-2-amine and 4-methyl-2 H-1,2,4- triazole-3(4H)-thione derivatives of benzimidazole class. Bioorg Med Chem 16:4294-4303 (Pubitemid 351539047)
    • (2008) Bioorganic and Medicinal Chemistry , vol.16 , Issue.8 , pp. 4294-4303
    • Kus, C.1    Ayhan-Kilcigil, G.2    Ozbey, S.3    Kaynak, F.B.4    Kaya, M.5    Coban, T.6    Can-Eke, B.7
  • 70
    • 33847358707 scopus 로고    scopus 로고
    • Synthesis, structure elucidation, and biological evaluation of some fused and/or pendant thiophene, pyrazole, imidazole, thiazole, triazole, triazine, and coumarin systems based on cyanoacetic 2- [(benzoylamino)thioxomethyl] hydrazide
    • Shams HZ, Mohareb RM, Helal MH, Mahmoud AE (2007) Synthesis, structure elucidation, and biological evaluation of some fused and/or pendant thiophene, pyrazole, imidazole, thiazole, triazole, triazine, and coumarin systems based on cyanoacetic 2- [(benzoylamino)thioxomethyl] hydrazide. Phosphorus Sulfur Silicon Relat Elem 182:237-263
    • (2007) Phosphorus Sulfur Silicon Relat Elem , vol.182 , pp. 237-263
    • Shams, H.Z.1    Mohareb, R.M.2    Helal, M.H.3    Mahmoud, A.E.4
  • 72
    • 38549113063 scopus 로고    scopus 로고
    • HyperCube Inc. HyperCube Inc., Gainsville
    • HyperCube Inc. (2007) HyperChem 8.0.3. HyperCube Inc., Gainsville
    • (2007) HyperChem 8.0.3
  • 75
    • 33645941402 scopus 로고
    • The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
    • Jorgensen WL, Tirado-Rives J (1988) The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. J Am Chem Soc 110:1657-1666
    • (1988) J Am Chem Soc , vol.110 , pp. 1657-1666
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 77
    • 33646464890 scopus 로고    scopus 로고
    • Design of density functionals by combining the method of constraint satisfaction with parametrization for thermochemistry, thermochemical kinetics, and noncovalent interactions
    • Zhao Y, Schultz NE, Truhlar DG (2006) Design of density functionals by combining the method of constraint satisfaction with parametrization for thermochemistry, thermochemical kinetics, and noncovalent interactions. J Chem Theor Comput 2:364-382
    • (2006) J Chem Theor Comput , vol.2 , pp. 364-382
    • Zhao, Y.1    Schultz, N.E.2    Truhlar, D.G.3
  • 78
    • 40549127108 scopus 로고    scopus 로고
    • Density functionals with broad applicability in chemistry
    • Zhao Y, Truhlar DG (2008) Density functionals with broad applicability in chemistry. Acc Chem Res 41:157-167
    • (2008) Acc Chem Res , vol.41 , pp. 157-167
    • Zhao, Y.1    Truhlar, D.G.2
  • 79
    • 36849115659 scopus 로고
    • Self-consistent molecular- orbital methods. IX. An extended Gaussian-type basis for molecular-orbital studies of organic molecules
    • Ditchfield R, Hehre WJ, Pople J (1971) Self-consistent molecular- orbital methods. IX. An extended Gaussian-type basis for molecular-orbital studies of organic molecules. J Chem Phys 54:724-728
    • (1971) J Chem Phys , vol.54 , pp. 724-728
    • Ditchfield, R.1    Hehre, W.J.2    Pople, J.3
  • 80
    • 84986468715 scopus 로고
    • Efficient diffuse function-augmented basis sets for anion calculations. III. The 3-21+G basis set for first-row elements, Li-F
    • Clark T, Chandrasekhar J, Spitznagel GW, PvR S (1983) Efficient diffuse function-augmented basis sets for anion calculations. III. The 3-21+G basis set for first-row elements, Li-F. J Comput Chem 4:294-301
    • (1983) J Comput Chem , vol.4 , pp. 294-301
    • Clark, T.1    Chandrasekhar, J.2    Spitznagel, G.W.3    Pvr, S.4
  • 81
    • 36549091139 scopus 로고
    • Self-consistent molecular orbital methods. 25 Supplementary functions for Gaussian basis sets
    • Frisch MJ, Pople JA, Binkley JS (1984) Self-consistent molecular orbital methods. 25 Supplementary functions for Gaussian basis sets. J Chem Phys 80:3265-3269
    • (1984) J Chem Phys , vol.80 , pp. 3265-3269
    • Frisch, M.J.1    Pople, J.A.2    Binkley, J.S.3
  • 82
    • 66349120487 scopus 로고    scopus 로고
    • Universal solvation model based on solute electron density and a
    • continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions
    • Marenich AV, Cramer CJ, Truhlar DG (2009) Universal solvation model based on solute electron density and a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions. J Phys Chem B 113:6378-6396
    • (2009) J Phys Chem B , vol.113 , pp. 6378-6396
    • Marenich, A.V.1    Cramer, C.J.2    Truhlar, D.G.3
  • 83
    • 0000189651 scopus 로고
    • Density-functional thermochemistry. III. The role of exact exchange
    • Becke AD (1993) Density-functional thermochemistry. III. The role of exact exchange. J Chem Phys 98:5648-5652
    • (1993) J Chem Phys , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 85
    • 0141509423 scopus 로고
    • Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z=11-18
    • McLean AD, Chandler GS (1980) Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z=11-18. J Chem Phys 72:5639-5648
    • (1980) J Chem Phys , vol.72 , pp. 5639-5648
    • McLean, A.D.1    Chandler, G.S.2
  • 86
    • 0031209054 scopus 로고    scopus 로고
    • A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to Isotropic and anisotropic dielectrics
    • Cancès MT, Mennucci B, Tomasi J (1997) A new integral equation formalism for the polarizable continuum model: theoretical background and applications to isotropic and anisotropic dielectrics. J Chem Phys 107:3032-3041 (Pubitemid 127568923)
    • (1997) Journal of Chemical Physics , vol.107 , Issue.8 , pp. 3032-3041
    • Cances, E.1    Mennucci, B.2    Tomasi, J.3
  • 87
    • 0032502372 scopus 로고    scopus 로고
    • Ab initio study of ionic solutions by a polarizable continuum dielectric model
    • PII S0009261498001067
    • Cossi M, Barone V, Mennucci B, Tomasi J (1998) Ab initio study of ionic solutions by a polarizable continuum dielectric model. Chem Phys Lett 286:253-260 (Pubitemid 128181148)
    • (1998) Chemical Physics Letters , vol.286 , Issue.3-4 , pp. 253-260
    • Cossi, M.1    Barone, V.2    Mennucci, B.3    Tomasi, J.4
  • 88
    • 84961979198 scopus 로고    scopus 로고
    • Continuum solvation models: A new approach to the problem of solute's charge distribution and cavity boundaries
    • Mennucci B, Tomasi J (1997) Continuum solvation models: a new approach to the problem of solute's charge distribution and cavity boundaries. J Chem Phys 106:5151-5158 (Pubitemid 126596815)
    • (1996) Journal of Chemical Physics , vol.106 , Issue.12 , pp. 5151-5158
    • Mennucci, B.1    Tomasi, J.2
  • 89
    • 34547240908 scopus 로고    scopus 로고
    • Computational studies of the cyclization of thiosemicarbazides
    • DOI 10.1002/poc.1179
    • Siwek A, Paneth P (2007) Computational studies of the cyclization of thiosemicarbazides. J Phys Org Chem 20:463-468 (Pubitemid 47137949)
    • (2007) Journal of Physical Organic Chemistry , vol.20 , Issue.7 , pp. 463-468
    • Siwek, A.1    Paneth, P.2
  • 90
    • 77956595530 scopus 로고    scopus 로고
    • Structural fluctuations in enzyme-catalyzed reactions: Determinants of reactivity in fatty acid amide hydrolase from multivariate statistical analysis of quantum mechanics/molecular mechanics paths
    • Lodola A, Sirirak J, Fey N, Rivara S, Mor M, Mulholland AJ (2010) Structural fluctuations in enzyme-catalyzed reactions: determinants of reactivity in fatty acid amide hydrolase from multivariate statistical analysis of quantum mechanics/molecular mechanics paths. J Chem Theor Comput 6:2948-2960
    • (2010) J Chem Theor Comput , vol.6 , pp. 2948-2960
    • Lodola, A.1    Sirirak, J.2    Fey, N.3    Rivara, S.4    Mor, M.5    Mulholland, A.J.6
  • 91
    • 84861329446 scopus 로고    scopus 로고
    • Schrödinger LLC, version 56107 Schrödinger, LLC, New York
    • Schrödinger, LLC (2009) Impact, version 56107. Schrödinger, LLC, New York
    • (2009) Impact
  • 92
    • 77957145280 scopus 로고    scopus 로고
    • Experimental verification of force fields for molecular dynamics simulations using Gly-Pro-Gly- Gly
    • Aliev AE, Courtier-Murias D (2010) Experimental verification of force fields for molecular dynamics simulations using Gly-Pro-Gly- Gly. J Phys Chem B 114:12358-12375
    • (2010) J Phys Chem B , vol.114 , pp. 12358-12375
    • Aliev, A.E.1    Courtier-Murias, D.2


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