-
1
-
-
58149204068
-
The protein structure initiative structural genomics knowledgebase
-
Berman H. M., Westbrook J. D., Gabanyi M. J., Tao W., Shah R., Kouranov A., Schwede T., Arnold K., Kiefer F., Bordoli L., Kopp J., Podvinec M., Adams P. D., Carter L. G., Minor W., Nair R., Baer J. L., The protein structure initiative structural genomics knowledgebase Nucleic Acids Research 2009 37 1 D365 D368
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.1
-
-
Berman, H.M.1
Westbrook, J.D.2
Gabanyi, M.J.3
Tao, W.4
Shah, R.5
Kouranov, A.6
Schwede, T.7
Arnold, K.8
Kiefer, F.9
Bordoli, L.10
Kopp, J.11
Podvinec, M.12
Adams, P.D.13
Carter, L.G.14
Minor, W.15
Nair, R.16
Baer, J.L.17
-
2
-
-
0031452318
-
AraC/Xyls family of transcriptional regulators
-
Gallegos M. T., Schleif R., Bairoch A., Hofmann K., Ramos J. L., AraC/Xyls family of transcriptional regulators Microbiology and Molecular Biology Reviews 1997 61 4 393 410 (Pubitemid 28006953)
-
(1997)
Microbiology and Molecular Biology Reviews
, vol.61
, Issue.4
, pp. 393-410
-
-
Gallegos, M.-T.1
Schleif, R.2
Bairoch, A.3
Hofmann, K.4
Ramos, J.L.5
-
3
-
-
41549144323
-
The DNA-binding domain as a functional indicator: The case of the AraC/XylS family of transcription factors
-
DOI 10.1007/s10709-007-9185-y
-
Ibarra J. A., Pérez-Rueda E., Segovia L., Puente J. L., The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors Genetica 2008 133 1 65 76 (Pubitemid 351464227)
-
(2008)
Genetica
, vol.133
, Issue.1
, pp. 65-76
-
-
Ibarra, J.A.1
Perez-Rueda, E.2
Segovia, L.3
Puente, J.L.4
-
4
-
-
0035067086
-
The AraC transcriptional activators
-
DOI 10.1016/S1369-5274(00)00178-8
-
Martin R. G., Rosner J. L., The AraC transcriptional activators Current Opinion in Microbiology 2001 4 2 132 137 (Pubitemid 32294413)
-
(2001)
Current Opinion in Microbiology
, vol.4
, Issue.2
, pp. 132-137
-
-
Martin, R.G.1
Rosner, J.L.2
-
5
-
-
0036786814
-
Growing repertoire of AraC/XylS activators
-
Egan S. M., Growing repertoire of AraC/XylS activators Journal of Bacteriology 2002 184 20 5529 5532
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.20
, pp. 5529-5532
-
-
Egan, S.M.1
-
6
-
-
0000148162
-
Regulation of chromosomally mediated multiple antibiotic resistance: The mar regulon
-
Alekshun M. N., Levy S. B., Regulation of chromosomally mediated multiple antibiotic resistance: the mar regulon Antimicrobial Agents and Chemotherapy 1997 41 10 2067 2075 (Pubitemid 27422192)
-
(1997)
Antimicrobial Agents and Chemotherapy
, vol.41
, Issue.10
, pp. 2067-2075
-
-
Alekshun, M.N.1
Levy, S.B.2
-
7
-
-
25844499232
-
A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli Ada
-
DOI 10.1016/j.molcel.2005.08.013, PII S1097276505015558
-
He C., Hus J. C., Li J. S., Zhou P., Norman D. P. G., Dtsch V., Wei H., Gross J. D., Lane W. S., Wagner G., Verdine G. L., A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli Ada Molecular Cell 2005 20 1 117 129 (Pubitemid 41396567)
-
(2005)
Molecular Cell
, vol.20
, Issue.1
, pp. 117-129
-
-
He, C.1
Hus, J.-C.2
Li, J.S.3
Zhou, P.4
Norman, D.P.G.5
Dotsch, V.6
Wei, H.7
Gross, J.D.8
Lane, W.S.9
Wagner, G.10
Verdine, G.L.11
-
8
-
-
0032169864
-
A novel DNA-binding motif in MarA: The first structure for an AraC family transcriptional activator
-
DOI 10.1073/pnas.95.18.10413
-
Rhee S., Martin R. G., Rosner J. L., Davies D. R., A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator Proceedings of the National Academy of Sciences of the United States of America 1998 95 18 10413 10418 (Pubitemid 28413081)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.18
, pp. 10413-10418
-
-
Rhee, S.1
Martin, R.G.2
Rosner, J.L.3
Davies, D.R.4
-
9
-
-
33644560000
-
The solution structure of the methylated form of the N-terminal 16-kDa domain of Escherichia coli Ada protein
-
Takinowaki H., Matsuda Y., Yoshida T., Kobayashi Y., Ohkubo T., The solution structure of the methylated form of the N-terminal 16-kDa domain of Escherichia coli Ada protein Protein Science 2006 15 3 487 497
-
(2006)
Protein Science
, vol.15
, Issue.3
, pp. 487-497
-
-
Takinowaki, H.1
Matsuda, Y.2
Yoshida, T.3
Kobayashi, Y.4
Ohkubo, T.5
-
10
-
-
0036083835
-
AraC-XylS database: A family of positive transcriptional regulators in bacteria
-
Tobes R., Ramos J. L., AraC-XylS database: a family of positive transcriptional regulators in bacteria Nucleic Acids Research 2002 30 1 318 321 (Pubitemid 34679574)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 318-321
-
-
Tobes, R.1
Ramos, J.L.2
-
11
-
-
79952101808
-
Control of bacterial virulence by AraC-like regulators that respond to chemical signals
-
Yang J., Tauschek M., Robins-Browne R. M., Control of bacterial virulence by AraC-like regulators that respond to chemical signals Trends in Microbiology 2011 19 3 128 135
-
(2011)
Trends in Microbiology
, vol.19
, Issue.3
, pp. 128-135
-
-
Yang, J.1
Tauschek, M.2
Robins-Browne, R.M.3
-
12
-
-
67849124338
-
COPSa novel workbench for explorations in fold space
-
Suhrer S. J., Wiederstein M., Gruber M., Sippl M. J., COPSa novel workbench for explorations in fold space Nucleic Acids Research 2009 37 2 W539 W544
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.2
-
-
Suhrer, S.J.1
Wiederstein, M.2
Gruber, M.3
Sippl, M.J.4
-
13
-
-
40749148575
-
On distance and similarity in fold space
-
DOI 10.1093/bioinformatics/btn040
-
Sippl M. J., On distance and similarity in fold space Bioinformatics 2008 24 6 872 873 (Pubitemid 351386931)
-
(2008)
Bioinformatics
, vol.24
, Issue.6
, pp. 872-873
-
-
Sippl, M.J.1
-
14
-
-
38849092210
-
A note on difficult structure alignment problems
-
DOI 10.1093/bioinformatics/btm622
-
Sippl M. J., Wiederstein M., A note on difficult structure alignment problems Bioinformatics 2008 24 3 426 427 (Pubitemid 351189021)
-
(2008)
Bioinformatics
, vol.24
, Issue.3
, pp. 426-427
-
-
Sippl, M.J.1
Wiederstein, M.2
-
15
-
-
78651319979
-
Ongoing and future developments at the Universal Protein Resource
-
Apweiler R., Martin M. J., O'Donovan C., Magrane M., Alam-Faruque Y., Antunes R., Barrell D., Bely B., Bingley M., Binns D., Ongoing and future developments at the Universal Protein Resource Nucleic Acids Research 2011 39 supplement 1 D214 D219
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.SUPPL. 1
-
-
Apweiler, R.1
Martin, M.J.2
O'Donovan, C.3
Magrane, M.4
Alam-Faruque, Y.5
Antunes, R.6
Barrell, D.7
Bely, B.8
Bingley, M.9
Binns, D.10
-
16
-
-
1842559320
-
Alignment of protein sequences by their profiles
-
DOI 10.1110/ps.03379804
-
Marti-Renom M. A., Madhusudhan M. S., Sali A., Alignment of protein sequences by their profiles Protein Science 2004 13 4 1071 1087 (Pubitemid 38429228)
-
(2004)
Protein Science
, vol.13
, Issue.4
, pp. 1071-1087
-
-
Marti-Renom, M.A.1
Madhusudhan, M.S.2
Sali, A.3
-
17
-
-
84859709120
-
-
Molecular Operating Environment (MOE), Chemical Computing Group, Montreal, Canada
-
Molecular Operating Environment (MOE), Chemical Computing Group, Montreal, Canada
-
-
-
-
18
-
-
75549090603
-
The Pfam protein families database
-
Finn R. D., Mistry J., Tate J., Coggill P., Heger A., Pollington J. E., Gavin O. L., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E. L. L., Eddy S. R., Bateman A., The Pfam protein families database Nucleic Acids Research 2010 38 1 D211 D222
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.1
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.L.12
Eddy, S.R.13
Bateman, A.14
-
19
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K., Misawa K., Kuma K. I., Miyata T., MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform Nucleic Acids Research 2002 30 14 3059 3066 (Pubitemid 34851225)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.14
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.-I.3
Miyata, T.4
-
20
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S., MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods Molecular Biology and Evolution 2011 28 10 2731 2739
-
(2011)
Molecular Biology and Evolution
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
21
-
-
60049091295
-
A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny
-
article 331
-
Wang H. C., Li K., Susko E., Roger A. J., A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny BMC Evolutionary Biology 2008 8 1, article 331
-
(2008)
BMC Evolutionary Biology
, vol.8
, Issue.1
-
-
Wang, H.C.1
Li, K.2
Susko, E.3
Roger, A.J.4
-
22
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
DOI 10.1093/bioinformatics/bti263
-
Abascal F., Zardoya R., Posada D., ProtTest: selection of best-fit models of protein evolution Bioinformatics 2005 21 9 2104 2105 (Pubitemid 40668057)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
23
-
-
33845873289
-
Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation
-
DOI 10.1093/bioinformatics/btl529
-
Letunic I., Bork P., Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation Bioinformatics 2007 23 1 127 128 (Pubitemid 46017867)
-
(2007)
Bioinformatics
, vol.23
, Issue.1
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
24
-
-
65449188232
-
Jalview Version 2-A multiple sequence alignment editor and analysis workbench
-
Waterhouse A. M., Procter J. B., Martin D. M. A., Clamp M., Barton G. J., Jalview Version 2-A multiple sequence alignment editor and analysis workbench Bioinformatics 2009 25 9 1189 1191
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
25
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
DOI 10.1006/jmbi.1993.1626
-
Sali A., Blundell T. L., Comparative protein modelling by satisfaction of spatial restraints Journal of Molecular Biology 1993 234 3 779 815 (Pubitemid 24007801)
-
(1993)
Journal of Molecular Biology
, vol.234
, Issue.3
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
26
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang J., Cieplak P., Kollman P. A., How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? Journal of Computational Chemistry 2000 21 12 1049 1074
-
(2000)
Journal of Computational Chemistry
, vol.21
, Issue.12
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
27
-
-
50349085962
-
3DNA: A versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
-
Lu X. J., Olson W. K., 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures Nature Protocols 2008 3 7 1213 1227
-
(2008)
Nature Protocols
, vol.3
, Issue.7
, pp. 1213-1227
-
-
Lu, X.J.1
Olson, W.K.2
-
28
-
-
77952246173
-
The Protein-DNA Interface database
-
article 262
-
Norambuena T., Melo F., The Protein-DNA Interface database BMC Bioinformatics 2010 11, article 262
-
(2010)
BMC Bioinformatics
, vol.11
-
-
Norambuena, T.1
Melo, F.2
-
29
-
-
0031582083
-
Novel knowledge-based mean force potential at atomic
-
DOI 10.1006/jmbi.1996.0868
-
Melo F., Feytmans E., Novel knowledge-based mean force potential at atomic Journal of Molecular Biology 1997 267 1 207 222 (Pubitemid 27149749)
-
(1997)
Journal of Molecular Biology
, vol.267
, Issue.1
, pp. 207-222
-
-
Melo, F.1
Feytmans, E.2
-
30
-
-
79954460627
-
All-atom knowledge-based potential for RNA structure prediction and assessment
-
Capriotti E., Norambuena T., Marti-Renom M. A., Melo F., All-atom knowledge-based potential for RNA structure prediction and assessment Bioinformatics 2011 27 8 1086 1093
-
(2011)
Bioinformatics
, vol.27
, Issue.8
, pp. 1086-1093
-
-
Capriotti, E.1
Norambuena, T.2
Marti-Renom, M.A.3
Melo, F.4
-
31
-
-
2142738304
-
WebLogo: A sequence logo generator
-
DOI 10.1101/gr.849004
-
Crooks G. E., Hon G., Chandonia J. M., Brenner S. E., WebLogo: a sequence logo generator Genome Research 2004 14 6 1188 1190 (Pubitemid 38811555)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
32
-
-
0036016825
-
Genomics of the marA/soxS/rob regulon of Escherichia coli: Identification of directly activated promoters by application of molecular genetics and informatics to microarray data
-
DOI 10.1046/j.1365-2958.2002.02985.x
-
Martin R. G., Rosner J. L., Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data Molecular Microbiology 2002 44 6 1611 1624 (Pubitemid 34639437)
-
(2002)
Molecular Microbiology
, vol.44
, Issue.6
, pp. 1611-1624
-
-
Martin, R.G.1
Rosner, J.L.2
-
33
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
article R25
-
Langmead B., Trapnell C., Pop M., Salzberg S. L., Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biology 2009 10 3, article R25
-
(2009)
Genome Biology
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
34
-
-
13444304365
-
Integr8 and Genome Reviews: Integrated views of complete genomes and proteomes
-
Kersey P., Bower L., Morris L., Horne A., Petryszak R., Kanz C., Kanapin A., Das U., Michoud K., Phan I., Gattiker A., Kulikova T., Faruque N., Duggan K., McIaren P., Reimholz B., Duret L., Penel S., Reuter I., Apweiler R., Integr8 and Genome Reviews: integrated views of complete genomes and proteomes Nucleic Acids Research 2005 33 D297 D302
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Kersey, P.1
Bower, L.2
Morris, L.3
Horne, A.4
Petryszak, R.5
Kanz, C.6
Kanapin, A.7
Das, U.8
Michoud, K.9
Phan, I.10
Gattiker, A.11
Kulikova, T.12
Faruque, N.13
Duggan, K.14
McIaren, P.15
Reimholz, B.16
Duret, L.17
Penel, S.18
Reuter, I.19
Apweiler, R.20
more..
-
35
-
-
58149203231
-
InterPro: The integrative protein signature database
-
Hunter S., Apweiler R., Attwood T. K., Bairoch A., Bateman A., Binns D., Bork P., Das U., Daugherty L., Duquenne L., Finn R. D., Gough J., Haft D., Hulo N., Kahn D., Kelly E., Laugraud A., Letunic I., Lonsdale D., Lopez R., Madera M., Maslen J., Mcanulla C., McDowall J., Mistry J., Mitchell A., Mulder N., Natale D., Orengo C., Quinn A. F., Selengut J. D., Sigrist C. J. A., Thimma M., Thomas P. D., Valentin F., Wilson D., Wu C. H., Yeats C., InterPro: the integrative protein signature database Nucleic Acids Research 2009 37 1 D211 D215
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.1
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Das, U.8
Daugherty, L.9
Duquenne, L.10
Finn, R.D.11
Gough, J.12
Haft, D.13
Hulo, N.14
Kahn, D.15
Kelly, E.16
Laugraud, A.17
Letunic, I.18
Lonsdale, D.19
Lopez, R.20
Madera, M.21
Maslen, J.22
McAnulla, C.23
McDowall, J.24
Mistry, J.25
Mitchell, A.26
Mulder, N.27
Natale, D.28
Orengo, C.29
Quinn, A.F.30
Selengut, J.D.31
Sigrist, C.J.A.32
Thimma, M.33
Thomas, P.D.34
Valentin, F.35
Wilson, D.36
Wu, C.H.37
Yeats, C.38
more..
-
36
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa M., Goto S., Sato Y., Furumichi M., Tanabe M., KEGG for integration and interpretation of large-scale molecular data sets Nucleic Acids Research 2011 40 1 D109 D114
-
(2011)
Nucleic Acids Research
, vol.40
, Issue.1
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
37
-
-
4744367499
-
Versatility of the carboxy-terminal domain of the subunit of RNA polymerase in transcriptional activation: Use of the DNA contact site as a protein contact site for MarA
-
DOI 10.1111/j.1365-2958.2004.04250.x
-
Dangi B., Gronenborn A. M., Rosner J. L., Martin R. G., Versatility of the carboxy-terminal domain of the subunit of RNA polymerase in transcriptional activation: use of the DNA contact site as a protein contact site for MarA Molecular Microbiology 2004 54 1 45 59 (Pubitemid 39315157)
-
(2004)
Molecular Microbiology
, vol.54
, Issue.1
, pp. 45-59
-
-
Dangi, B.1
Gronenborn, A.M.2
Rosner, J.L.3
Martin, R.G.4
-
38
-
-
0001759947
-
Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA
-
DOI 10.1038/75213
-
Kwon H. J., Bennik M. H. J., Demple B., Ellenberger T., Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA Nature Structural Biology 2000 7 5 424 430 (Pubitemid 30250008)
-
(2000)
Nature Structural Biology
, vol.7
, Issue.5
, pp. 424-430
-
-
Kwon, H.J.1
Bennik, M.H.J.2
Demple, B.3
Ellenberger, T.4
-
39
-
-
70349313266
-
Solution structure of the DNA binding domain of AraC protein
-
Rodgers M. E., Schleif R., Solution structure of the DNA binding domain of AraC protein Proteins 2009 77 1 202 208
-
(2009)
Proteins
, vol.77
, Issue.1
, pp. 202-208
-
-
Rodgers, M.E.1
Schleif, R.2
-
40
-
-
77649246314
-
Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes
-
Lowden M. J., Skorupski K., Pellegrini M., Chiorazzo M. G., Taylor R. K., Kull F. J., Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes Proceedings of the National Academy of Sciences of the United States of America 2010 107 7 2860 2865
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, Issue.7
, pp. 2860-2865
-
-
Lowden, M.J.1
Skorupski, K.2
Pellegrini, M.3
Chiorazzo, M.G.4
Taylor, R.K.5
Kull, F.J.6
-
41
-
-
34250877831
-
Plant cell wall degradation by saprophytic Bacillus subtilis strains: Gene clusters responsible for rhamnogalacturonan depolymerization
-
DOI 10.1128/AEM.00147-07
-
Ochiai A., Itoh T., Kawamata A., Hashimoto W., Murata K., Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization Applied and Environmental Microbiology 2007 73 12 3803 3813 (Pubitemid 46983226)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.12
, pp. 3803-3813
-
-
Ochiai, A.1
Itoh, T.2
Kawamata, A.3
Hashimoto, W.4
Murata, K.5
-
42
-
-
0035212494
-
Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems
-
DOI 10.1128/JB.183.24.7365-7370.2001
-
Kobayashi K., Ogura M., Yamaguchi H., Yoshida K. I., Ogasawara N., Tanaka T., Fujita Y., Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems Journal of Bacteriology 2001 183 24 7365 7370 (Pubitemid 33121870)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.24
, pp. 7365-7370
-
-
Kobayashi, K.1
Ogura, M.2
Yamaguchi, H.3
Yoshida, K.-I.4
Ogasawara, N.5
Tanaka, T.6
Fujita, Y.7
-
43
-
-
37449009285
-
Structure, function, and regulation of the aldouronate utilization gene cluster from Paenibacillus sp. strain JDR-2
-
Chow V., Nong G., Preston J. F., Structure, function, and regulation of the aldouronate utilization gene cluster from Paenibacillus sp. strain JDR-2 Journal of Bacteriology 2007 189 24 8863 8870
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.24
, pp. 8863-8870
-
-
Chow, V.1
Nong, G.2
Preston, J.F.3
-
44
-
-
70350493718
-
Transcriptional activator YesS is stimulated by histidine-phosphorylated HPr of the Bacillus subtilis phosphotransferase system
-
Poncet S., Soret M., Mervelet P., Deutscher J., Noirot P., Transcriptional activator YesS is stimulated by histidine-phosphorylated HPr of the Bacillus subtilis phosphotransferase system Journal of Biological Chemistry 2009 284 41 28188 28197
-
(2009)
Journal of Biological Chemistry
, vol.284
, Issue.41
, pp. 28188-28197
-
-
Poncet, S.1
Soret, M.2
Mervelet, P.3
Deutscher, J.4
Noirot, P.5
-
45
-
-
84859730958
-
The Rhizobium sp. BR816 NodD3 gene is regulated by a transcriptional regulator of the AraC/XylS family
-
Elmerich C. Kondorosi A. Newton W. E. Springer Proceedings of the 11th International Congress on Nitrogen Fixation, Institut Pasteur, Paris, France, July 20-25, 1997
-
Vlassak K. M., Snoeck C., Luyten E., de Wilde P., van Rhijn P., Vanderleyden J., Elmerich C., Kondorosi A., Newton W. E., The Rhizobium sp. BR816 NodD3 gene is regulated by a transcriptional regulator of the AraC/XylS family Biological Nitrogen Fixation for the 21st Century 1998 Springer Proceedings of the 11th International Congress on Nitrogen Fixation, Institut Pasteur, Paris, France, July 20-25, 1997
-
(1998)
Biological Nitrogen Fixation for the 21st Century
-
-
Vlassak, K.M.1
Snoeck, C.2
Luyten, E.3
De Wilde, P.4
Van Rhijn, P.5
Vanderleyden, J.6
-
46
-
-
78649340259
-
PSymA-dependent mobilization of the Sinorhizobium meliloti pSymB megaplasmid
-
Blanca-Ordez H., Oliva-Garca J. J., Pérez-Mendoza D., Soto M. J., Olivares J., Sanjun J., Nogales J., pSymA-dependent mobilization of the Sinorhizobium meliloti pSymB megaplasmid Journal of Bacteriology 2010 192 23 6309 6312
-
(2010)
Journal of Bacteriology
, vol.192
, Issue.23
, pp. 6309-6312
-
-
Blanca-Ordez, H.1
Oliva-Garca, J.J.2
Pérez-Mendoza, D.3
Soto, M.J.4
Olivares, J.5
Sanjun, J.6
Nogales, J.7
-
47
-
-
67149108113
-
Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems
-
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quéré A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Rser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R. A., Broughton W. J., Perret X., Strittmatter A. W., Streit W. R., Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems Applied and Environmental Microbiology 2009 75 12 4035 4045
-
(2009)
Applied and Environmental Microbiology
, vol.75
, Issue.12
, pp. 4035-4045
-
-
Schmeisser, C.1
Liesegang, H.2
Krysciak, D.3
Bakkou, N.4
Le Quéré, A.5
Wollherr, A.6
Heinemeyer, I.7
Morgenstern, B.8
Pommerening-Rser, A.9
Flores, M.10
Palacios, R.11
Brenner, S.12
Gottschalk, G.13
Schmitz, R.A.14
Broughton, W.J.15
Perret, X.16
Strittmatter, A.W.17
Streit, W.R.18
-
48
-
-
0028950304
-
Degradation of the thiocarbamate herbicide EPTC (S-ethyl dipropylcarbamothioate) and biosafening by Rhodococcus sp. Strain NI86/21 involve an inducible cytochrome P-450 system and aldehyde dehydrogenase
-
Nagy I., Schoofs G., Compernolle F., Proost P., Vanderleyden J., De Mot R., Degradation of the thiocarbamate herbicide EPTC (S-ethyl dipropylcarbamothioate) and biosafening by Rhodococcus sp. Strain NI86/21 involve an inducible cytochrome P-450 system and aldehyde dehydrogenase Journal of Bacteriology 1995 177 3 676 687
-
(1995)
Journal of Bacteriology
, vol.177
, Issue.3
, pp. 676-687
-
-
Nagy, I.1
Schoofs, G.2
Compernolle, F.3
Proost, P.4
Vanderleyden, J.5
De Mot, R.6
-
49
-
-
77949547790
-
Ethanolamine utilization in bacterial pathogens: Roles and regulation
-
Garsin D. A., Ethanolamine utilization in bacterial pathogens: roles and regulation Nature Reviews Microbiology 2010 8 4 290 295
-
(2010)
Nature Reviews Microbiology
, vol.8
, Issue.4
, pp. 290-295
-
-
Garsin, D.A.1
-
50
-
-
0037107426
-
Getting across - Bacterial type III effector proteins on their way to the plant cell
-
DOI 10.1093/emboj/cdf536
-
Bttner D., Bonas U., Getting acrossbacterial type III effector proteins on their way to the plant cell EMBO Journal 2002 21 20 5313 5322 (Pubitemid 35231011)
-
(2002)
EMBO Journal
, vol.21
, Issue.20
, pp. 5313-5322
-
-
Buttner, D.1
Bonas, U.2
-
51
-
-
1842558993
-
Characterization of the cis-Acting Regulatory Element Controlling HrpB-Mediated Activation of the Type III Secretion System and Effector Genes in Ralstonia solanacearum
-
DOI 10.1128/JB.186.8.2309-2318.2004
-
Cunnac S., Boucher C., Genin S., Characterization of the cis-acting regulatory element controlling HrpB-mediated activation of the type III secretion system and effector genes in Ralstonia solanacearum Journal of Bacteriology 2004 186 8 2309 2318 (Pubitemid 38451834)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.8
, pp. 2309-2318
-
-
Cunnac, S.1
Boucher, C.2
Genin, S.3
-
52
-
-
33750935820
-
Rhizobia and plant-pathogenic bacteria: Common infection weapons
-
DOI 10.1099/mic.0.29112-0
-
Soto M. J., Sanjun J., Olivares J., Rhizobia and plant-pathogenic bacteria: common infection weapons Microbiology 2006 152 11 3167 3174 (Pubitemid 44734321)
-
(2006)
Microbiology
, vol.152
, Issue.11
, pp. 3167-3174
-
-
Soto, M.J.1
Sanjuan, J.2
Olivares, J.3
-
53
-
-
0348103717
-
Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris
-
DOI 10.1038/nbt923
-
Larimer F. W., Chain P., Hauser L., Lamerdin J., Malfatti S., Do L., Land M. L., Pelletier D. A., Beatty J. T., Lang A. S., Tabita F. R., Gibson J. L., Hanson T. E., Bobst C., Torres Y Torres J. L., Peres C., Harrison F. H., Gibson J., Harwood C. S., Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris Nature Biotechnology 2004 22 1 55 61 (Pubitemid 38057957)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.1
, pp. 55-61
-
-
Larimer, F.W.1
Chain, P.2
Hauser, L.3
Lamerdin, J.4
Malfatti, S.5
Do, L.6
Land, M.L.7
Pelletier, D.A.8
Beatty, J.T.9
Lang, A.S.10
Tabita, F.R.11
Gibson, J.L.12
Hanson, T.E.13
Bobst, C.14
Torres Y Torres, J.L.15
Peres, C.16
Harrison, F.H.17
Gibson, J.18
Harwood, C.S.19
-
54
-
-
27744449033
-
Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris
-
DOI 10.1128/JB.187.22.7784-7794.2005
-
Oda Y., Samanta S. K., Rey F. E., Wu L., Liu X., Yan T., Zhou J., Harwood C. S., Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris Journal of Bacteriology 2005 187 22 7784 7794 (Pubitemid 41587715)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.22
, pp. 7784-7794
-
-
Oda, Y.1
Samanta, S.K.2
Rey, F.E.3
Wu, L.4
Liu, X.5
Yan, T.6
Zhou, J.7
Harwood, C.S.8
-
55
-
-
0036385497
-
A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: Identifying amino acids important for DNA binding and transcription activation
-
Griffith K. L., Wolf R. E., A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation Journal of Molecular Biology 2002 322 2 237 257
-
(2002)
Journal of Molecular Biology
, vol.322
, Issue.2
, pp. 237-257
-
-
Griffith, K.L.1
Wolf, R.E.2
-
56
-
-
0035393302
-
Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
-
Luscombe N. M., Laskowski R. A., Thornton J. M., Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level Nucleic Acids Research 2001 29 13 2860 2874 (Pubitemid 32685051)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.13
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
57
-
-
50249150710
-
Deletion of xylR gene enhances expression of xylose isomerase in Streptomyces lividans TK24
-
Heo G. Y., Kim W. C., Joo G. J., Kwak Y. Y., Shin J. H., Roh D. H., Park H. D., Rhee I. K., Deletion of xylR gene enhances expression of xylose isomerase in Streptomyces lividans TK24 Journal of Microbiology and Biotechnology 2008 18 5 837 844
-
(2008)
Journal of Microbiology and Biotechnology
, vol.18
, Issue.5
, pp. 837-844
-
-
Heo, G.Y.1
Kim, W.C.2
Joo, G.J.3
Kwak, Y.Y.4
Shin, J.H.5
Roh, D.H.6
Park, H.D.7
Rhee, I.K.8
-
58
-
-
0042925627
-
Phenotypic characterization of overexpression or deletion of the Escherichia coli crcA, cspE and crcB genes
-
Sand O., Gingras M., Beck N., Hall C., Trun N., Phenotypic characterization of overexpression or deletion of the Escherichia coli crcA, cspE and crcB genes Microbiology 2003 149 8 2107 2117 (Pubitemid 37038416)
-
(2003)
Microbiology
, vol.149
, Issue.8
, pp. 2107-2117
-
-
Sand, O.1
Gingras, M.2
Beck, N.3
Hall, C.4
Trun, N.5
-
59
-
-
0030612122
-
The structure of enzyme IIA(lactose) from Lactococcus lactis reveals a new fold and points to possible interactions of a multicomponent system
-
Sliz P., Engelmann R., Hengstenberg W., Pai E. F., The structure of enzyme IIA(lactose) from Lactococcus lactis reveals a new fold and points to possible interactions of a multicomponent system Structure 1997 5 6 775 788 (Pubitemid 27307346)
-
(1997)
Structure
, vol.5
, Issue.6
, pp. 775-788
-
-
Sliz, P.1
Engelmann, R.2
Hengstenberg, W.3
Pai, E.F.4
-
60
-
-
0029102108
-
Rhizobium leguminosarum NodT is related to a family of outer-membrane transport proteins that includes TolC, PrtF, CyaE and AprF
-
Rivilla R., Sutton J. M., Downie J. A., Rhizobium leguminosarum NodT is related to a family of outer-membrane transport proteins that includes TolC, PrtF, CyaE and AprF Gene 1995 161 1 27 31
-
(1995)
Gene
, vol.161
, Issue.1
, pp. 27-31
-
-
Rivilla, R.1
Sutton, J.M.2
Downie, J.A.3
-
62
-
-
0037515734
-
The dithiol:disulfide oxidoreductases DsbA and DsbB of Rhodobacter capsulatus are not directly involved in cytochrome c biogenesis, but their inactivation restores the cytochrome c biogenesis defect of CcdA-null mutants
-
DOI 10.1128/JB.185.11.3361-3372.2003
-
Deshmukh M., Turkarslan S., Astor D., Valkova-Valchanova M., Daldal F., The dithiol:disulfide oxidoreductases DsbA and DsbB of Rhodobacter capsulatus are not directly involved in cytochrome c biogenesis, but their inactivation restores the cytochrome c biogenesis defect of CcdA-null mutants Journal of Bacteriology 2003 185 11 3361 3372 (Pubitemid 36617748)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.11
, pp. 3361-3372
-
-
Deshmukh, M.1
Turkarslan, S.2
Astor, D.3
Valkova-Valchanova, M.4
Daldal, F.5
-
63
-
-
33947219284
-
Redirection of metabolism for biological hydrogen production
-
DOI 10.1128/AEM.02565-06
-
Rey F. E., Heiniger E. K., Harwood C. S., Redirection of metabolism for biological hydrogen production Applied and Environmental Microbiology 2007 73 5 1665 1671 (Pubitemid 46417894)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.5
, pp. 1665-1671
-
-
Rey, F.E.1
Heiniger, E.K.2
Harwood, C.S.3
-
64
-
-
0033962472
-
Enhanced nitrogenase activity in strains of Rhodobacter capsulatus that overexpress the rnf genes
-
DOI 10.1128/JB.182.5.1208-1214.2000
-
Jeong H. S., Jouanneau Y., Enhanced nitrogenase activity in strains of Rhodobacter capsulatus that overexpress the rnf genes Journal of Bacteriology 2000 182 5 1208 1214 (Pubitemid 30104395)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.5
, pp. 1208-1214
-
-
Jeong, H.-S.1
Jouanneau, Y.2
|