Genomics of the marA/soxS/rob regulon of Escherichia coli: Identification of directly activated promoters by application of molecular genetics and informatics to microarray data

Molecular Microbiology

Volumn 44, Issue 6, 2002, Pages 1611-1624

  Martin, Robert G ^a   Rosner, Judah L ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; DNA BINDING PROTEIN; ESCHERICHIA COLI PROTEIN; MARA PROTEIN, E COLI; ROB PROTEIN, E COLI; SOXS PROTEIN, E COLI; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR; PARAQUAT; SALICYLIC ACID;

ARTICLE; DNA MICROARRAY; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; GENOMICS; METABOLISM; PROMOTER REGION; REGULON; ALGORITHM; BINDING SITE; CONTROLLED STUDY; DNA FLANKING REGION; GENE EXPRESSION; INFORMATION SCIENCE; MARA GENE; MOLECULAR GENETICS; NONHUMAN; PRIORITY JOURNAL; ROB GENE; SOXS GENE; TRANSCRIPTION INITIATION;

BACTERIAL PROTEINS; DNA-BINDING PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION; GENE EXPRESSION REGULATION, BACTERIAL; GENOMICS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROMOTER REGIONS (GENETICS); REGULON; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0036016825     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2002.02985.x     Document Type: Article

References (35)

1. Regulation of chromosomally mediated multiple antibiotic resistance: The mar regulon
2. Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA
3. The complete genome sequence of Escherichia coli K-12
4. Contribution of the fnr and arcA gene products in coordinate regulation of cytochrome o and d oxidase (cyoABCDE and cydAB) genes in Escherichia coli
5. Cytochromeo (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product
6. Transcriptional regulation of the aconitase genes (acnA and acnB) of Escherichia coli
7. Structure and dynamics of MarA-DNA complexes: An NMR investigation
8. MicF: An antisense RNA gene involved in response of Escherichia coli to global stress factors
9. Redox signaling and gene control in the Escherichia coli soxRS oxidative stress regulon: A review
10. Flavodoxin mutants of Escherichia coli K-12
11. Systematic mutagenesis of the DNA binding sites for SoxS in the zwf and fpr promoters of Escherichia coli: Identifying nucleotides required for DNA binding and transcription activation
12. Evidence for 'pre-recruitment' as a new mechanism of transcription activation in Escherichia coli
13. Dual regulation of the paraquat-inducible gene pqi-5 by SoxS and RpoS in Escherichia coli
14. Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA
15. SoxS, an activator of superoxide stress genes in Escherichia coli. Purification and interaction with DNA
16. Sequence specificity for DNA binding by Escherichia coli. SoxS and Rob proteins
17. Nitroreductase A is regulated as a member of the soxRS regulon of Escherichia coli
18. Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS or Rob
19. The AraC transcriptional activators
20. Structural requirements for marbox function in transcriptional activation of mar/sox/rob regulon promoters in Escherichia coli: Sequence, orientation and spatial relationship to the core promoter
21. Promoter discrimination by the related transcriptional activators MarA and SoxS: Differential regulation by differential binding
22. Complex formation between activator and RNA polymerase as the basis for transcriptional activation by MarA and SoxS in Escherichia coli
23. Regulation beyond the operon
24. Molecular analysis of the gat genes from Escherichia coli and of their roles in galactitol transport and metabolism
25. Regulation of the nfsA gene in Escherichia coli by SoxS
26. Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
27. A novel DNA-binding motif in MarA: The first structure for an AraC family transcriptional activator
28. Posttranscriptional activation of the transcriptional activator Rob by dipyridyl in Escherichia coli
29. Improved single copy and multicopy lac-based cloning vectors for protein and operon fusions
30. Constricted flux through the branched-chain amino acid biosynthetic enzyme acetolactate synthase triggers elevated expression of genes regulated by rpoS and internal acidification
31. Promoter sequences and algorithmical methods for identifying them
32. Interdependence of the position and orientation of SoxS binding sites in the transcription activation of the class I subset of Escherichia coli superoxide-inducible promoters
33. OxyR and SoxRS regulation of.