메뉴 건너뛰기




Volumn 22, Issue 1, 2004, Pages 55-61

Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris

(19)  Larimer, Frank W a,b   Chain, Patrick b,c   Hauser, Loren a,b   Lamerdin, Jane b,c,g   Malfatti, Stephanie b,c   Do, Long b,c,g,h   Land, Miriam L a,b   Pelletier, Dale A a,b   Beatty, J Thomas d   Lang, Andrew S d   Tabita, F Robert e   Gibson, Janet L e   Hanson, Thomas E e,g,i   Bobst, Cedric e   Torres Y Torres, Janelle L f   Peres, Caroline f,g   Harrison, Faith H f   Gibson, Jane f   Harwood, Caroline S f,j  


Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CARBON DIOXIDE; GENES; METABOLISM; NITROGEN FIXATION; PHOTOSYNTHESIS; PLANTS (BOTANY);

EID: 0348103717     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt923     Document Type: Article
Times cited : (624)

References (48)
  • 1
    • 0035936630 scopus 로고    scopus 로고
    • Acetate as a carbon source for hydrogen production by photosynthetic bacteria
    • Barbosa, M.J., Rocha, J.M., Tramper, J. & Wijffels, R.H. Acetate as a carbon source for hydrogen production by photosynthetic bacteria. J. Biotechnol. 85, 25-33 (2001).
    • (2001) J. Biotechnol. , vol.85 , pp. 25-33
    • Barbosa, M.J.1    Rocha, J.M.2    Tramper, J.3    Wijffels, R.H.4
  • 2
    • 0032453315 scopus 로고    scopus 로고
    • Biodegradation and metabolism of unusual carbon compounds by anoxygenic phototrophic bacteria
    • Sasikala, C. & Ramana, C.V. Biodegradation and metabolism of unusual carbon compounds by anoxygenic phototrophic bacteria. Adv. Microb. Physiol. 39, 339-377 (1998).
    • (1998) Adv. Microb. Physiol. , vol.39 , pp. 339-377
    • Sasikala, C.1    Ramana, C.V.2
  • 3
    • 0037184270 scopus 로고    scopus 로고
    • Denitrifying genes in bacterial and archaeal genomes
    • Philippot, L. Denitrifying genes in bacterial and archaeal genomes. Biochim. Biophys. Acta. 1577, 355-376 (2002).
    • (2002) Biochim. Biophys. Acta , vol.1577 , pp. 355-376
    • Philippot, L.1
  • 5
    • 0034687834 scopus 로고    scopus 로고
    • Effect of Bradyrhizobium photosynthesis on stem nodulation of Aeschynomene sensitiva
    • Giraud, E., Hannibal, L., Fardoux, J., Vermeglio, A. & Dreyfus, B. Effect of Bradyrhizobium photosynthesis on stem nodulation of Aeschynomene sensitiva. Proc. Natl. Acad. Sci. USA 97, 14795-14800 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 14795-14800
    • Giraud, E.1    Hannibal, L.2    Fardoux, J.3    Vermeglio, A.4    Dreyfus, B.5
  • 6
    • 0002060483 scopus 로고    scopus 로고
    • Stem nodulation in legumes: Diversity, mechanisms, and unusual characteristics
    • Boivin, C. et al. Stem nodulation in legumes: diversity, mechanisms, and unusual characteristics. Crit. Rev. Plant Sci. 16, 1-30 (1997).
    • (1997) Crit. Rev. Plant Sci. , vol.16 , pp. 1-30
    • Boivin, C.1
  • 7
    • 0037046559 scopus 로고    scopus 로고
    • Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria
    • Giraud, E. et al. Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria. Nature 417, 202-205 (2002).
    • (2002) Nature , vol.417 , pp. 202-205
    • Giraud, E.1
  • 8
    • 0038222576 scopus 로고    scopus 로고
    • Discordant pylogenjes within the rrn loci of Rhizobia
    • van Berkum, P. et al. Discordant pylogenjes within the rrn loci of Rhizobia. J. Bacteriol. 185, 2988-2998 (2003).
    • (2003) J. Bacteriol. , vol.185 , pp. 2988-2998
    • Van Berkum, P.1
  • 9
    • 0032985754 scopus 로고    scopus 로고
    • How photosynthetic bacteria harvest solar energy
    • Cogdell, R.J. et al. How photosynthetic bacteria harvest solar energy. J. Bacteriol. 181, 3869-3879 (1999).
    • (1999) J. Bacteriol. , vol.181 , pp. 3869-3879
    • Cogdell, R.J.1
  • 10
    • 0033586796 scopus 로고    scopus 로고
    • Characterization of the different peripheral light-harvesting complexes from high- and low-light grown cells from Rhodopseudomonas palustris
    • Gall, A. & Robert, B. Characterization of the different peripheral light-harvesting complexes from high- and low-light grown cells from Rhodopseudomonas palustris. Biochemistry 38, 5185-5190 (1999).
    • (1999) Biochemistry , vol.38 , pp. 5185-5190
    • Gall, A.1    Robert, B.2
  • 11
    • 0032698089 scopus 로고    scopus 로고
    • Circadian programs in cyanobacteria: Adaptiveness and mechanism
    • Johnson, C.H. & Golden, S.S. Circadian programs in cyanobacteria: adaptiveness and mechanism. Annu. Rev. Microbiol. 53, 389-409 (1999).
    • (1999) Annu. Rev. Microbiol. , vol.53 , pp. 389-409
    • Johnson, C.H.1    Golden, S.S.2
  • 12
    • 0032840522 scopus 로고    scopus 로고
    • Microbial ribulose-1,5-bisphosphate carboxylase/oxygenase: A different perspective
    • Tabita, F.R. Microbial ribulose-1,5-bisphosphate carboxylase/oxygenase: a different perspective. Photosynthesis Res. 60, 1-28 (1999).
    • (1999) Photosynthesis Res. , vol.60 , pp. 1-28
    • Tabita, F.R.1
  • 14
    • 0014136712 scopus 로고
    • Effect of thiosulfate on the photosynthetic growth of Rhodopseudomonas palustris
    • Rolls, J.P. & Lindstrom, E.S. Effect of thiosulfate on the photosynthetic growth of Rhodopseudomonas palustris. J. Bacteriol. 94, 860-869 (1967).
    • (1967) J. Bacteriol. , vol.94 , pp. 860-869
    • Rolls, J.P.1    Lindstrom, E.S.2
  • 15
    • 0035836695 scopus 로고    scopus 로고
    • A ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress
    • Hanson, T.E. & Tabita, F.R. A ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress. Proc. Natl. Acad. Sci. USA 98, 4397-4402 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4397-4402
    • Hanson, T.E.1    Tabita, F.R.2
  • 16
    • 0347506350 scopus 로고    scopus 로고
    • Insights into the stress response and sulfur metabolism revealed by proteome analysis of a Chlorobium tepidum mutant lacking the RubisCO-like protein
    • Hanson, T.E. & Tabita, F.R. Insights into the stress response and sulfur metabolism revealed by proteome analysis of a Chlorobium tepidum mutant lacking the RubisCO-like protein. Photosynthesis Res. 78, 231-248 (2003).
    • (2003) Photosynthesis Res. , vol.78 , pp. 231-248
    • Hanson, T.E.1    Tabita, F.R.2
  • 17
    • 0242500990 scopus 로고    scopus 로고
    • Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation
    • Do, Y.S. et al. Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation. Appl. Environ. Microbiol. 69, 1710-1720 (2003).
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1710-1720
    • Do, Y.S.1
  • 18
    • 0002770392 scopus 로고
    • (eds. Blankenship, R.E., Madigan, M.T. & Bauer, C.E.) (Kluwer Academic Publishers, Dordrecht
    • Kobayashi, M. & Kobayashi, M. in Anoxygenic Photosynthetic Bacteria (eds. Blankenship, R.E., Madigan, M.T. & Bauer, C.E.) 1269-1282 (Kluwer Academic Publishers, Dordrecht, The Netherlands, 1995).
    • (1995) Anoxygenic Photosynthetic Bacteria , pp. 1269-1282
    • Kobayashi, M.1    Kobayashi, M.2
  • 19
    • 0030876827 scopus 로고    scopus 로고
    • Reductive dehalogenation of halocarboxylic acids by the phototrophic genera Rhodospirillum and Rhodopseudomonas
    • McGrath, J.E. & Harfoot, C.G. Reductive dehalogenation of halocarboxylic acids by the phototrophic genera Rhodospirillum and Rhodopseudomonas. Appl. Environ. Microbiol. 63, 3333-3335 (1997).
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3333-3335
    • McGrath, J.E.1    Harfoot, C.G.2
  • 20
    • 0035286629 scopus 로고    scopus 로고
    • Reductive, coenzyme A-mediated pathway for 3-chlorobenzoate degradation in the phototrophic bacterium Rhodopseudomonas palustris
    • Egland, P.G., Gibson, J. & Harwood, C.S. Reductive, coenzyme A-mediated pathway for 3-chlorobenzoate degradation in the phototrophic bacterium Rhodopseudomonas palustris. Appl. Environ. Microbiol. 67, 1396-1399 (2001).
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1396-1399
    • Egland, P.G.1    Gibson, J.2    Harwood, C.S.3
  • 22
    • 0036257412 scopus 로고    scopus 로고
    • Phototrophic transformation of phenol to 4-hydroxyphenylacetate by Rhodopseudomonas palustris
    • Noh, U., Heck, S., Giffhorn, F. & Kohring, G.W. Phototrophic transformation of phenol to 4-hydroxyphenylacetate by Rhodopseudomonas palustris. Appl. Microbiol. Biotechnol. 58, 830-835 (2002).
    • (2002) Appl. Microbiol. Biotechnol. , vol.58 , pp. 830-835
    • Noh, U.1    Heck, S.2    Giffhorn, F.3    Kohring, G.W.4
  • 23
    • 0037334798 scopus 로고    scopus 로고
    • Roles of the enantioselective glutathione S-transferases in cleavage of beta-aryl ether
    • Masai, E. et al. Roles of the enantioselective glutathione S-transferases in cleavage of beta-aryl ether. J. Bacteriol. 185, 1768-1775 (2003).
    • (2003) J. Bacteriol. , vol.185 , pp. 1768-1775
    • Masai, E.1
  • 24
    • 0035845587 scopus 로고    scopus 로고
    • Novel domains of the prokaryotic two-component signal transduction systems
    • Galperin, M.Y., Nikolskaya, A.N. & Koonin, E.V. Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol. Lett. 203, 11-21 (2001).
    • (2001) FEMS Microbiol. Lett. , vol.203 , pp. 11-21
    • Galperin, M.Y.1    Nikolskaya, A.N.2    Koonin, E.V.3
  • 25
    • 0035985580 scopus 로고    scopus 로고
    • The extracytoplasmic function (ECF) sigma factors
    • Helmann, J.D. The extracytoplasmic function (ECF) sigma factors. Adv. Microb. Physiol. 46, 47-110 (2002).
    • (2002) Adv. Microb. Physiol. , vol.46 , pp. 47-110
    • Helmann, J.D.1
  • 26
    • 0035955551 scopus 로고    scopus 로고
    • The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor
    • Newman, J.D., Anthony, J.R. & Donohue, T.J. The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor. J. Mol. Biol. 313, 485-499 (2001).
    • (2001) J. Mol. Biol. , vol.313 , pp. 485-499
    • Newman, J.D.1    Anthony, J.R.2    Donohue, T.J.3
  • 27
    • 0035038533 scopus 로고    scopus 로고
    • The gene transfer agent of Rhodobacter capsulatus and "constitutive transduction" in prokaryotes
    • Lang, A.S. & Beatty, J.T. The gene transfer agent of Rhodobacter capsulatus and "constitutive transduction" in prokaryotes. Arch. Microbiol. 175, 241-249 (2001).
    • (2001) Arch. Microbiol. , vol.175 , pp. 241-249
    • Lang, A.S.1    Beatty, J.T.2
  • 28
    • 0037215536 scopus 로고    scopus 로고
    • Quorum sensing controls exopolysaccharide production in Sinorhizobium meliloti
    • Marketon, M.M., Glenn, S.A., Eberhard, A. & Gonzalez, J.E. Quorum sensing controls exopolysaccharide production in Sinorhizobium meliloti. J. Bacteriol. 185, 325-331 (2003).
    • (2003) J. Bacteriol. , vol.185 , pp. 325-331
    • Marketon, M.M.1    Glenn, S.A.2    Eberhard, A.3    Gonzalez, J.E.4
  • 29
    • 0036889326 scopus 로고    scopus 로고
    • Long-chain acyl-homoserine lactone quorum-sensing regulation of Rhodobacter capsulatus gene transfer agent production
    • Schaefer, A.L., Taylor, T.A., Beatty, J.T. & Greenberg, E.P. Long-chain acyl-homoserine lactone quorum-sensing regulation of Rhodobacter capsulatus gene transfer agent production. J. Bacteriol. 184, 6515-6521 (2002).
    • (2002) J. Bacteriol. , vol.184 , pp. 6515-6521
    • Schaefer, A.L.1    Taylor, T.A.2    Beatty, J.T.3    Greenberg, E.P.4
  • 30
    • 0034604396 scopus 로고    scopus 로고
    • Microbial genome analysis: Comparative transport capabilities in eighteen prokaryotes
    • Paulson, I.T., Nguyen, L., Sliwinski, M.K., Rabus, R. & Saier, M.H. Jr. Microbial genome analysis: comparative transport capabilities in eighteen prokaryotes. J. Mol. Biol. 301, 75-100 (2000).
    • (2000) J. Mol. Biol. , vol.301 , pp. 75-100
    • Paulson, I.T.1    Nguyen, L.2    Sliwinski, M.K.3    Rabus, R.4    Saier Jr., M.H.5
  • 31
    • 0343603660 scopus 로고    scopus 로고
    • A functional-phylogenetic classification system for transmembrane solute transporters
    • Saier, M.H. Jr. A functional-phylogenetic classification system for transmembrane solute transporters. Microbiol. Mol. Biol. Rev. 64, 354-411 (2000).
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 354-411
    • Saier Jr., M.H.1
  • 32
    • 0036850783 scopus 로고    scopus 로고
    • Transport and detoxification systems for transition metals, heavy metals and metalloids in eukaryotic and prokaryotic microbes
    • Rosen, B.P. Transport and detoxification systems for transition metals, heavy metals and metalloids in eukaryotic and prokaryotic microbes. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 133, 689-693 (2002).
    • (2002) Comp. Biochem. Physiol. A Mol. Integr. Physiol. , vol.133 , pp. 689-693
    • Rosen, B.P.1
  • 33
    • 0035217633 scopus 로고    scopus 로고
    • Conjugal type IV macromolecular transfer systems of Gram-negative bacteria: Organismal distribution, structural constraints and evolutionary conclusions
    • Cao, T.B. & Saier, M.H. Jr. Conjugal type IV macromolecular transfer systems of Gram-negative bacteria: organismal distribution, structural constraints and evolutionary conclusions. Microbiology 147, 3201-3214 (2001).
    • (2001) Microbiology , vol.147 , pp. 3201-3214
    • Cao, T.B.1    Saier Jr., M.H.2
  • 35
    • 0034889137 scopus 로고    scopus 로고
    • The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea
    • Kelly, D.J. & Thomas, G.H. The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea. FEMS Microbiol. Rev. 25, 405-424 (2001).
    • (2001) FEMS Microbiol. Rev. , vol.25 , pp. 405-424
    • Kelly, D.J.1    Thomas, G.H.2
  • 36
    • 0036308495 scopus 로고    scopus 로고
    • Genotypic and phenotypic diversity within species of purple nonsulfur bacteria isolated from aquatic sediments
    • Oda, Y. et al. Genotypic and phenotypic diversity within species of purple nonsulfur bacteria isolated from aquatic sediments. Appl. Environ. Microbiol. 68, 3467-3477 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3467-3477
    • Oda, Y.1
  • 37
    • 0035091011 scopus 로고    scopus 로고
    • Genetic organization of the region encoding regulation, biosynthesis, and transport of rhizobactin 1021, a siderophore produced by Sinorhizobium meliloti
    • Lynch, D. et al. Genetic organization of the region encoding regulation, biosynthesis, and transport of rhizobactin 1021, a siderophore produced by Sinorhizobium meliloti. J. Bacteriol. 183, 2576-2585 (2001).
    • (2001) J. Bacteriol. , vol.183 , pp. 2576-2585
    • Lynch, D.1
  • 38
    • 0036046297 scopus 로고    scopus 로고
    • Iron transport and regulation cell signalling and genomics: Lessons from Escherichia coli and Pseudomonas
    • Visca, P., Leoni, L., Wilson, M.J. & Lamont, I.L. Iron transport and regulation, cell signalling and genomics: lessons from Escherichia coli and Pseudomonas. Mol. Microbiol. 45, 1177-1190 (2002).
    • (2002) Mol. Microbiol. , vol.45 , pp. 1177-1190
    • Visca, P.1    Leoni, L.2    Wilson, M.J.3    Lamont, I.L.4
  • 39
    • 0028874492 scopus 로고
    • Biotechnological potentials of anoxygenic phototrophic bacteria. II. Biopolyesters, biopesticide, biofuel, and biofertilizer
    • Sasikala, C. & Ramana, C.V. Biotechnological potentials of anoxygenic phototrophic bacteria. II. Biopolyesters, biopesticide, biofuel, and biofertilizer. Adv. Appl. Microbiol. 41, 227-278 (1995).
    • (1995) Adv. Appl. Microbiol. , vol.41 , pp. 227-278
    • Sasikala, C.1    Ramana, C.V.2
  • 40
    • 0001219252 scopus 로고    scopus 로고
    • Structure-function relationships of alternative nitrogenases
    • Eady, R.R. Structure-function relationships of alternative nitrogenases. Chem. Rev. 96, 3013-3030 (1996).
    • (1996) Chem. Rev. , vol.96 , pp. 3013-3030
    • Eady, R.R.1
  • 41
    • 0029653518 scopus 로고
    • Whole genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann, R.D. et al. Whole genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512 (1995).
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 42
    • 0026594245 scopus 로고
    • Stable propagation of cosmid sized human DNA inserts in an F factor based vector
    • Kim, U.J., Shizuya, H., deJong, P.J., Birren, B. & Simon, M.I. Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res. 20, 1083-1085 (1992).
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1083-1085
    • Kim, U.J.1    Shizuya, H.2    DeJong, P.J.3    Birren, B.4    Simon, M.I.5
  • 43
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B. & Green, P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8, 186-194 (1998).
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 44
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M.C. & Green, P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8, 175-185 (1998).
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 45
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon, D., Abajian, C. & Green, P. Consed: a graphical tool for sequence finishing. Genome Res. 8, 195-202 (1998).
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 46
    • 0037408431 scopus 로고    scopus 로고
    • Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea
    • Chain, P. et al. Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. J. Bacteriol. 185, 2759-2773 (2003).
    • (2003) J. Bacteriol. , vol.185 , pp. 2759-2773
    • Chain, P.1
  • 47
    • 0032900737 scopus 로고    scopus 로고
    • CRITICA: Coding region identification tool invoking comparative analysis
    • Badger, J.H. & Olsen, G.J. CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol. 16, 512-524 (1999).
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 512-524
    • Badger, J.H.1    Olsen, G.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.