-
1
-
-
0037135111
-
The Amyloid Hypothesis of Alzheimer's Disease: Progress and Problems on the Road to Therapeutics
-
Hardy J, Selkoe DJ, (2002) The Amyloid Hypothesis of Alzheimer's Disease: Progress and Problems on the Road to Therapeutics. Science 297: 353-356.
-
(2002)
Science
, vol.297
, pp. 353-356
-
-
Hardy, J.1
Selkoe, D.J.2
-
2
-
-
0036708168
-
Paradigm Shifts in Alzheimer's Disease and Other Neurodegenerative Disorders: The Emerging Role of Oligomeric Assemblies
-
Kirkitadze MD, Bitan G, Teplow DB, (2002) Paradigm Shifts in Alzheimer's Disease and Other Neurodegenerative Disorders: The Emerging Role of Oligomeric Assemblies. J Neurosci Res 69: 567-577.
-
(2002)
J Neurosci Res
, vol.69
, pp. 567-577
-
-
Kirkitadze, M.D.1
Bitan, G.2
Teplow, D.B.3
-
3
-
-
0036173420
-
ADDLs & protofibrils - the missing links?
-
Klein WL, (2002) ADDLs & protofibrils- the missing links? Neurobiol Aging 23: 231-233.
-
(2002)
Neurobiol Aging
, vol.23
, pp. 231-233
-
-
Klein, W.L.1
-
4
-
-
0042845877
-
Alzheimer's disease: Genetic evidence points to a single pathogenesis
-
Hardy J, (2003) Alzheimer's disease: Genetic evidence points to a single pathogenesis. Ann Neuro 54: 143-144.
-
(2003)
Ann Neuro
, vol.54
, pp. 143-144
-
-
Hardy, J.1
-
5
-
-
2542455537
-
Small assemblies of unmodified amyloid β-protein are the proximate neurotoxin in Alzheimer's disease
-
Klein WL, Stine WB, Teplow DB, (2004) Small assemblies of unmodified amyloid β-protein are the proximate neurotoxin in Alzheimer's disease. Neurobiol Aging 25: 569-580.
-
(2004)
Neurobiol Aging
, vol.25
, pp. 569-580
-
-
Klein, W.L.1
Stine, W.B.2
Teplow, D.B.3
-
6
-
-
15944426127
-
Amyloid accumulation and pathogensis of Alzheimer's disease: Significance of monomeric, oligomeric and fibrillar Aβ
-
Glabe CG, (2005) Amyloid accumulation and pathogensis of Alzheimer's disease: significance of monomeric, oligomeric and fibrillar Aβ. Subcell Biochem 38: 167-177.
-
(2005)
Subcell Biochem
, vol.38
, pp. 167-177
-
-
Glabe, C.G.1
-
7
-
-
63849197629
-
Amyloid β-protein assembly and Alzheimer disease
-
Roychaudhuri R, Yang M, Hoshi MM, Teplow DB, (2008) Amyloid β-protein assembly and Alzheimer disease. J Biol Chem 284: 4749-53.
-
(2008)
J Biol Chem
, vol.284
, pp. 4749-4753
-
-
Roychaudhuri, R.1
Yang, M.2
Hoshi, M.M.3
Teplow, D.B.4
-
8
-
-
0027258525
-
The Carboxy Terminus of the β Amyloid Protein is Critical for the Seeding of Amyloid Formation: Implications for the Pathogenesis of Alzheimer's Disease
-
Jarrett JT, Berger EP, Lansbury PT, (1993) The Carboxy Terminus of the β Amyloid Protein is Critical for the Seeding of Amyloid Formation: Implications for the Pathogenesis of Alzheimer's Disease. Biochemistry 32: 4693-4697.
-
(1993)
Biochemistry
, vol.32
, pp. 4693-4697
-
-
Jarrett, J.T.1
Berger, E.P.2
Lansbury, P.T.3
-
9
-
-
0027425060
-
The C-terminus of the β protein is critical in amyloidogenesis
-
Jarrett JT, Berger EP, Lansbury PT, (1993) The C-terminus of the β protein is critical in amyloidogenesis. Ann N Y Acad Sci 695: 144-148.
-
(1993)
Ann N Y Acad Sci
, vol.695
, pp. 144-148
-
-
Jarrett, J.T.1
Berger, E.P.2
Lansbury, P.T.3
-
10
-
-
0034623284
-
Mutant Presenilin 2 Transgenic Mice. A large increase in the levels of Aβ 42 is presumably associated with the low density membrane domain that contains decreased levels of glycerophospholipids and sphingomyelin
-
Sawamura N, Morishima-Kawashima M, Waki H, Kobayashi K, Kuramochi T, et al. (2000) Mutant Presenilin 2 Transgenic Mice. A large increase in the levels of Aβ 42 is presumably associated with the low density membrane domain that contains decreased levels of glycerophospholipids and sphingomyelin. J Biol Chem 275: 27901-27908.
-
(2000)
J Biol Chem
, vol.275
, pp. 27901-27908
-
-
Sawamura, N.1
Morishima-Kawashima, M.2
Waki, H.3
Kobayashi, K.4
Kuramochi, T.5
-
11
-
-
0037200117
-
Oligomeric and Fibrillar Species of Amyloid-β Peptides Differentially Affect Neuronal Viability
-
Dahlgren KN, Manelli AM, Stine WB, Baker LK, Krafft GA, et al. (2002) Oligomeric and Fibrillar Species of Amyloid-β Peptides Differentially Affect Neuronal Viability. J Biol Chem 277: 32046-32053.
-
(2002)
J Biol Chem
, vol.277
, pp. 32046-32053
-
-
Dahlgren, K.N.1
Manelli, A.M.2
Stine, W.B.3
Baker, L.K.4
Krafft, G.A.5
-
12
-
-
77951904937
-
Despite its role in assembly, methionine 35 is not necessary for amyloid β-protein toxicity
-
Maiti P, Lomakin A, Benedek G, Bitan G, (2010) Despite its role in assembly, methionine 35 is not necessary for amyloid β-protein toxicity. J Neurochem 113: 1252-1262.
-
(2010)
J Neurochem
, vol.113
, pp. 1252-1262
-
-
Maiti, P.1
Lomakin, A.2
Benedek, G.3
Bitan, G.4
-
13
-
-
22544482926
-
Aβ42 is essential for parenchymal and vascular amyloid deposition in mice
-
McGowan E, Pickford F, Kim J, Onstead L, Eriksen J, et al. (2005) Aβ42 is essential for parenchymal and vascular amyloid deposition in mice. Neuron 47: 191-199.
-
(2005)
Neuron
, vol.47
, pp. 191-199
-
-
McGowan, E.1
Pickford, F.2
Kim, J.3
Onstead, L.4
Eriksen, J.5
-
14
-
-
2342473791
-
Dissecting the pathological effects of human Aβ40 and Aβ42 in Drosophila: A potential model for Alzheimer's disease
-
Iijima K, Liu H, Chiang A, Hearn S, Konsolaki M, et al. (2004) Dissecting the pathological effects of human Aβ40 and Aβ42 in Drosophila: A potential model for Alzheimer's disease. Proc Natl Acad Sci USA 101: 6623-6628.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6623-6628
-
-
Iijima, K.1
Liu, H.2
Chiang, A.3
Hearn, S.4
Konsolaki, M.5
-
15
-
-
0037422540
-
Amyloid β-protein (Aβ) assembly: Aβ40 and Aβ42 oligomerize through distinct pathways
-
Bitan G, Kirkitadze MD, Lomakin A, Vollers SS, Benedek GB, et al. (2003) Amyloid β-protein (Aβ) assembly: Aβ40 and Aβ42 oligomerize through distinct pathways. Proc Natl Acad Sci USA 100: 330-335.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 330-335
-
-
Bitan, G.1
Kirkitadze, M.D.2
Lomakin, A.3
Vollers, S.S.4
Benedek, G.B.5
-
16
-
-
67849106670
-
Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease
-
Bernstein SL, Dupuis NF, Lazo ND, Wyttenbach T, Condron MM, et al. (2009) Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease. Nat Chem 1: 326-331.
-
(2009)
Nat Chem
, vol.1
, pp. 326-331
-
-
Bernstein, S.L.1
Dupuis, N.F.2
Lazo, N.D.3
Wyttenbach, T.4
Condron, M.M.5
-
17
-
-
33846073514
-
Computer Simulations of Alzheimer's Amyloid β-Protein Folding and Assembly
-
Urbanc B, Cruz L, Teplow DB, Stanley HE, (2006) Computer Simulations of Alzheimer's Amyloid β-Protein Folding and Assembly. Curr Alzheimer Res 3: 493-504.
-
(2006)
Curr Alzheimer Res
, vol.3
, pp. 493-504
-
-
Urbanc, B.1
Cruz, L.2
Teplow, D.B.3
Stanley, H.E.4
-
18
-
-
45249089694
-
Role of the Region 23-28 in Aβ Fibril Formation: Insights from Simulations of the Monomers and Dimers of Alzheimer's Peptides Aβ40 and Aβ42
-
Melquiond A, Dong X, Mousseau N, Derreumaux P, (2008) Role of the Region 23-28 in Aβ Fibril Formation: Insights from Simulations of the Monomers and Dimers of Alzheimer's Peptides Aβ40 and Aβ42. Curr Alzheimer Res 5: 244-250.
-
(2008)
Curr Alzheimer Res
, vol.5
, pp. 244-250
-
-
Melquiond, A.1
Dong, X.2
Mousseau, N.3
Derreumaux, P.4
-
19
-
-
10644278760
-
In silico study of amyloid β-protein folding and oligomerization
-
Urbanc B, Cruz L, Yun S, Buldyrev SV, Bitan G, et al. (2004) In silico study of amyloid β-protein folding and oligomerization. Proc Natl Acad Sci USA 101: 17345-17350.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17345-17350
-
-
Urbanc, B.1
Cruz, L.2
Yun, S.3
Buldyrev, S.V.4
Bitan, G.5
-
20
-
-
67849095816
-
Effects of the Arctic (E22!G) Mutation on Amyloid β-Protein Folding: Discrete Molecular Dynamics Study
-
Lam A, Teplow DB, Stanley HE, Urbanc B, (2008) Effects of the Arctic (E22!G) Mutation on Amyloid β-Protein Folding: Discrete Molecular Dynamics Study. J Am Chem Soc 130: 17413-17422.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 17413-17422
-
-
Lam, A.1
Teplow, D.B.2
Stanley, H.E.3
Urbanc, B.4
-
21
-
-
77950219248
-
Elucidation of Amyloid β-Protein Oligomerization Mechanisms: Discrete Molecular Dynamics Study
-
Urbanc B, Betnel M, Cruz L, Bitan G, Teplow DB, (2010) Elucidation of Amyloid β-Protein Oligomerization Mechanisms: Discrete Molecular Dynamics Study. J Am Chem Soc 132: 4266-4280.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 4266-4280
-
-
Urbanc, B.1
Betnel, M.2
Cruz, L.3
Bitan, G.4
Teplow, D.B.5
-
22
-
-
0041816383
-
Elucidation of Primary Structure Elements Controlling Early Amyloid β-Protein Oligomerization
-
Bitan G, Vollers SS, Teplow DB, (2003) Elucidation of Primary Structure Elements Controlling Early Amyloid β-Protein Oligomerization. J Biol Chem 278: 34882-34889.
-
(2003)
J Biol Chem
, vol.278
, pp. 34882-34889
-
-
Bitan, G.1
Vollers, S.S.2
Teplow, D.B.3
-
23
-
-
0035173352
-
NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, Aβ (1-40)ox and Aβ (1-42)ox
-
Riek R, Güntert P, Döbeli H, Wipf B, Wüthrich K, (2001) NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, Aβ (1-40)ox and Aβ (1-42)ox. Eur J Biochem 268: 5930-5936.
-
(2001)
Eur J Biochem
, vol.268
, pp. 5930-5936
-
-
Riek, R.1
Güntert, P.2
Döbeli, H.3
Wipf, B.4
Wüthrich, K.5
-
24
-
-
22444449900
-
On the nucleation of amyloid β-protein monomer folding
-
Lazo ND, Grant MA, Condron MC, Rigby AC, Teplow DB, (2005) On the nucleation of amyloid β-protein monomer folding. Protein Sci 14: 1581-1596.
-
(2005)
Protein Sci
, vol.14
, pp. 1581-1596
-
-
Lazo, N.D.1
Grant, M.A.2
Condron, M.C.3
Rigby, A.C.4
Teplow, D.B.5
-
25
-
-
33751106208
-
Aβ42 is More Rigid Than Aβ40 at the C Terminus: Implications for Aβ Aggregation and Toxicity
-
Yan Y, Wang C, (2006) Aβ42 is More Rigid Than Aβ40 at the C Terminus: Implications for Aβ Aggregation and Toxicity. J Mol Biol 364: 853-862.
-
(2006)
J Mol Biol
, vol.364
, pp. 853-862
-
-
Yan, Y.1
Wang, C.2
-
26
-
-
34247234602
-
The Alzheimer's Peptides Aβ40 and 42 Adopt Distinct Conformations in Water: A Combined MD/NMR Study
-
Sgourakis N, Yan Y, McCallum S, Wang C, Garcia A, (2007) The Alzheimer's Peptides Aβ40 and 42 Adopt Distinct Conformations in Water: A Combined MD/NMR Study. J Mol Biol 368: 1448-1457.
-
(2007)
J Mol Biol
, vol.368
, pp. 1448-1457
-
-
Sgourakis, N.1
Yan, Y.2
McCallum, S.3
Wang, C.4
Garcia, A.5
-
27
-
-
80051658781
-
Distinct Morphologies for Amyloid β Protein Monomer: Aβ1-40, Aβ1-42, and Aβ1-40 (D23N)
-
Cote S, Derreumaux P, Mousseau N, (2011) Distinct Morphologies for Amyloid β Protein Monomer: Aβ1-40, Aβ1-42, and Aβ1-40 (D23N). J Chem Theory Comput 7: 2584-2592.
-
(2011)
J Chem Theory Comput
, vol.7
, pp. 2584-2592
-
-
Cote, S.1
Derreumaux, P.2
Mousseau, N.3
-
28
-
-
79955486832
-
Characterizing the Structural Behavior of Selected Aβ42 Monomers with Different Solubilities
-
Velez-Vega C, Escobedo F, (2011) Characterizing the Structural Behavior of Selected Aβ42 Monomers with Different Solubilities. J Phys Chem B 115: 4900-4910.
-
(2011)
J Phys Chem B
, vol.115
, pp. 4900-4910
-
-
Velez-Vega, C.1
Escobedo, F.2
-
29
-
-
79958703402
-
Structural Basis of Aβ1-42 Toxicity Inhibition by Aβ C-Terminal Fragments: Discrete Molecular Dynamics Study
-
Urbanc B, Betnel M, Cruz L, Li H, Fradinger E, et al. (2011) Structural Basis of Aβ1-42 Toxicity Inhibition by Aβ C-Terminal Fragments: Discrete Molecular Dynamics Study. J Mol Biol 410: 316-328.
-
(2011)
J Mol Biol
, vol.410
, pp. 316-328
-
-
Urbanc, B.1
Betnel, M.2
Cruz, L.3
Li, H.4
Fradinger, E.5
-
30
-
-
77955862476
-
Multiscale investigation of chemical interference in proteins
-
Samiotakis A, Homouz D, Cheung M, (2010) Multiscale investigation of chemical interference in proteins. J Chem Phys 132: 175101.
-
(2010)
J Chem Phys
, vol.132
, pp. 175101
-
-
Samiotakis, A.1
Homouz, D.2
Cheung, M.3
-
31
-
-
17244372981
-
Conformational transition of amyloid β-peptide
-
Xu Y, Shen J, Luo X, Zhu W, Chen K, et al. (2005) Conformational transition of amyloid β-peptide. Proc Natl Acad Sci USA 102: 5403-5407.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5403-5407
-
-
Xu, Y.1
Shen, J.2
Luo, X.3
Zhu, W.4
Chen, K.5
-
32
-
-
33645396508
-
All-atom molecular dynamics studies of the full-length β-amyloid peptides
-
Luttmann E, Fels G, (2006) All-atom molecular dynamics studies of the full-length β-amyloid peptides. Chem Phys 323: 138-147.
-
(2006)
Chem Phys
, vol.323
, pp. 138-147
-
-
Luttmann, E.1
Fels, G.2
-
33
-
-
32344451179
-
The β-to-β conformational transition of Alzheimer's Aβ-(1-42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of β conformation seeding
-
Tomaselli S, Esposito V, Vangone P, van Nuland NAJ, Bonvin AMJJ, et al. (2006) The β-to-β conformational transition of Alzheimer's Aβ-(1-42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of β conformation seeding. Chembiochem 7: 257-267.
-
(2006)
Chembiochem
, vol.7
, pp. 257-267
-
-
Tomaselli, S.1
Esposito, V.2
Vangone, P.3
van Nuland, N.A.J.4
Bonvin, A.M.J.J.5
-
34
-
-
34248194356
-
Molecular Dynamics Study of the β Amyloid Peptide of Alzheimer's Disease and Its Divalent Copper Complexes
-
Raffa DF, Rauk A, (2007) Molecular Dynamics Study of the β Amyloid Peptide of Alzheimer's Disease and Its Divalent Copper Complexes. J Phys Chem B 111: 3789-3799.
-
(2007)
J Phys Chem B
, vol.111
, pp. 3789-3799
-
-
Raffa, D.F.1
Rauk, A.2
-
35
-
-
56849095483
-
Intrinsic thermal expansivity and hydrational properties of amyloid peptide Aβ42 in liquid water
-
Brovchenko I, Burri R, Krukau A, Oleinikova A, Winter R, (2008) Intrinsic thermal expansivity and hydrational properties of amyloid peptide Aβ42 in liquid water. J Chem Phys 129: 195101.
-
(2008)
J Chem Phys
, vol.129
, pp. 195101
-
-
Brovchenko, I.1
Burri, R.2
Krukau, A.3
Oleinikova, A.4
Winter, R.5
-
36
-
-
48549095605
-
Comparative Molecular Dynamics Studies of Wild-Type and Oxidized Forms of Full-Length Alzheimer Amyloid β-Peptides Aβ (1-40) and Aβ (1-42)
-
Triguero L, Singh R, Prabhakar R, (2008) Comparative Molecular Dynamics Studies of Wild-Type and Oxidized Forms of Full-Length Alzheimer Amyloid β-Peptides Aβ (1-40) and Aβ (1-42). J Phys Chem B 112: 7123-7131.
-
(2008)
J Phys Chem B
, vol.112
, pp. 7123-7131
-
-
Triguero, L.1
Singh, R.2
Prabhakar, R.3
-
37
-
-
67349153842
-
Molecular dynamics simulation study on conformational behavior of Aβ (1-40) and Aβ (1-42) in water and methanol
-
Yang C, Zhu X, Li J, Chen K, (2009) Molecular dynamics simulation study on conformational behavior of Aβ (1-40) and Aβ (1-42) in water and methanol. J Mol Struc- THEOCHEM 907: 51-56.
-
(2009)
J Mol Struc - THEOCHEM
, vol.907
, pp. 51-56
-
-
Yang, C.1
Zhu, X.2
Li, J.3
Chen, K.4
-
38
-
-
70449411752
-
Translational, rotational and internal dynamics of amyloid β-peptides (Aβ40 and Aβ42) from molecular dynamics simulations
-
Bora RP, Prabhakar R, (2009) Translational, rotational and internal dynamics of amyloid β-peptides (Aβ40 and Aβ42) from molecular dynamics simulations. J Chem Phys 131: 155103.
-
(2009)
J Chem Phys
, vol.131
, pp. 155103
-
-
Bora, R.P.1
Prabhakar, R.2
-
39
-
-
61549084018
-
Structure of the Amyloid-β (1-42) Monomer Absorbed to Model Phospholipid Bilayers: A Molecular Dynamics Study
-
Davis CH, Berkowitz ML, (2009) Structure of the Amyloid-β (1-42) Monomer Absorbed to Model Phospholipid Bilayers: A Molecular Dynamics Study. Biophys J 96: 785-797.
-
(2009)
Biophys J
, vol.96
, pp. 785-797
-
-
Davis, C.H.1
Berkowitz, M.L.2
-
40
-
-
66749136907
-
Dynamic properties of pH-dependent structural organization of the amyloidogenic β-protein (1-40)
-
Rubinstein A, Lyubchenko YL, Sherman S, (2009) Dynamic properties of pH-dependent structural organization of the amyloidogenic β-protein (1-40). Prion 3: 31-43.
-
(2009)
Prion
, vol.3
, pp. 31-43
-
-
Rubinstein, A.1
Lyubchenko, Y.L.2
Sherman, S.3
-
41
-
-
67650079408
-
Probing the Effect of Amino-Terminal Truncation for Aβ1-40 Peptides
-
Takeda T, Klimov D, (2009) Probing the Effect of Amino-Terminal Truncation for Aβ1-40 Peptides. J Phys Chem B 113: 6692-6702.
-
(2009)
J Phys Chem B
, vol.113
, pp. 6692-6702
-
-
Takeda, T.1
Klimov, D.2
-
42
-
-
78650086243
-
Characterizing Amyloid-Beta Protein Misfolding From Molecular Dynamics Simulations With Explicit Water
-
Lee C, Ham S, (2011) Characterizing Amyloid-Beta Protein Misfolding From Molecular Dynamics Simulations With Explicit Water. J Comput Chem 32: 349-355.
-
(2011)
J Comput Chem
, vol.32
, pp. 349-355
-
-
Lee, C.1
Ham, S.2
-
43
-
-
82555173714
-
Amyloid-β peptide structure in aqueous solution varies with fragment size
-
Wise Scira O, Xu L, Kitahara T, Perry G, Coskuner O, (2011) Amyloid-β peptide structure in aqueous solution varies with fragment size. J Chem Phys 135: 205101-1-205101-13.
-
(2011)
J Chem Phys
, vol.135
, pp. 1-13
-
-
Wise, S.O.1
Xu, L.2
Kitahara, T.3
Perry, G.4
Coskuner, O.5
-
44
-
-
84859573155
-
Atomic-Level Characterization of the Ensemble of the Aβ (1-42) Monomer inWater Using Unbiased Molecular Dynamics Simulations and Spectral Algorithms
-
Sgourakis N, Merced-Serrano M, Boutsidis C, Drineas P, Du Z, et al. (2011) Atomic-Level Characterization of the Ensemble of the Aβ (1-42) Monomer inWater Using Unbiased Molecular Dynamics Simulations and Spectral Algorithms. J Mol Biol 368: 1448-1457.
-
(2011)
J Mol Biol
, vol.368
, pp. 1448-1457
-
-
Sgourakis, N.1
Merced-Serrano, M.2
Boutsidis, C.3
Drineas, P.4
Du, Z.5
-
45
-
-
80052231359
-
Homogeneous and Heterogeneous Tertiary Structure Ensembles of Amyloid-β Peptides
-
Ball KA, Phillips AH, Nerenberg PS, Fawzi NL, Wemmer DE, et al. (2011) Homogeneous and Heterogeneous Tertiary Structure Ensembles of Amyloid-β Peptides. Biochemistry 50: 7612-7628.
-
(2011)
Biochemistry
, vol.50
, pp. 7612-7628
-
-
Ball, K.A.1
Phillips, A.H.2
Nerenberg, P.S.3
Fawzi, N.L.4
Wemmer, D.E.5
-
46
-
-
84862909284
-
Investigating How Peptide Length and a Pathogenic Mutation Modify the Structural Ensemble of Amyloid Beta Monomer
-
Lin YS, Bowman GR, Beauchamp KA, Pande VS, (2012) Investigating How Peptide Length and a Pathogenic Mutation Modify the Structural Ensemble of Amyloid Beta Monomer. Biophys J 102: 315-324.
-
(2012)
Biophys J
, vol.102
, pp. 315-324
-
-
Lin, Y.S.1
Bowman, G.R.2
Beauchamp, K.A.3
Pande, V.S.4
-
47
-
-
43249091143
-
Structure and Dynamics of the Aβ (21-30) Peptide From the Interplay of NMR Experiments and Molecular Simulations
-
Fawzi N, Phillips A, Ruscio J, Doucleff M, Wemmer D, et al. (2008) Structure and Dynamics of the Aβ (21-30) Peptide From the Interplay of NMR Experiments and Molecular Simulations. J Am Chem Soc 130: 6145-6158.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 6145-6158
-
-
Fawzi, N.1
Phillips, A.2
Ruscio, J.3
Doucleff, M.4
Wemmer, D.5
-
48
-
-
33748791718
-
Hydration Thermodynamic Properties of Amino Acid Analogues: A Systematic Comparison of Biomolecular Force Fields and Water Models
-
Hess B, van der Vegt N, (2006) Hydration Thermodynamic Properties of Amino Acid Analogues: A Systematic Comparison of Biomolecular Force Fields and Water Models. J Phys Chem B 110: 17616-17626.
-
(2006)
J Phys Chem B
, vol.110
, pp. 17616-17626
-
-
Hess, B.1
van der Vegt, N.2
-
49
-
-
33644526613
-
Amyloid β-protein monomer structure: A computational and experimental study
-
Baumketner A, Bernstein SL, Wyttenbach T, Bitan G, Teplow DB, et al. (2006) Amyloid β-protein monomer structure: A computational and experimental study. Protein Sci 15: 420-428.
-
(2006)
Protein Sci
, vol.15
, pp. 420-428
-
-
Baumketner, A.1
Bernstein, S.L.2
Wyttenbach, T.3
Bitan, G.4
Teplow, D.B.5
-
50
-
-
84954358028
-
Amyloid β-Protein Monomer Folding: Free-Energy Surfaces Reveal Alloform-Specific Differences
-
Yang M, Teplow DB, (2008) Amyloid β-Protein Monomer Folding: Free-Energy Surfaces Reveal Alloform-Specific Differences. J Mol Biol 384: 450-464.
-
(2008)
J Mol Biol
, vol.384
, pp. 450-464
-
-
Yang, M.1
Teplow, D.B.2
-
51
-
-
77955790562
-
Comparing the folding free-energy landscapes of Aβ42 variants with different aggregation properties
-
Mitternacht S, Staneva I, Hard T, Irback A, (2010) Comparing the folding free-energy landscapes of Aβ42 variants with different aggregation properties. Proteins: Structure, Function, and Bioinformatics 78: 2600-2608.
-
(2010)
Proteins: Structure, Function, and Bioinformatics
, vol.78
, pp. 2600-2608
-
-
Mitternacht, S.1
Staneva, I.2
Hard, T.3
Irback, A.4
-
52
-
-
77957329138
-
Mapping Conformational Ensembles of Aβ Oligomers in Molecular Dynamics Simulations
-
Kim S, Takeda T, Klimov DK, (2010) Mapping Conformational Ensembles of Aβ Oligomers in Molecular Dynamics Simulations. Biophys J 99: 1949-1958.
-
(2010)
Biophys J
, vol.99
, pp. 1949-1958
-
-
Kim, S.1
Takeda, T.2
Klimov, D.K.3
-
53
-
-
79960904377
-
Does amino acid sequence determine the properties of Aβ dimer?
-
Lockhart C, Kim S, Kumar R, Klimov DK, (2011) Does amino acid sequence determine the properties of Aβ dimer? J Chem Phys 135: 035103.
-
(2011)
J Chem Phys
, vol.135
, pp. 035103
-
-
Lockhart, C.1
Kim, S.2
Kumar, R.3
Klimov, D.K.4
-
54
-
-
82555172375
-
Comparison of molecular dynamics simulation methods for amyloid β1-42 monomers containing D-aspartic acid residues for predicting retention times in chromatography
-
Oda A, Kobayashi K, Takahashi O, (2011) Comparison of molecular dynamics simulation methods for amyloid β1-42 monomers containing D-aspartic acid residues for predicting retention times in chromatography. J Chromatogr B 879: 3337-3343.
-
(2011)
J Chromatogr B
, vol.879
, pp. 3337-3343
-
-
Oda, A.1
Kobayashi, K.2
Takahashi, O.3
-
55
-
-
79958710594
-
Monte Carlo Study of the Formation and Conformational Properties of Dimers of Aβ42 Variants
-
Mitternacht S, Staneva I, Hard T, Irback A, (2011) Monte Carlo Study of the Formation and Conformational Properties of Dimers of Aβ42 Variants. J Mol Biol 410: 357-367.
-
(2011)
J Mol Biol
, vol.410
, pp. 357-367
-
-
Mitternacht, S.1
Staneva, I.2
Hard, T.3
Irback, A.4
-
56
-
-
33749832945
-
Elucidating Amyloid β-Protein Folding and Assembly: A Multidisciplinary Approach
-
Teplow DB, Lazo ND, Bitan G, Bernstein S, Wyttenbach T, et al. (2006) Elucidating Amyloid β-Protein Folding and Assembly: A Multidisciplinary Approach. Acc Chem Res 39: 635-645.
-
(2006)
Acc Chem Res
, vol.39
, pp. 635-645
-
-
Teplow, D.B.1
Lazo, N.D.2
Bitan, G.3
Bernstein, S.4
Wyttenbach, T.5
-
57
-
-
70349295278
-
Structure-neurotoxicity relationships of amyloid β-protein oligomers
-
Ono K, Condron MM, Teplow DB, (2009) Structure-neurotoxicity relationships of amyloid β-protein oligomers. Proc Natl Acad Sci USA 106: 14745-14750.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 14745-14750
-
-
Ono, K.1
Condron, M.M.2
Teplow, D.B.3
-
58
-
-
34250326780
-
Role of Electrostatic Interactions in Amyloid β-protein (Aβ) Oligomer Formation: A Discrete Molecular Dynamics Study
-
Yun S, Urbanc B, Cruz L, Bitan G, Teplow DB, et al. (2007) Role of Electrostatic Interactions in Amyloid β-protein (Aβ) Oligomer Formation: A Discrete Molecular Dynamics Study. Biophys J 92: 4064-4077.
-
(2007)
Biophys J
, vol.92
, pp. 4064-4077
-
-
Yun, S.1
Urbanc, B.2
Cruz, L.3
Bitan, G.4
Teplow, D.B.5
-
59
-
-
78650331032
-
The Effect of Alzheimer's Aβ Aggregation State on the Permeation of Biomimetic Lipid Vesicles
-
Williams T, Day I, Serpell L, (2010) The Effect of Alzheimer's Aβ Aggregation State on the Permeation of Biomimetic Lipid Vesicles. Langmuir 26: 17260-17268.
-
(2010)
Langmuir
, vol.26
, pp. 17260-17268
-
-
Williams, T.1
Day, I.2
Serpell, L.3
-
60
-
-
0141480850
-
Mechanism for the β-Helix to β-Hairpin Transition
-
Ding F, Borreguero JM, Buldyrev SV, Stanley HE, Dokholyan NV, (2003) Mechanism for the β-Helix to β-Hairpin Transition. Proteins: Structure, Function, and Genetics 53: 220-228.
-
(2003)
Proteins: Structure, Function, and Genetics
, vol.53
, pp. 220-228
-
-
Ding, F.1
Borreguero, J.M.2
Buldyrev, S.V.3
Stanley, H.E.4
Dokholyan, N.V.5
-
61
-
-
33749601705
-
Ab initio Discrete Molecular Dynamics Approach to Protein Folding and Aggregation
-
Urbanc B, Borreguero JM, Cruz L, Stanley HE, (2006) Ab initio Discrete Molecular Dynamics Approach to Protein Folding and Aggregation. Methods Enzymol 412: 314-338.
-
(2006)
Methods Enzymol
, vol.412
, pp. 314-338
-
-
Urbanc, B.1
Borreguero, J.M.2
Cruz, L.3
Stanley, H.E.4
-
62
-
-
79251567055
-
Crystal Structure of the Amyloid-β p3 Fragment Provides a Model for Oligomer Formation in Alzheimer's Disease
-
Streltsov V, Varghese J, Masters C, Nuttall S, (2011) Crystal Structure of the Amyloid-β p3 Fragment Provides a Model for Oligomer Formation in Alzheimer's Disease. J Neurosci 31: 1419-1426.
-
(2011)
J Neurosci
, vol.31
, pp. 1419-1426
-
-
Streltsov, V.1
Varghese, J.2
Masters, C.3
Nuttall, S.4
-
63
-
-
0032483035
-
Solution Structure of Amyloid β-Peptide(1-40) in a Water-Micelle Environment. Is the Membrane-Spanning Domain Where We Think It Is?
-
Coles M, Bicknell W, Watson AA, Fairlie DP, Craik DJ, (1998) Solution Structure of Amyloid β-Peptide(1-40) in a Water-Micelle Environment. Is the Membrane-Spanning Domain Where We Think It Is? Biochemistry 37: 11064-11077.
-
(1998)
Biochemistry
, vol.37
, pp. 11064-11077
-
-
Coles, M.1
Bicknell, W.2
Watson, A.A.3
Fairlie, D.P.4
Craik, D.J.5
-
64
-
-
0036438914
-
Solution structure of the Alzheimer amyloid β-peptide (1-42) in an apolar microenvironment: Similarity with a virus fusion domain
-
Crescenzi O, Tomaselli S, Guerrini R, Salvadori S, D'Ursi AM, et al. (2002) Solution structure of the Alzheimer amyloid β-peptide (1-42) in an apolar microenvironment: Similarity with a virus fusion domain. Eur J Biochem 269: 5642-5648.
-
(2002)
Eur J Biochem
, vol.269
, pp. 5642-5648
-
-
Crescenzi, O.1
Tomaselli, S.2
Guerrini, R.3
Salvadori, S.4
D'Ursi, A.M.5
-
65
-
-
0035812658
-
Identification and Characterization of Key Kinetic Intermediates in Amyloid β-Protein Fibrillogenesis
-
Kirkitadze MD, Condron MM, Teplow DB, (2001) Identification and Characterization of Key Kinetic Intermediates in Amyloid β-Protein Fibrillogenesis. J Mol Biol 312: 1103-1119.
-
(2001)
J Mol Biol
, vol.312
, pp. 1103-1119
-
-
Kirkitadze, M.D.1
Condron, M.M.2
Teplow, D.B.3
-
66
-
-
0033987195
-
Temperature-dependent β-sheet formation in β-amyloid Aβ (1-40) peptide in water: uncoupling β-structure folding from aggregation
-
Gursky O, Aleshkov S, (2000) Temperature-dependent β-sheet formation in β-amyloid Aβ (1-40) peptide in water: uncoupling β-structure folding from aggregation. Biochim Biophys Acta 1476: 93-102.
-
(2000)
Biochim Biophys Acta
, vol.1476
, pp. 93-102
-
-
Gursky, O.1
Aleshkov, S.2
-
67
-
-
0344962370
-
Validation of an All-Atom Protein Force Field: From Dipeptides to Larger Peptides
-
Gnanakaran S, Garcia AE, (2003) Validation of an All-Atom Protein Force Field: From Dipeptides to Larger Peptides. J Phys Chem B 107: 12555-12557.
-
(2003)
J Phys Chem B
, vol.107
, pp. 12555-12557
-
-
Gnanakaran, S.1
Garcia, A.E.2
-
68
-
-
64549131279
-
ABSINTH: A new continuum solvation model for simulations of polypeptides in aqueous solutions
-
Vitalis A, Pappu R, (2009) ABSINTH: A new continuum solvation model for simulations of polypeptides in aqueous solutions. J Comput Chem 30: 673-699.
-
(2009)
J Comput Chem
, vol.30
, pp. 673-699
-
-
Vitalis, A.1
Pappu, R.2
-
69
-
-
74949106813
-
Intrinsic Propensities of Amino Acid Residues in GxG Peptides Inferred from Amide I' Band Profiles and NMR Scalar Coupling Constants
-
Hagarman A, Measey TJ, Mathieu D, Schwalbe H, Schweitzer-Stenner R, (2010) Intrinsic Propensities of Amino Acid Residues in GxG Peptides Inferred from Amide I' Band Profiles and NMR Scalar Coupling Constants. J Am Chem Soc 132: 540-551.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 540-551
-
-
Hagarman, A.1
Measey, T.J.2
Mathieu, D.3
Schwalbe, H.4
Schweitzer-Stenner, R.5
-
70
-
-
79954518426
-
Optimizing Protein-Solvent Force Fields to Reproduce Intrinsic Conformational Preferences of Model Peptides
-
Nerenberg PS, Head-Gordon T, (2011) Optimizing Protein-Solvent Force Fields to Reproduce Intrinsic Conformational Preferences of Model Peptides. J Chem Theory Comput 7: 1220-1230.
-
(2011)
J Chem Theory Comput
, vol.7
, pp. 1220-1230
-
-
Nerenberg, P.S.1
Head-Gordon, T.2
-
71
-
-
69549145714
-
Interpeptide interactions induce helix to strand structural transition in Aβ peptides
-
Takeda T, Klimov D, (2009) Interpeptide interactions induce helix to strand structural transition in Aβ peptides. Proteins 77: 1-13.
-
(2009)
Proteins
, vol.77
, pp. 1-13
-
-
Takeda, T.1
Klimov, D.2
-
72
-
-
0037168655
-
A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR
-
Petkova AT, Ishii Y, Balbach JJ, Antzutkin ON, Leapman RD, et al. (2002) A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR. Proc Natl Acad Sci USA 99: 16742-16747.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16742-16747
-
-
Petkova, A.T.1
Ishii, Y.2
Balbach, J.J.3
Antzutkin, O.N.4
Leapman, R.D.5
-
73
-
-
30744433878
-
Experimental Constraints on Quaternary Structure in Alzheimer's β-Amyloid Fibrils
-
Petkova AT, Yau WM, Tycko R, (2006) Experimental Constraints on Quaternary Structure in Alzheimer's β-Amyloid Fibrils. Biochemistry 45: 498-512.
-
(2006)
Biochemistry
, vol.45
, pp. 498-512
-
-
Petkova, A.T.1
Yau, W.M.2
Tycko, R.3
-
74
-
-
17644397372
-
Aβ40-Lactam(D23/K28) Models a Conformation Highly Favorable for Nucleation of Amyloid
-
Sciarretta KL, Gordon DJ, Petkova AT, Tycko R, Meredith SC, (2005) Aβ40-Lactam(D23/K28) Models a Conformation Highly Favorable for Nucleation of Amyloid. Biochemistry 44: 6003-6014.
-
(2005)
Biochemistry
, vol.44
, pp. 6003-6014
-
-
Sciarretta, K.L.1
Gordon, D.J.2
Petkova, A.T.3
Tycko, R.4
Meredith, S.C.5
-
76
-
-
80053589341
-
Membrane and surface interactions of Alzheimer's Aβ peptide - insights into the mechanism of cytotoxicity
-
Williams T, Serpell L, (2011) Membrane and surface interactions of Alzheimer's Aβ peptide - insights into the mechanism of cytotoxicity. FEBS J 278: 3905-3917.
-
(2011)
FEBS J
, vol.278
, pp. 3905-3917
-
-
Williams, T.1
Serpell, L.2
-
77
-
-
73249128637
-
Site-specific modification of Alzheimer's peptides by cholesterol oxidation products enhances aggregation energetics and neurotoxicity
-
Usui K, Hulleman JD, Paulsson JF, Siegel SJ, Powers ET, et al. (2009) Site-specific modification of Alzheimer's peptides by cholesterol oxidation products enhances aggregation energetics and neurotoxicity. Proc Natl Acad Sci USA 106: 18563-18568.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 18563-18568
-
-
Usui, K.1
Hulleman, J.D.2
Paulsson, J.F.3
Siegel, S.J.4
Powers, E.T.5
-
78
-
-
80055020556
-
Lysine-Specific Molecular Tweezers are Broad-Spectrum Inhibitors of Assembly and Toxicity of Amyloid Proteins
-
Sinha S, Lopes DHJ, Du Z, Pang ES, Shanmugam A, et al. (2011) Lysine-Specific Molecular Tweezers are Broad-Spectrum Inhibitors of Assembly and Toxicity of Amyloid Proteins. J Am Chem Soc 133: 16958-16969.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 16958-16969
-
-
Sinha, S.1
Lopes, D.H.J.2
Du, Z.3
Pang, E.S.4
Shanmugam, A.5
-
79
-
-
37249017468
-
Systematic In Vivo Analysis of the Intrinsic Determinants of Amyloid β Pathogenicity
-
Luheshi LM, Tartaglia GG, Brorsson AC, Pawar AP, Watson IE, et al. (2007) Systematic In Vivo Analysis of the Intrinsic Determinants of Amyloid β Pathogenicity. PLoS Biol 5: e290.
-
(2007)
PLoS Biol
, vol.5
-
-
Luheshi, L.M.1
Tartaglia, G.G.2
Brorsson, A.C.3
Pawar, A.P.4
Watson, I.E.5
-
80
-
-
79955044494
-
Soluble amyloid β-protein dimmers isolated from Alzheimer cortex directly induce tau hyperphosphorylation and neuritic degeneration
-
Jin M, Shepardson N, Yang T, Chen G, Walsh D, et al. (2011) Soluble amyloid β-protein dimmers isolated from Alzheimer cortex directly induce tau hyperphosphorylation and neuritic degeneration. Proc Natl Acad Sci USA 108: 5819-5824.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 5819-5824
-
-
Jin, M.1
Shepardson, N.2
Yang, T.3
Chen, G.4
Walsh, D.5
-
81
-
-
79953081933
-
Coarse-grained models for protein aggregation
-
Wu C, Shea JE, (2011) Coarse-grained models for protein aggregation. Curr Opin Struc Biol pp. 209-220.
-
(2011)
Curr Opin Struc Biol
, pp. 209-220
-
-
Wu, C.1
Shea, J.E.2
-
83
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl E, Hess B, van der Spoel D, (2001) GROMACS 3.0: A package for molecular simulation and trajectory analysis. J Mol Model 7: 306-317.
-
(2001)
J Mol Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
84
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
Spoel DVD, Lindahl E, Hess B, Groenhof G, Mark AE, et al. (2005) GROMACS: fast, flexible, and free. J Comput Chem 26: 1701-1718.
-
(2005)
J Comput Chem
, vol.26
, pp. 1701-1718
-
-
Spoel, D.V.D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
-
85
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess B, Kutzner C, van der Spoel D, Lindahl E, (2008) GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation. J Chem Theory Comput 4: 435-447.
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
van der Spoel, D.3
Lindahl, E.4
-
86
-
-
0029912748
-
Development and Testing of the OPLS All- Atom Force Field on Conformational Energetics and Properties of Organic Liquids
-
Jorgensen WL, Maxwell DS, Tirado-Rives J, (1996) Development and Testing of the OPLS All- Atom Force Field on Conformational Energetics and Properties of Organic Liquids. J Am Chem Soc 118: 11225-11236.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
87
-
-
0035913529
-
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
-
Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL, (2001) Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides. J Phys Chem B 105: 6474-6487.
-
(2001)
J Phys Chem B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
89
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML, (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79: 926.
-
(1983)
J Chem Phys
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
91
-
-
33846086933
-
Canonical sampling through velocity rescaling
-
Bussi G, Donadio D, Parrinello M, (2007) Canonical sampling through velocity rescaling. J Chem Phys 126: 014101.
-
(2007)
J Chem Phys
, vol.126
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
92
-
-
0019707626
-
Polymorphic transitions in single crystals: A new molecular dynamics method
-
Parrinello M, Rahman A, (1981) Polymorphic transitions in single crystals: A new molecular dynamics method. J Appl Phys 52: 7182.
-
(1981)
J Appl Phys
, vol.52
, pp. 7182
-
-
Parrinello, M.1
Rahman, A.2
-
93
-
-
0029619259
-
Knowledge-Based Protein Secondary Structure Assignment
-
Frishman D, Argos P, (1995) Knowledge-Based Protein Secondary Structure Assignment. Proteins: Structure, Function, and Genetics 23: 566-579.
-
(1995)
Proteins: Structure, Function, and Genetics
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
|