-
1
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Science
-
Domon, B., Aebersold, R., Mass spectrometry and protein analysis. Science 2006, 312, 212-217.
-
(2006)
, vol.312
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
2
-
-
70350412263
-
Revealing promiscuous drug-target interactions by chemical proteomics
-
Today
-
Bantscheff, M., Scholten, A., Heck, A. J., Revealing promiscuous drug-target interactions by chemical proteomics. Drug Discov. Today 2009, 14, 1021-1029.
-
(2009)
Drug Discov.
, vol.14
, pp. 1021-1029
-
-
Bantscheff, M.1
Scholten, A.2
Heck, A.J.3
-
3
-
-
69249136243
-
Target profiling of small molecules by chemical proteomics
-
Rix, U., Superti-Furga, G., Target profiling of small molecules by chemical proteomics. Nat. Chem. Biol. 2009, 5, 616-624.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 616-624
-
-
Rix, U.1
Superti-Furga, G.2
-
4
-
-
2442465034
-
Prospects for productivity
-
Booth, B., Zemmel, R., Prospects for productivity. Nat. Rev. Drug Discov. 2004, 3, 451-456.
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, pp. 451-456
-
-
Booth, B.1
Zemmel, R.2
-
5
-
-
15044349115
-
The efficiency of multi-target drugs: the network approach might help drug design
-
Csermely, P., Agoston, V., Pongor, S., The efficiency of multi-target drugs: the network approach might help drug design. Trends Pharmacol. Sci. 2005, 26, 178-182.
-
(2005)
Trends Pharmacol. Sci.
, vol.26
, pp. 178-182
-
-
Csermely, P.1
Agoston, V.2
Pongor, S.3
-
6
-
-
35748935235
-
Proteins, drug targets and the mechanisms they control: the simple truth about complex networks
-
Araujo, R. P., Liotta, L. A., Petricoin, E. F., Proteins, drug targets and the mechanisms they control: the simple truth about complex networks. Nat. Rev. Drug Discov. 2007, 6, 871-880.
-
(2007)
Nat. Rev. Drug Discov.
, vol.6
, pp. 871-880
-
-
Araujo, R.P.1
Liotta, L.A.2
Petricoin, E.F.3
-
7
-
-
12144258457
-
Multicomponent therapeutics for networked systems
-
Keith, C. T., Borisy, A. A., Stockwell, B. R., Multicomponent therapeutics for networked systems. Nat. Rev. Drug Discov. 2005, 4, 71-78.
-
(2005)
Nat. Rev. Drug Discov.
, vol.4
, pp. 71-78
-
-
Keith, C.T.1
Borisy, A.A.2
Stockwell, B.R.3
-
8
-
-
37049014938
-
Chemical proteomic profiles of the BCR-ABL inhibitors imatinib, nilotinib, and dasatinib reveal novel kinase and nonkinase targets
-
Rix, U., Hantschel, O., Durnberger, G., Remsing Rix, L. L. et al., Chemical proteomic profiles of the BCR-ABL inhibitors imatinib, nilotinib, and dasatinib reveal novel kinase and nonkinase targets. Blood 2007, 110, 4055-4063.
-
(2007)
Blood
, vol.110
, pp. 4055-4063
-
-
Rix, U.1
Hantschel, O.2
Durnberger, G.3
Remsing Rix, L.L.4
-
9
-
-
7444253428
-
Systems biology and new technologies enable predictive and preventative medicine
-
Hood, L., Heath, J. R., Phelps, M. E., Lin, B., Systems biology and new technologies enable predictive and preventative medicine. Science 2004, 306, 640-643.
-
(2004)
Science
, vol.306
, pp. 640-643
-
-
Hood, L.1
Heath, J.R.2
Phelps, M.E.3
Lin, B.4
-
10
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin, A.-C., Aloy, P., Grandi, P., Krause, R. et al., Proteome survey reveals modularity of the yeast cell machinery. Nature 2006, 440, 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.-C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
-
11
-
-
0024472603
-
A receptor for the immunosuppressant FK506 is a cis-trans peptidyl-prolyl isomerase
-
Harding, M. W., Galat, A., Uehling, D. E., Schreiber, S. L., A receptor for the immunosuppressant FK506 is a cis-trans peptidyl-prolyl isomerase. Nature 1989, 341, 758-760.
-
(1989)
Nature
, vol.341
, pp. 758-760
-
-
Harding, M.W.1
Galat, A.2
Uehling, D.E.3
Schreiber, S.L.4
-
12
-
-
0014348411
-
Selective enzyme purification by affinity chromatography
-
USA
-
Cuatrecasas, P., Wilchek, M., Anfinsen, C. B., Selective enzyme purification by affinity chromatography. Proc. Natl. Acad. Sci. USA 1968, 61, 636-643.
-
(1968)
Proc. Natl. Acad. Sci.
, vol.61
, pp. 636-643
-
-
Cuatrecasas, P.1
Wilchek, M.2
Anfinsen, C.B.3
-
13
-
-
34948875686
-
Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors
-
Bantscheff, M., Eberhard, D., Abraham, Y., Bastuck, S. et al., Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors. Nat. Biotechnol. 2007, 25, 1035-1044.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1035-1044
-
-
Bantscheff, M.1
Eberhard, D.2
Abraham, Y.3
Bastuck, S.4
-
14
-
-
79959493188
-
In situ kinase profiling reveals functionally relevant properties of native kinases
-
Patricelli, M. P., Nomanbhoy, T. K., Wu, J., Brown, H. et al., In situ kinase profiling reveals functionally relevant properties of native kinases. Chem. Biol. 2011, 18, 699-710.
-
(2011)
Chem. Biol.
, vol.18
, pp. 699-710
-
-
Patricelli, M.P.1
Nomanbhoy, T.K.2
Wu, J.3
Brown, H.4
-
15
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V., Blagoev, B., Gnad, F., Macek, B. et al., Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127, 635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
-
16
-
-
51249099557
-
The chemokine interleukin-8 and the surface activation protein CD69 are markers for Bcr-Abl activity in chronic myeloid leukemia
-
Hantschel, O., Gstoettenbauer, A., Colinge, J., Kaupe, I. et al., The chemokine interleukin-8 and the surface activation protein CD69 are markers for Bcr-Abl activity in chronic myeloid leukemia. Mol. Oncol. 2008, 2, 272-281.
-
(2008)
Mol. Oncol.
, vol.2
, pp. 272-281
-
-
Hantschel, O.1
Gstoettenbauer, A.2
Colinge, J.3
Kaupe, I.4
-
17
-
-
72449196261
-
Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics
-
Pan, C., Olsen, J. V., Daub, H., Mann, M., Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics. Mol. Cell. Proteomics 2009, 8, 2796-2808.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2796-2808
-
-
Pan, C.1
Olsen, J.V.2
Daub, H.3
Mann, M.4
-
18
-
-
77949848665
-
A chemical and phosphoproteomic characterization of dasatinib action in lung cancer
-
Li, J., Rix, U., Fang, B., Bai, Y. et al., A chemical and phosphoproteomic characterization of dasatinib action in lung cancer. Nat. Chem. Biol. 2010, 6, 291-299.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 291-299
-
-
Li, J.1
Rix, U.2
Fang, B.3
Bai, Y.4
-
19
-
-
80054000380
-
An integrated chemical biology approach identifies specific vulnerability of Ewing's sarcoma to combined inhibition of Aurora kinases A and B.
-
Winter, G. E., Rix, U., Lissat, A., Stukalov, A. et al., An integrated chemical biology approach identifies specific vulnerability of Ewing's sarcoma to combined inhibition of Aurora kinases A and B. Mol. Cancer Ther. 2011.
-
(2011)
Mol. Cancer Ther.
-
-
Winter, G.E.1
Rix, U.2
Lissat, A.3
Stukalov, A.4
-
20
-
-
80054977424
-
Chemoproteomics-based design of potent LRRK2- selective lead compounds that attenuate Parkinson's disease-related toxicity in human neurons
-
Ramsden, N., Perrin, J., Ren, Z., Lee, B. D. et al., Chemoproteomics-based design of potent LRRK2- selective lead compounds that attenuate Parkinson's disease-related toxicity in human neurons. ACS Chem. Biol. 2011.
-
(2011)
ACS Chem. Biol.
-
-
Ramsden, N.1
Perrin, J.2
Ren, Z.3
Lee, B.D.4
-
21
-
-
46749145391
-
An unbiased evaluation of CK2 inhibitors by chemoproteomics: characterization of inhibitor effects on CK2 and identification of novel inhibitor targets
-
Duncan, J. S., Gyenis, L., Lenehan, J., Bretner, M. et al., An unbiased evaluation of CK2 inhibitors by chemoproteomics: characterization of inhibitor effects on CK2 and identification of novel inhibitor targets. Mol. Cell. Proteomics 2008, 7, 1077-1088.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1077-1088
-
-
Duncan, J.S.1
Gyenis, L.2
Lenehan, J.3
Bretner, M.4
-
22
-
-
79952477411
-
2, 4-Diaminopyrimidines as potent inhibitors of Trypanosoma brucei and identification of molecular targets by a chemical proteomics approach
-
Mercer, L., Bowling, T., Perales, J., Freeman, J. et al., 2, 4-Diaminopyrimidines as potent inhibitors of Trypanosoma brucei and identification of molecular targets by a chemical proteomics approach. PLoS Negl. Trop. Dis. 2011, 5, e956.
-
(2011)
PLoS Negl. Trop. Dis.
, vol.5
-
-
Mercer, L.1
Bowling, T.2
Perales, J.3
Freeman, J.4
-
23
-
-
77955444211
-
Application of chemoproteomics to drug discovery: identification of a clinical candidate targeting hsp90
-
Fadden, P., Huang, K. H., Veal, J. M., Steed, P. M. et al., Application of chemoproteomics to drug discovery: identification of a clinical candidate targeting hsp90. Chem. Biol. 2010, 17, 686-694.
-
(2010)
Chem. Biol.
, vol.17
, pp. 686-694
-
-
Fadden, P.1
Huang, K.H.2
Veal, J.M.3
Steed, P.M.4
-
24
-
-
56749183256
-
Identification of proteins binding to decursinol by chemical proteomics
-
Kang, H. J., Yoon, T. S., Jeong, D. G., Kim, Y. et al., Identification of proteins binding to decursinol by chemical proteomics. J. Microbiol. Biotechnol. 2008, 18, 1427-1430.
-
(2008)
J. Microbiol. Biotechnol.
, vol.18
, pp. 1427-1430
-
-
Kang, H.J.1
Yoon, T.S.2
Jeong, D.G.3
Kim, Y.4
-
25
-
-
77953696907
-
Chemical proteomics identifies Nampt as the target of CB30865, an orphan cytotoxic compound
-
Fleischer, T. C., Murphy, B. R., Flick, J. S., Terry-Lorenzo, R. T. et al., Chemical proteomics identifies Nampt as the target of CB30865, an orphan cytotoxic compound. Chem. Biol. 2010, 17, 659-664.
-
(2010)
Chem. Biol.
, vol.17
, pp. 659-664
-
-
Fleischer, T.C.1
Murphy, B.R.2
Flick, J.S.3
Terry-Lorenzo, R.T.4
-
26
-
-
62549166213
-
Global target profile of the kinase inhibitor bosutinib in primary chronic myeloid leukemia cells
-
Remsing Rix, L. L., Rix, U., Colinge, J., Hantschel, O. et al., Global target profile of the kinase inhibitor bosutinib in primary chronic myeloid leukemia cells. Leukemia 2009, 23, 477-485.
-
(2009)
Leukemia
, vol.23
, pp. 477-485
-
-
Remsing Rix, L.L.1
Rix, U.2
Colinge, J.3
Hantschel, O.4
-
27
-
-
70349972376
-
Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: an application to drug affinity chromatography
-
Fernbach, N. V., Planyavsky, M., Muller, A., Breitwieser, F. P. et al., Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: an application to drug affinity chromatography. J. Proteome Res. 2009, 8, 4753-4765.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4753-4765
-
-
Fernbach, N.V.1
Planyavsky, M.2
Muller, A.3
Breitwieser, F.P.4
-
28
-
-
77951650200
-
Role of spectral counting in quantitative proteomics
-
Lundgren, D. H., Hwang, S. I., Wu, L., Han, D. K., Role of spectral counting in quantitative proteomics. Expert Rev. Proteomics 2010, 7, 39-53.
-
(2010)
Expert Rev. Proteomics
, vol.7
, pp. 39-53
-
-
Lundgren, D.H.1
Hwang, S.I.2
Wu, L.3
Han, D.K.4
-
29
-
-
66149095910
-
Charting the molecular network of the drug target Bcr-Abl
-
USA
-
Brehme, M., Hantschel, O., Colinge, J., Kaupe, I. et al., Charting the molecular network of the drug target Bcr-Abl. Proc. Natl. Acad. Sci. USA 2009, 106, 7414-7419.
-
(2009)
Proc. Natl. Acad. Sci.
, vol.106
, pp. 7414-7419
-
-
Brehme, M.1
Hantschel, O.2
Colinge, J.3
Kaupe, I.4
-
30
-
-
58149299336
-
Significance analysis of spectral count data in label-free shotgun proteomics
-
Choi, H., Fermin, D., Nesvizhskii, A. I., Significance analysis of spectral count data in label-free shotgun proteomics. Mol. Cell. Proteomics 2008, 7, 2373-2385.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 2373-2385
-
-
Choi, H.1
Fermin, D.2
Nesvizhskii, A.I.3
-
31
-
-
74249085402
-
A comprehensive target selectivity survey of the BCR-ABL kinase inhibitor INNO-406 by kinase profiling and chemical proteomics in chronic myeloid leukemia cells
-
Rix, U., Remsing Rix, L. L., Terker, A. S., Fernbach, N. V. et al., A comprehensive target selectivity survey of the BCR-ABL kinase inhibitor INNO-406 by kinase profiling and chemical proteomics in chronic myeloid leukemia cells. Leukemia 2009, 24, 44-50.
-
(2009)
Leukemia
, vol.24
, pp. 44-50
-
-
Rix, U.1
Remsing Rix, L.L.2
Terker, A.S.3
Fernbach, N.V.4
-
32
-
-
58149305794
-
An empirical framework for binary interactome mapping
-
Venkatesan, K., Rual, J. F., Vazquez, A., Stelzl, U. et al., An empirical framework for binary interactome mapping. Nat. Methods 2009, 6, 83-90.
-
(2009)
Nat. Methods
, vol.6
, pp. 83-90
-
-
Venkatesan, K.1
Rual, J.F.2
Vazquez, A.3
Stelzl, U.4
-
33
-
-
23444452564
-
Probabilistic model of the human protein-protein interaction network
-
Rhodes, D. R., Tomlins, S. A., Varambally, S., Mahavisno, V. et al., Probabilistic model of the human protein-protein interaction network. Nat. Biotechnol. 2005, 23, 951-959.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 951-959
-
-
Rhodes, D.R.1
Tomlins, S.A.2
Varambally, S.3
Mahavisno, V.4
-
34
-
-
79952396960
-
Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes
-
Bantscheff, M., Hopf, C., Savitski, M. M., Dittmann, A. et al., Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes. Nat. Biotechnol. 2011, 29, 255-265.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 255-265
-
-
Bantscheff, M.1
Hopf, C.2
Savitski, M.M.3
Dittmann, A.4
-
35
-
-
0033593013
-
Activity-based protein profiling: the serine hydrolases
-
USA
-
Liu, Y., Patricelli, M. P., Cravatt, B. F., Activity-based protein profiling: the serine hydrolases. Proc. Natl. Acad. Sci. USA 1999, 96, 14694-14699.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 14694-14699
-
-
Liu, Y.1
Patricelli, M.P.2
Cravatt, B.F.3
-
36
-
-
0001426432
-
Chemical strategies for functional proteomics
-
Adam, G. C., Sorensen, E. J., Cravatt, B. F., Chemical strategies for functional proteomics. Mol. Cell. Proteomics 2002, 1, 781-790.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 781-790
-
-
Adam, G.C.1
Sorensen, E.J.2
Cravatt, B.F.3
-
37
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B. et al., Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 2004, 3, 1154-1169.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
-
38
-
-
12444345515
-
Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A., Schafer, J., Kuhn, K., Kienle, S. et al., Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 2003, 75, 1895-1904.
-
(2003)
Anal. Chem.
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
-
39
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
-
40
-
-
79958198057
-
General statistical modeling of data from protein relative expression isobaric tags
-
Breitwieser, F. P., Muller, A., Dayon, L., Kocher, T. et al., General statistical modeling of data from protein relative expression isobaric tags. J. Proteome Res. 2011, 10, 2758-2766.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 2758-2766
-
-
Breitwieser, F.P.1
Muller, A.2
Dayon, L.3
Kocher, T.4
-
41
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., Mann, M., MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26, 1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
42
-
-
70349624519
-
Proteomics strategy for quantitative protein interaction profiling in cell extracts
-
Sharma, K., Weber, C., Bairlein, M., Greff, Z. et al., Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nat. Methods 2009, 6, 741-744.
-
(2009)
Nat. Methods
, vol.6
, pp. 741-744
-
-
Sharma, K.1
Weber, C.2
Bairlein, M.3
Greff, Z.4
-
43
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa, M., Araki, M., Goto, S., Hattori, M. et al., KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008, 36, D480-D484.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
-
44
-
-
58149186477
-
PID: the Pathway Interaction Database
-
Schaefer, C. F., Anthony, K., Krupa, S., Buchoff, J. et al., PID: the Pathway Interaction Database. Nucleic Acids Res. 2009, 37, D674-D679.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Schaefer, C.F.1
Anthony, K.2
Krupa, S.3
Buchoff, J.4
-
45
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Gene ontology: tool for the unification of biology. Gene Ontol. Consortium Nat. Genet. 2000, 25, 25-29.
-
(2000)
Gene Ontol. Consortium Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
-
46
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da, W., Sherman, B. T., Lempicki, R. A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4, 44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
47
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
USA
-
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S. et al., Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 2005, 102, 15545-15550.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
-
48
-
-
84885402681
-
-
Chen, L., Zhang, X., Shen, B., Wu, L., Wang, Y. (Eds.), 4th International Conference on Computational Systems Biology, World Publishing Company, Suzhou, China
-
Colinge, J., Rix, U., Superti-Furga, G., in: Chen, L., Zhang, X., Shen, B., Wu, L., Wang, Y. (Eds.), 4th International Conference on Computational Systems Biology, World Publishing Company, Suzhou, China 2010, pp. 305-313.
-
(2010)
, pp. 305-313
-
-
Colinge, J.1
Rix, U.2
Superti-Furga, G.3
-
49
-
-
0001677717
-
Controlling the false discovery arte: a practical and powerful approach to multiple testing
-
Benjamini, Y., Hochberg, Y., Controlling the false discovery arte: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 1995, 57, 289-300.
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
50
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
Alexa, A., Rahnenfuhrer, J., Lengauer, T., Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 2006, 22, 1600-1607.
-
(2006)
Bioinformatics
, vol.22
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenfuhrer, J.2
Lengauer, T.3
-
51
-
-
58049215467
-
A novel signaling pathway impact analysis
-
Tarca, A. L., Draghici, S., Khatri, P., Hassan, S. S. et al., A novel signaling pathway impact analysis. Bioinformatics 2009, 25, 75-82.
-
(2009)
Bioinformatics
, vol.25
, pp. 75-82
-
-
Tarca, A.L.1
Draghici, S.2
Khatri, P.3
Hassan, S.S.4
-
52
-
-
78649921505
-
Extending pathways and processes using molecular interaction networks to analyse cancer genome data. Biomed. Chromatogr
-
Glaab, E., Baudot, A., Krasnogor, N., Valencia, A., Extending pathways and processes using molecular interaction networks to analyse cancer genome data. Biomed. Chromatogr. Bioinformatics 2010, 11, 597.
-
(2010)
Bioinformatics
, vol.11
, pp. 597
-
-
Glaab, E.1
Baudot, A.2
Krasnogor, N.3
Valencia, A.4
-
53
-
-
33846047770
-
IntAct - open source resource for molecular interaction data
-
Kerrien, S., Alam-Faruque, Y., Aranda, B., Bancarz, I. et al., IntAct - open source resource for molecular interaction data. Nucleic Acids Res. 2007, 35, D561-D565.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
-
54
-
-
57549096908
-
Searching the MINT database for protein interaction information
-
Chapter 8, Unit 8.5.
-
Cesareni, G., Chatr-aryamontri, A., Licata, L., Ceol, A., Searching the MINT database for protein interaction information. Curr. Protoc. Bioinformatics 2008. Chapter 8, Unit 8.5.
-
(2008)
Curr. Protoc. Bioinformatics
-
-
Cesareni, G.1
Chatr-aryamontri, A.2
Licata, L.3
Ceol, A.4
-
55
-
-
38549173606
-
The BioGRID Interaction Database: 2008 update
-
Breitkreutz, B. J., Stark, C., Reguly, T., Boucher, L. et al., The BioGRID Interaction Database: 2008 update. Nucleic Acids Res. 2008, 36, D637-D640.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Breitkreutz, B.J.1
Stark, C.2
Reguly, T.3
Boucher, L.4
-
56
-
-
51049113607
-
InnateDB: facilitating systems-level analyses of the mammalian innate immune response
-
Lynn, D. J., Winsor, G. L., Chan, C., Richard, N. et al., InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Mol. Syst. Biol. 2008, 4, 218.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 218
-
-
Lynn, D.J.1
Winsor, G.L.2
Chan, C.3
Richard, N.4
-
57
-
-
75549085083
-
Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology
-
Prasad, T. S., Kandasamy, K., Pandey, A., Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology. Methods Mol. Biol. 2009, 577, 67-79.
-
(2009)
Methods Mol. Biol.
, vol.577
, pp. 67-79
-
-
Prasad, T.S.1
Kandasamy, K.2
Pandey, A.3
-
58
-
-
78649683041
-
A computational approach to analyze the mechanism of action of the kinase inhibitor bafetinib
-
Burkard, T. R., Rix, U., Breitwieser, F. P., Superti-Furga, G., Colinge, J., A computational approach to analyze the mechanism of action of the kinase inhibitor bafetinib. PLoS Comput. Biol. 2010, 6, e1001001.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Burkard, T.R.1
Rix, U.2
Breitwieser, F.P.3
Superti-Furga, G.4
Colinge, J.5
-
59
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong, H., Tombor, B., Albert, R., Oltvai, Z. N., Barabasi, A. L., The large-scale organization of metabolic networks. Nature 2000, 407, 651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
60
-
-
41549139527
-
Walking the interactome for prioritization of candidate disease genes
-
Kohler, S., Bauer, S., Horn, D., Robinson, P. N.,Walking the interactome for prioritization of candidate disease genes. Am. J. Hum. Genet. 2008, 82, 949-958.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 949-958
-
-
Kohler, S.1
Bauer, S.2
Horn, D.3
Robinson, P.N.4
-
61
-
-
70349847876
-
Network analyses in systems pharmacology.
-
Berger, S. I., Iyengar, R., Network analyses in systems pharmacology. Bioinformatics 2009, 25, 2466-2472.
-
(2009)
Bioinformatics
, vol.25
, pp. 2466-2472
-
-
Berger, S.I.1
Iyengar, R.2
-
62
-
-
70449467570
-
Immunosuppression and atypical infections in CML patients treated with dasatinib at 140mg daily
-
Sillaber, C., Herrmann, H., Bennett, K., Rix, U. et al., Immunosuppression and atypical infections in CML patients treated with dasatinib at 140mg daily. Eur. J. Clin. Invest. 2009, 39, 1098-1109.
-
(2009)
Eur. J. Clin. Invest.
, vol.39
, pp. 1098-1109
-
-
Sillaber, C.1
Herrmann, H.2
Bennett, K.3
Rix, U.4
-
63
-
-
34548097263
-
The Btk tyrosine kinase is a major target of the Bcr-Abl inhibitor dasatinib
-
USA
-
Hantschel, O., Rix, U., Schmidt, U., Burckstummer, T. et al., The Btk tyrosine kinase is a major target of the Bcr-Abl inhibitor dasatinib. Proc. Natl. Acad. Sci. USA 2007, 104, 13283-13288.
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 13283-13288
-
-
Hantschel, O.1
Rix, U.2
Schmidt, U.3
Burckstummer, T.4
-
64
-
-
38949093002
-
TANK-binding kinase-1 delineates innate and adaptive immune responses to DNA vaccines
-
Ishii, K. J., Kawagoe, T., Koyama, S., Matsui, K. et al., TANK-binding kinase-1 delineates innate and adaptive immune responses to DNA vaccines. Nature 2008, 451, 725-729.
-
(2008)
Nature
, vol.451
, pp. 725-729
-
-
Ishii, K.J.1
Kawagoe, T.2
Koyama, S.3
Matsui, K.4
-
65
-
-
35448979864
-
A novel small molecule inhibitor of signal transducers and activators of transcription 3 reverses immune tolerance in malignant glioma patients
-
Hussain, S. F., Kong, L. Y., Jordan, J., Conrad, C. et al., A novel small molecule inhibitor of signal transducers and activators of transcription 3 reverses immune tolerance in malignant glioma patients. Cancer Res. 2007, 67, 9630-9636.
-
(2007)
Cancer Res.
, vol.67
, pp. 9630-9636
-
-
Hussain, S.F.1
Kong, L.Y.2
Jordan, J.3
Conrad, C.4
-
66
-
-
41149089300
-
Novel immunosuppression: R348, a JAK3- and Syk-inhibitor attenuates acute cardiac allograft rejection
-
Deuse, T., Velotta, J. B., Hoyt, G., Govaert, J. A. et al., Novel immunosuppression: R348, a JAK3- and Syk-inhibitor attenuates acute cardiac allograft rejection. Transplantation 2008, 85, 885-892.
-
(2008)
Transplantation
, vol.85
, pp. 885-892
-
-
Deuse, T.1
Velotta, J.B.2
Hoyt, G.3
Govaert, J.A.4
-
67
-
-
77953720204
-
Systems pharmacology of arrhythmias
-
Berger, S. I., Ma'ayan, A., Iyengar, R., Systems pharmacology of arrhythmias. Sci. Signal. 2010, 3, ra30.
-
(2010)
Sci. Signal.
, vol.3
-
-
Berger, S.I.1
Ma'ayan, A.2
Iyengar, R.3
-
68
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
Lage, K., Karlberg, E. O., Storling, Z. M., Olason, P. I. et al., A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat. Biotechnol. 2007, 25, 309-316.
-
(2007)
Nat. Biotechnol.
, vol.3
, pp. 309-316
-
-
Lage, K.1
Karlberg, E.O.2
Storling, Z.M.3
Olason, P.I.4
-
69
-
-
85054668978
-
-
Chen, L., Zhang, X., Shen, B., Wu, L., Wang, Y. (Eds.), 4th International Conference on Computational Systems Biology, World Publishing Company, Suzhou, China
-
Li, S., Zhang, N., Zhang, B., in: Chen, L., Zhang, X., Shen, B., Wu, L., Wang, Y. (Eds.), 4th International Conference on Computational Systems Biology, World Publishing Company, Suzhou, China 2010, pp. 51-58.
-
(2010)
, pp. 51-58
-
-
Li, S.1
Zhang, N.2
Zhang, B.3
-
70
-
-
33749003166
-
Noonan syndrome and related disorders: dysregulated RAS-mitogen activated protein kinase signal transduction
-
Gelb, B. D., Tartaglia, M., Noonan syndrome and related disorders: dysregulated RAS-mitogen activated protein kinase signal transduction. Hum. Mol. Genet. 2006, 15, R220-R226.
-
(2006)
Hum. Mol. Genet.
, vol.15
-
-
Gelb, B.D.1
Tartaglia, M.2
-
71
-
-
34547140875
-
The human disease network
-
USA
-
Goh, K. I., Cusick, M. E., Valle, D., Childs, B. et al., The human disease network. Proc. Natl. Acad. Sci. USA 2007, 104, 8685-8690.
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 8685-8690
-
-
Goh, K.I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
-
72
-
-
48249103483
-
Networking metabolites and diseases
-
USA
-
Braun, P., Rietman, E., Vidal, M., Networking metabolites and diseases. Proc. Natl. Acad. Sci. USA 2008, 105, 9849-9850.
-
(2008)
Proc. Natl. Acad. Sci.
, vol.105
, pp. 9849-9850
-
-
Braun, P.1
Rietman, E.2
Vidal, M.3
-
73
-
-
35148838537
-
Drug-target network
-
Yildirim, M. A., Goh, K. I., Cusick, M. E., Barabasi, A. L., Vidal, M., Drug-target network. Nat. Biotechnol. 2007, 25, 1119-1126.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1119-1126
-
-
Yildirim, M.A.1
Goh, K.I.2
Cusick, M.E.3
Barabasi, A.L.4
Vidal, M.5
-
74
-
-
79251561193
-
TCM DatabaseTaiwan: the world's largest traditional Chinese medicine database for drug screening in silico
-
Chen, C. Y., TCM DatabaseTaiwan: the world's largest traditional Chinese medicine database for drug screening in silico. PLoS One 2011, 6, e15939.
-
(2011)
PLoS One
, vol.6
-
-
Chen, C.Y.1
-
75
-
-
77955039434
-
Molecular networks for the study of TCM pharmacology
-
Zhao, J., Jiang, P., Zhang, W., Molecular networks for the study of TCM pharmacology. Brief. Bioinform. 2010, 11, 417-430.
-
(2010)
Brief. Bioinform.
, vol.11
, pp. 417-430
-
-
Zhao, J.1
Jiang, P.2
Zhang, W.3
-
76
-
-
79959199033
-
Network target for screening synergistic drug combinations with application to traditional Chinese medicine
-
Li, S., Zhang, B., Zhang, N., Network target for screening synergistic drug combinations with application to traditional Chinese medicine. Biomed. Chromatogr. Syst. Biol. 2011, 5, S10.
-
(2011)
Biomed. Chromatogr. Syst. Biol.
, vol.5
-
-
Li, S.1
Zhang, B.2
Zhang, N.3
-
77
-
-
78650832745
-
Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae.
-
Li, S., Zhang, B., Jiang, D., Wei, Y., Zhang, N., Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae. Biomed. Chromatogr. Bioinformatics 2010, 11, S6.
-
(2010)
Biomed. Chromatogr. Bioinformatics
, vol.11
-
-
Li, S.1
Zhang, B.2
Jiang, D.3
Wei, Y.4
Zhang, N.5
-
78
-
-
79955676553
-
The inhibitory activities of the components of Huang-Lian-Jie-Du-Tang (HLJDT) on eicosanoid generation via lipoxygenase pathway
-
Zeng, H., Dou, S., Zhao, J., Fan, S. et al., The inhibitory activities of the components of Huang-Lian-Jie-Du-Tang (HLJDT) on eicosanoid generation via lipoxygenase pathway. J. Ethnopharmacol. 2011, 135, 561-568.
-
(2011)
J. Ethnopharmacol.
, vol.135
, pp. 561-568
-
-
Zeng, H.1
Dou, S.2
Zhao, J.3
Fan, S.4
-
79
-
-
42449161986
-
Dissection of mechanisms of Chinese medicinal formula Realgar-Indigo naturalis as an effective treatment for promyelocytic leukemia
-
USA
-
Wang, L., Zhou, G. B., Liu, P., Song, J. H. et al., Dissection of mechanisms of Chinese medicinal formula Realgar-Indigo naturalis as an effective treatment for promyelocytic leukemia. Proc. Natl. Acad. Sci. USA 2008, 105, 4826-4831.
-
(2008)
Proc. Natl. Acad. Sci.
, vol.105
, pp. 4826-4831
-
-
Wang, L.1
Zhou, G.B.2
Liu, P.3
Song, J.H.4
-
80
-
-
34047247532
-
Are herbpairs of traditional Chinese medicine distinguishable from others? Pattern analysis and artificial intelligence classification study of traditionally defined herbal properties
-
Ung, C. Y., Li, H., Cao, Z. W., Li, Y. X., Chen, Y. Z., Are herbpairs of traditional Chinese medicine distinguishable from others? Pattern analysis and artificial intelligence classification study of traditionally defined herbal properties. J. Ethnopharmacol. 2007, 111, 371-377.
-
(2007)
J. Ethnopharmacol.
, vol.111
, pp. 371-377
-
-
Ung, C.Y.1
Li, H.2
Cao, Z.W.3
Li, Y.X.4
Chen, Y.Z.5
-
81
-
-
70350447609
-
Role of proteomics in nutrigenomics and nutrigenetics
-
Kussmann, M., Role of proteomics in nutrigenomics and nutrigenetics. Expert Rev. Proteomics 2009, 6, 453-456.
-
(2009)
Expert Rev. Proteomics
, vol.6
, pp. 453-456
-
-
Kussmann, M.1
-
82
-
-
70349765534
-
Proteomics at the center of nutrigenomics: comprehensive molecular understanding of dietary health effects
-
Kussmann, M., Affolter, M., Proteomics at the center of nutrigenomics: comprehensive molecular understanding of dietary health effects. Nutrition 2009, 25, 1085-1093.
-
(2009)
Nutrition
, vol.25
, pp. 1085-1093
-
-
Kussmann, M.1
Affolter, M.2
-
83
-
-
2442486588
-
Design and synthesis of novel hydrophilic spacers for the reduction of nonspecific binding proteins on affinity resins
-
Shiyama, T., Furuya, M., Yamazaki, A., Terada, T., Tanaka, A., Design and synthesis of novel hydrophilic spacers for the reduction of nonspecific binding proteins on affinity resins. Bioorg. Med. Chem. 2004, 12, 2831-2841.
-
(2004)
Bioorg. Med. Chem.
, vol.12
, pp. 2831-2841
-
-
Shiyama, T.1
Furuya, M.2
Yamazaki, A.3
Terada, T.4
Tanaka, A.5
-
84
-
-
0038371369
-
Quantitative chemical proteomics for identifying candidate drug targets
-
Oda, Y., Owa, T., Sato, T., Boucher, B. et al., Quantitative chemical proteomics for identifying candidate drug targets. Anal. Chem. 2003, 75, 2159-2165.
-
(2003)
Anal. Chem.
, vol.75
, pp. 2159-2165
-
-
Oda, Y.1
Owa, T.2
Sato, T.3
Boucher, B.4
-
85
-
-
33847788820
-
Diazonamide toxins reveal an unexpected function for ornithine delta-amino transferase in mitotic cell division
-
USA
-
Wang, G., Shang, L., Burgett, A. W., Harran, P. G., Wang, X., Diazonamide toxins reveal an unexpected function for ornithine delta-amino transferase in mitotic cell division. Proc. Natl. Acad. Sci. USA 2007, 104, 2068-2073.
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 2068-2073
-
-
Wang, G.1
Shang, L.2
Burgett, A.W.3
Harran, P.G.4
Wang, X.5
-
86
-
-
1842499791
-
Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry
-
Schirle, M., Heurtier, M. A., Kuster, B., Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry. Mol. Cell. Proteomics 2003, 2, 1297-1305.
-
(2003)
Mol. Cell. Proteomics
, vol.2
, pp. 1297-1305
-
-
Schirle, M.1
Heurtier, M.A.2
Kuster, B.3
-
87
-
-
79251573543
-
Initial characterization of the human central proteome
-
Burkard, T. R., Planyavsky, M., Kaupe, I., Breitwieser, F. P. et al., Initial characterization of the human central proteome. Biomed. Chromatogr. Syst. Biol. 2011, 5, 17.
-
(2011)
Biomed. Chromatogr. Syst. Biol.
, vol.5
, pp. 17
-
-
Burkard, T.R.1
Planyavsky, M.2
Kaupe, I.3
Breitwieser, F.P.4
-
88
-
-
55949116385
-
Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes
-
Trinkle-Mulcahy, L., Boulon, S., Lam, Y. W., Urcia, R. et al., Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes. J. Cell. Biol. 2008, 183, 223-239.
-
(2008)
J. Cell. Biol.
, vol.183
, pp. 223-239
-
-
Trinkle-Mulcahy, L.1
Boulon, S.2
Lam, Y.W.3
Urcia, R.4
-
89
-
-
62449337409
-
The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2)
-
Winger, J. A., Hantschel, O., Superti-Furga, G., Kuriyan, J., The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2). Biomed. Chromatogr. Struct. Biol. 2009, 9, 7.
-
(2009)
Biomed. Chromatogr. Struct. Biol.
, vol.9
, pp. 7
-
-
Winger, J.A.1
Hantschel, O.2
Superti-Furga, G.3
Kuriyan, J.4
-
90
-
-
77349091815
-
NetPath: a public resource of curated signal transduction pathways
-
Kandasamy, K., Mohan, S. S., Raju, R., Keerthikumar, S. et al., NetPath: a public resource of curated signal transduction pathways. Genome Biol. 2010, 11, R3.
-
(2010)
Genome Biol.
, vol.11
-
-
Kandasamy, K.1
Moha, S.S.2
Raju, R.3
Keerthikumar, S.4
-
91
-
-
48349105261
-
WikiPathways: pathway editing for the people
-
Pico, A. R., Kelder, T., van Iersel, M. P., Hanspers, K. et al., WikiPathways: pathway editing for the people. PLoS Biol. 2008, 6, e184.
-
(2008)
PLoS Biol.
, vol.6
-
-
Pico, A.R.1
Kelder, T.2
van Iersel, M.P.3
Hanspers, K.4
-
92
-
-
0036088133
-
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
-
Xenarios, I., Salwinski, L., Duan, X. J., Higney, P. et al., DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 2002, 30, 303-305.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
-
93
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M. et al., The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 2011, 39, D561-D568.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
-
94
-
-
75549087827
-
STITCH 2: an interaction network database for small molecules and proteins
-
Kuhn, M., Szklarczyk, D., Franceschini, A., Campillos, M. et al., STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Res. 2010, 38, D552-D556.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kuhn, M.1
Szklarczyk, D.2
Franceschini, A.3
Campillos, M.4
-
95
-
-
38549092091
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D. L., Barrett, T., Benson, D. A., Bryant, S. H. et al., Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2008, 36, D13-D21.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
-
96
-
-
75549087826
-
COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer
-
Forbes, S. A., Tang, G., Bindal, N., Bamford, S. et al., COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer. Nucleic Acids Res. 2010, 38, D652-D657.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Forbes, S.A.1
Tang, G.2
Bindal, N.3
Bamford, S.4
-
97
-
-
38549151817
-
DrugBank: a knowledgebase for drugs, drug actions and drug targets
-
Wishart, D. S., Knox, C., Guo, A. C., Cheng, D. et al., DrugBank: a knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Res. 2008, 36, D901-D906.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Cheng, D.4
-
98
-
-
76149120425
-
A side effect resource to capture phenotypic effects of drugs
-
Kuhn, M., Campillos, M., Letunic, I., Jensen, L. J., Bork, P., A side effect resource to capture phenotypic effects of drugs. Mol. Syst. Biol. 2010, 6, 343.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 343
-
-
Kuhn, M.1
Campillos, M.2
Letunic, I.3
Jensen, L.J.4
Bork, P.5
-
99
-
-
75549091977
-
SMPDB: The small molecule pathway database
-
Frolkis, A., Knox, C., Lim, E., Jewison, T. et al., SMPDB: The small molecule pathway database. Nucleic Acids Res. 2010, 38, D480-D487.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Frolkis, A.1
Knox, C.2
Lim, E.3
Jewison, T.4
-
100
-
-
58149203232
-
MMsINC: a large-scale chemoinformatics database
-
Masciocchi, J., Frau, G., Fanton, M., Sturlese, M. et al., MMsINC: a large-scale chemoinformatics database. Nucleic Acids Res. 2009, 37, D284-D290.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Masciocchi, J.1
Frau, G.2
Fanton, M.3
Sturlese, M.4
-
101
-
-
75549092202
-
Chemical entities of biological interest: an update
-
de Matos, P., Alcantara, R., Dekker, A., Ennis, M. et al., Chemical entities of biological interest: an update. Nucleic Acids Res. 2010, 38, D249-D254.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
de Matos, P.1
Alcantara, R.2
Dekker, A.3
Ennis, M.4
-
102
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
Smoot, M. E., Ono, K., Ruscheinski, J., Wang, P. L., Ideker, T., Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27, 431-432.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
103
-
-
78650616537
-
BiologicalNetworks 2.0 - an integrative view of genome biology data
-
Kozhenkov, S., Dubinina, Y., Sedova, M., Gupta, A. et al., BiologicalNetworks 2.0 - an integrative view of genome biology data. Biomed. Chromatogr. Bioinformatics 2010, 11, 610.
-
(2010)
Biomed. Chromatogr. Bioinformatics
, vol.11
, pp. 610
-
-
Kozhenkov, S.1
Dubinina, Y.2
Sedova, M.3
Gupta, A.4
-
104
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed, A. I., Sharov, V., White, J., Li, J. et al., TM4: A free, open-source system for microarray data management and analysis. Biotechniques 2003, 34, 374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
-
105
-
-
79960029361
-
SwissDock, a protein-small molecule docking web service based on EADock DSS
-
Grosdidier, A., Zoete, V., Michielin, O., SwissDock, a protein-small molecule docking web service based on EADock DSS. Nucleic Acids Res. 2011, 39, W270-W277.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Grosdidier, A.1
Zoete, V.2
Michielin, O.3
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