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Volumn 6, Issue 11, 2010, Pages

A computational approach to analyze the mechanism of action of the kinase inhibitor bafetinib

Author keywords

[No Author keywords available]

Indexed keywords

CELL DEATH; DRUG INTERACTIONS; DRUG THERAPY; MOLECULAR BIOLOGY; PROTEINS;

EID: 78649683041     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1001001     Document Type: Article
Times cited : (30)

References (54)
  • 1
    • 70349847876 scopus 로고    scopus 로고
    • Network analyses in systems pharmacology
    • Berger SI, Iyengar R (2009) Network analyses in systems pharmacology. Bioinformatics 25: 2466-2472.
    • (2009) Bioinformatics , vol.25 , pp. 2466-2472
    • Berger, S.I.1    Iyengar, R.2
  • 2
    • 37049014938 scopus 로고    scopus 로고
    • Chemical proteomic profiles of the BCR-ABL inhibitors imatinib, nilotinib, and dasatinib reveal novel kinase and nonkinase targets
    • Rix U, Hantschel O, Durnberger G, Remsing Rix LL, Planyavsky M, et al. (2007) Chemical proteomic profiles of the BCR-ABL inhibitors imatinib, nilotinib, and dasatinib reveal novel kinase and nonkinase targets. Blood 110: 4055-4063.
    • (2007) Blood , vol.110 , pp. 4055-4063
    • Rix, U.1    Hantschel, O.2    Durnberger, G.3    Remsing, R.L.L.4    Planyavsky, M.5
  • 3
    • 70349972376 scopus 로고    scopus 로고
    • Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: An application to drug affinity chromatography
    • Fernbach NV, Planyavsky M, Muller A, Breitwieser FP, Colinge J, et al. (2009) Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: an application to drug affinity chromatography. J Proteome Res 8: 4753-4765.
    • (2009) J Proteome Res , vol.8 , pp. 4753-4765
    • Fernbach, N.V.1    Planyavsky, M.2    Muller, A.3    Breitwieser, F.P.4    Colinge, J.5
  • 4
    • 70349695861 scopus 로고    scopus 로고
    • Tankyrase inhibition stabilizes axin and antagonizes Wnt signalling
    • Huang SM, Mishina YM, Liu S, Cheung A, Stegmeier F, et al. (2009) Tankyrase inhibition stabilizes axin and antagonizes Wnt signalling. Nature 461: 614-620.
    • (2009) Nature , vol.461 , pp. 614-620
    • Huang, S.M.1    Mishina, Y.M.2    Liu, S.3    Cheung, A.4    Stegmeier, F.5
  • 5
    • 69249136243 scopus 로고    scopus 로고
    • Target profiling of small molecules by chemical proteomics
    • Rix U, Superti-Furga G (2009) Target profiling of small molecules by chemical proteomics. Nat Chem Biol 5: 616-624.
    • (2009) Nat Chem Biol , vol.5 , pp. 616-624
    • Rix, U.1    Superti-Furga, G.2
  • 6
    • 70349783219 scopus 로고    scopus 로고
    • The analysis of the drug-targets based on the topological properties in the human protein-protein interaction network
    • Zhu M, Gao L, Li X, Liu Z, Xu C, et al. (2009) The analysis of the drug-targets based on the topological properties in the human protein-protein interaction network. J Drug Target 17: 524-532.
    • (2009) J Drug Target , vol.17 , pp. 524-532
    • Zhu, M.1    Gao, L.2    Li, X.3    Liu, Z.4    Xu, C.5
  • 7
    • 33947095027 scopus 로고    scopus 로고
    • A human phenome-interactome network of protein complexes implicated in genetic disorders
    • Lage K, Karlberg EO, Storling ZM, Olason PI, Pedersen AG, et al. (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol 25: 309-316.
    • (2007) Nat Biotechnol , vol.25 , pp. 309-316
    • Lage, K.1    Karlberg, E.O.2    Storling, Z.M.3    Olason, P.I.4    Pedersen, A.G.5
  • 9
    • 33748706765 scopus 로고    scopus 로고
    • Global topological features of cancer proteins in the human interactome
    • Jonsson PF, Bates PA (2006) Global topological features of cancer proteins in the human interactome. Bioinformatics 22: 2291-2297.
    • (2006) Bioinformatics , vol.22 , pp. 2291-2297
    • Jonsson, P.F.1    Bates, P.A.2
  • 10
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • Campillos M, Kuhn M, Gavin AC, Jensen LJ, Bork P (2008) Drug target identification using side-effect similarity. Science 321: 263-266.
    • (2008) Science , vol.321 , pp. 263-266
    • Campillos, M.1    Kuhn, M.2    Gavin, A.C.3    Jensen, L.J.4    Bork, P.5
  • 12
    • 28444448000 scopus 로고    scopus 로고
    • Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
    • Wachi S, Yoneda K, Wu R (2005) Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues. Bioinformatics 21: 4205-4208.
    • (2005) Bioinformatics , vol.21 , pp. 4205-4208
    • Wachi, S.1    Yoneda, K.2    Wu, R.3
  • 14
    • 43249114206 scopus 로고    scopus 로고
    • Network-based global inference of human disease genes
    • Wu X, Jiang R, Zhang MQ, Li S (2008) Network-based global inference of human disease genes. Mol Syst Biol 4: 189.
    • (2008) Mol Syst Biol , vol.4 , pp. 189
    • Wu, X.1    Jiang, R.2    Zhang, M.Q.3    Li, S.4
  • 16
    • 77950491448 scopus 로고    scopus 로고
    • PerturbationAnalyzer: A tool for investigating the effects of concentration perturbation on protein interaction networks
    • Li F, Li P, Xu W, Peng Y, Bo X, et al. PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks. Bioinformatics 26: 275-277.
    • Bioinformatics , vol.26 , pp. 275-277
    • Li, F.1    Li, P.2    Xu, W.3    Peng, Y.4    Bo, X.5
  • 17
    • 35348813628 scopus 로고    scopus 로고
    • Propagation of large concentration changes in reversible protein-binding networks
    • Maslov S, Ispolatov I (2007) Propagation of large concentration changes in reversible protein-binding networks. Proc Natl Acad Sci U S A 104: 13655-13660.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 13655-13660
    • Maslov, S.1    Ispolatov, I.2
  • 18
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 19
    • 77951240586 scopus 로고    scopus 로고
    • Network properties of complex human disease genes identified through genome-wide association studies
    • doi:10.1371/journal.pone.0008090
    • Barrenas F, Chavali S, Holme P, Mobini R, Benson M (2009) Network properties of complex human disease genes identified through genome-wide association studies. PLoS One 4: e8090. doi:10.1371/journal.pone.0008090.
    • (2009) PLoS One , vol.4
    • Barrenas, F.1    Chavali, S.2    Holme, P.3    Mobini, R.4    Benson, M.5
  • 20
    • 28444479480 scopus 로고    scopus 로고
    • NS-187, a potent and selective dual Bcr-Abl/Lyn tyrosine kinase inhibitor, is a novel agent for imatinib-resistant leukemia
    • Kimura S, Naito H, Segawa H, Kuroda J, Yuasa T, et al. (2005) NS-187, a potent and selective dual Bcr-Abl/Lyn tyrosine kinase inhibitor, is a novel agent for imatinib-resistant leukemia. Blood 106: 3948-3954.
    • (2005) Blood , vol.106 , pp. 3948-3954
    • Kimura, S.1    Naito, H.2    Segawa, H.3    Kuroda, J.4    Yuasa, T.5
  • 21
    • 34948875686 scopus 로고    scopus 로고
    • Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors
    • Bantscheff M, Eberhard D, Abraham Y, Bastuck S, Boesche M, et al. (2007) Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors. Nat Biotechnol 25: 1035-1044.
    • (2007) Nat Biotechnol , vol.25 , pp. 1035-1044
    • Bantscheff, M.1    Eberhard, D.2    Abraham, Y.3    Bastuck, S.4    Boesche, M.5
  • 22
    • 63849172494 scopus 로고    scopus 로고
    • Identifying the proteins to which small-molecule probes and drugs bind in cells
    • Ong SE, Schenone M, Margolin AA, Li X, Do K, et al. (2009) Identifying the proteins to which small-molecule probes and drugs bind in cells. Proc Natl Acad Sci U S A 106: 4617-4622.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 4617-4622
    • Ong, S.E.1    Schenone, M.2    Margolin, A.A.3    Li, X.4    do, K.5
  • 23
    • 70349624519 scopus 로고    scopus 로고
    • Proteomics strategy for quantitative protein interaction profiling in cell extracts
    • Sharma K, Weber C, Bairlein M, Greff Z, Keri G, et al. (2009) Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nat Methods 6: 741-744.
    • (2009) Nat Methods , vol.6 , pp. 741-744
    • Sharma, K.1    Weber, C.2    Bairlein, M.3    Greff, Z.4    Keri, G.5
  • 30
    • 75849153303 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt) in 2010
    • UniProt-Consortium
    • UniProt-Consortium (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res 38: D142-148.
    • (2010) Nucleic Acids Res , vol.38
  • 31
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 33
    • 74249085402 scopus 로고    scopus 로고
    • A comprehensive target selectivity survey of the BCR-ABL kinase inhibitor INNO- 406 by kinase profiling and chemical proteomics in chronic myeloid leukemia cells
    • Rix U, Remsing Rix LL, Terker AS, Fernbach NV, Hantschel O, et al. (2010) A comprehensive target selectivity survey of the BCR-ABL kinase inhibitor INNO- 406 by kinase profiling and chemical proteomics in chronic myeloid leukemia cells. Leukemia 24: 44-50.
    • (2010) Leukemia , vol.24 , pp. 44-50
    • Rix, U.1    Remsing, R.L.L.2    Terker, A.S.3    Fernbach, N.V.4    Hantschel, O.5
  • 34
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, et al. (2005) Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 4: 1265-1272.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4    Nagasu, T.5
  • 36
    • 1842607847 scopus 로고    scopus 로고
    • R-Development-Core-Team, Vienna, Austria: R Foundation for Statistical Computing, Availab, ISBN 3-900051-07-0
    • R-Development-Core-Team (2010) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing, Available: http://www.R-project.org. ISBN 3-900051-07-0.
    • (2010) R: A Language and Environment For Statistical Computing
  • 37
    • 84971564562 scopus 로고    scopus 로고
    • An interface to the BOOST graph library
    • Available, Accessed 13 September 2010
    • Carey V, Long L, Gentleman RRBGL (2010) An interface to the BOOST graph library. Available: http://bioconductor.org/packages/release/bioc/html/RBGL.html. Accessed 13 September 2010.
    • (2010)
    • Carey, V.1    Long, L.2    Gentleman, R.R.B.G.L.3
  • 41
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5
  • 42
    • 0028115911 scopus 로고
    • Antisense BCR-ABL oligonucleotides induce apoptosis in the Philadelphia chromosome-positive cell line BV173
    • Smetsers TF, Skorski T, van de Locht LT, Wessels HM, Pennings AH, et al. (1994) Antisense BCR-ABL oligonucleotides induce apoptosis in the Philadelphia chromosome-positive cell line BV173. Leukemia 8: 129-140.
    • (1994) Leukemia , vol.8 , pp. 129-140
    • Smetsers, T.F.1    Skorski, T.2    van de Locht, L.T.3    Wessels, H.M.4    Pennings, A.H.5
  • 43
    • 33847377573 scopus 로고    scopus 로고
    • A robustness-based approach to systems-oriented drug design
    • Kitano H (2007) A robustness-based approach to systems-oriented drug design. Nat Rev Drug Discov 6: 202-210.
    • (2007) Nat Rev Drug Discov , vol.6 , pp. 202-210
    • Kitano, H.1
  • 44
    • 0027979832 scopus 로고
    • BCR-ABL maintains resistance of chronic myelogenous leukemia cells to apoptotic cell death
    • McGahon A, Bissonnette R, Schmitt M, Cotter KM, Green DR, et al. (1994) BCR-ABL maintains resistance of chronic myelogenous leukemia cells to apoptotic cell death. Blood 83: 1179-1187.
    • (1994) Blood , vol.83 , pp. 1179-1187
    • McGahon, A.1    Bissonnette, R.2    Schmitt, M.3    Cotter, K.M.4    Green, D.R.5
  • 45
    • 4544343214 scopus 로고    scopus 로고
    • A Bcr/Abl-independent, Lyn-dependent form of imatinib mesylate (STI-571) resistance is associated with altered expression of Bcl-2
    • Dai Y, Rahmani M, Corey SJ, Dent P, Grant S (2004) A Bcr/Abl-independent, Lyn-dependent form of imatinib mesylate (STI-571) resistance is associated with altered expression of Bcl-2. J Biol Chem 279: 34227-34239.
    • (2004) J Biol Chem , vol.279 , pp. 34227-34239
    • Dai, Y.1    Rahmani, M.2    Corey, S.J.3    Dent, P.4    Grant, S.5
  • 46
    • 72949116167 scopus 로고    scopus 로고
    • Activation of the p38 Map kinase pathway is essential for the antileukemic effects of dasatinib
    • Dumka D, Puri P, Carayol N, Lumby C, Balachandran H, et al. (2009) Activation of the p38 Map kinase pathway is essential for the antileukemic effects of dasatinib. Leuk Lymphoma 50: 2017-2029.
    • (2009) Leuk Lymphoma , vol.50 , pp. 2017-2029
    • Dumka, D.1    Puri, P.2    Carayol, N.3    Lumby, C.4    Balachandran, H.5
  • 47
    • 77949848665 scopus 로고    scopus 로고
    • A chemical and phosphoproteomic characterization of dasatinib action in lung cancer
    • Li J, Rix U, Fang B, Bai Y, Edwards A, et al. (2010) A chemical and phosphoproteomic characterization of dasatinib action in lung cancer. Nat Chem Biol 6: 291-299.
    • (2010) Nat Chem Biol , vol.6 , pp. 291-299
    • Li, J.1    Rix, U.2    Fang, B.3    Bai, Y.4    Edwards, A.5
  • 48
    • 33847701326 scopus 로고    scopus 로고
    • Expression and mutation analysis of the discoidin domain receptors 1 and 2 in non-small cell lung carcinoma
    • Ford CE, Lau SK, Zhu CQ, Andersson T, Tsao MS, et al. (2007) Expression and mutation analysis of the discoidin domain receptors 1 and 2 in non-small cell lung carcinoma. Br J Cancer 96: 808-814.
    • (2007) Br J Cancer , vol.96 , pp. 808-814
    • Ford, C.E.1    Lau, S.K.2    Zhu, C.Q.3    Andersson, T.4    Tsao, M.S.5
  • 49
    • 36849065315 scopus 로고    scopus 로고
    • Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
    • Rikova K, Guo A, Zeng Q, Possemato A, Yu J, et al. (2007) Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. Cell 131: 1190-1203.
    • (2007) Cell , vol.131 , pp. 1190-1203
    • Rikova, K.1    Guo, A.2    Zeng, Q.3    Possemato, A.4    Yu, J.5
  • 50
    • 42549111710 scopus 로고    scopus 로고
    • Overcoming imatinib resistance using Src inhibitor CGP76030, Abl inhibitor nilotinib and Abl/Lyn inhibitor INNO-406 in newly established K562 variants with BCRABL gene amplification
    • Morinaga K, Yamauchi T, Kimura S, Maekawa T, Ueda T (2008) Overcoming imatinib resistance using Src inhibitor CGP76030, Abl inhibitor nilotinib and Abl/Lyn inhibitor INNO-406 in newly established K562 variants with BCRABL gene amplification. Int J Cancer 122: 2621-2627.
    • (2008) Int J Cancer , vol.122 , pp. 2621-2627
    • Morinaga, K.1    Yamauchi, T.2    Kimura, S.3    Maekawa, T.4    Ueda, T.5
  • 51
    • 77952840150 scopus 로고    scopus 로고
    • Phase 1 study of INNO-406, a dual Abl/Lyn kinase inhibitor, in Philadelphia chromosome-positive leukemias after imatinib resistance or intolerance
    • Kantarjian H, Coutre PL, Cortes J, Pinilla-Ibarz J, Nagler A, et al. (2010) Phase 1 study of INNO-406, a dual Abl/Lyn kinase inhibitor, in Philadelphia chromosome-positive leukemias after imatinib resistance or intolerance. Cancer 116: 2665-2672.
    • (2010) Cancer , vol.116 , pp. 2665-2672
    • Kantarjian, H.1    Coutre, P.L.2    Cortes, J.3    Pinilla-Ibarz, J.4    Nagler, A.5
  • 52
    • 77955138504 scopus 로고    scopus 로고
    • Inhibition of IGFIR tyrosine kinase induces apoptosis and cell cycle arrest in imatinib-resistant chronic myeloid leukemia cells
    • Shi P, Chandra J, Sun X, Gergely M, Cortes JE, et al. (2010) Inhibition of IGFIR tyrosine kinase induces apoptosis and cell cycle arrest in imatinib-resistant chronic myeloid leukemia cells. J Cell Mol Med 14: 1777-92.
    • (2010) J Cell Mol Med , vol.14 , pp. 1777-1792
    • Shi, P.1    Chandra, J.2    Sun, X.3    Gergely, M.4    Cortes, J.E.5
  • 53
    • 36849023013 scopus 로고    scopus 로고
    • Cardiotoxicity associated with tyrosine kinase inhibitor sunitinib
    • Chu TF, Rupnick MA, Kerkela R, Dallabrida SM, Zurakowski D, et al. (2007) Cardiotoxicity associated with tyrosine kinase inhibitor sunitinib. Lancet 370: 2011-2019.
    • (2007) Lancet , vol.370 , pp. 2011-2019
    • Chu, T.F.1    Rupnick, M.A.2    Kerkela, R.3    Dallabrida, S.M.4    Zurakowski, D.5
  • 54
    • 77955267778 scopus 로고    scopus 로고
    • Imatinib does not induce cardiotoxicity at clinically relevant concentrations in preclinical studies
    • Wolf A, Couttet P, Dong M, Grenet O, Heron M, et al. (2010) Imatinib does not induce cardiotoxicity at clinically relevant concentrations in preclinical studies. Leuk Res 34: 1180-1188.
    • (2010) Leuk Res , vol.34 , pp. 1180-1188
    • Wolf, A.1    Couttet, P.2    Dong, M.3    Grenet, O.4    Heron, M.5


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