-
1
-
-
77951221352
-
A re-annotation pipeline for Illumina BeadArrays: Improving the interpretation of gene expression data
-
doi: 10.1093/nar/gkp942
-
Barbosa-Morais NL, Dunning MJ, Samarajiwa SA, Darot JF, Ritchie ME, Lynch AG, Tavare S. 2010. A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Res 38: e17. doi: 10.1093/nar/gkp942.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Barbosa-Morais, N.L.1
Dunning, M.J.2
Samarajiwa, S.A.3
Darot, J.F.4
Ritchie, M.E.5
Lynch, A.G.6
Tavare, S.7
-
2
-
-
33644846509
-
Epigenetic gene silencing in cancer - A mechanism for early oncogenic pathway addiction?
-
DOI 10.1038/nrc1799, PII N1799
-
Baylin SB, Ohm JE. 2006. Epigenetic gene silencing in cancer - a mechanism for early oncogenic pathway addiction? Nat Rev Cancer 6: 107-116. (Pubitemid 43361543)
-
(2006)
Nature Reviews Cancer
, vol.6
, Issue.2
, pp. 107-116
-
-
Baylin, S.B.1
Ohm, J.E.2
-
3
-
-
33847032960
-
The Mammalian Epigenome
-
DOI 10.1016/j.cell.2007.01.033, PII S0092867407001286
-
Bernstein BE, Meissner A, Lander ES. 2007. The mammalian epigenome. Cell 128: 669-681. (Pubitemid 46273573)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 669-681
-
-
Bernstein, B.E.1
Meissner, A.2
Lander, E.S.3
-
4
-
-
84856306090
-
Genome-wide DNA methylation profiling using Infinium assay
-
Bibikova M. 2009. Genome-wide DNA methylation profiling using Infinium assay. Epigenomics 1: 177-200.
-
(2009)
Epigenomics
, vol.1
, pp. 177-200
-
-
Bibikova, M.1
-
6
-
-
0036098559
-
CpG island methylation in aberrant crypt foci of the colorectum
-
Chan AO, Broaddus RR, Houlihan PS, Issa JP, Hamilton SR, Rashid A. 2002. CpG island methylation in aberrant crypt foci of the colorectum. Am J Pathol 160: 1823-1830. (Pubitemid 34525661)
-
(2002)
American Journal of Pathology
, vol.160
, Issue.5
, pp. 1823-1830
-
-
Chan, A.O.-O.1
Broaddus, R.R.2
Houlihan, P.S.3
Issa, J.-P.J.4
Hamilton, S.R.5
Rashid, A.6
-
7
-
-
44449094545
-
Convergence of mutation and epigenetic alterations identifies common genes in cancer that predict for poor prognosis
-
doi: 10.1371/journal.pmed.0050114
-
Chan TA, Glockner S, Yi JM, Chen W, Van Neste L, Cope L, Herman JG, Velculescu V, Schuebel KE, Ahuja N, et al. 2008. Convergence of mutation and epigenetic alterations identifies common genes in cancer that predict for poor prognosis. PLoS Med 5: e114. doi: 10.1371/journal.pmed.0050114.
-
(2008)
PLoS Med
, vol.5
-
-
Chan, T.A.1
Glockner, S.2
Yi, J.M.3
Chen, W.4
Van Neste, L.5
Cope, L.6
Herman, J.G.7
Velculescu, V.8
Schuebel, K.E.9
Ahuja, N.10
-
8
-
-
58149166788
-
CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer
-
Cheng YW, Pincas H, Bacolod MD, Schemmann G, Giardina SF, Huang J, Barral S, Idrees K, Khan SA, Zeng Z, et al. 2008. CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer. Clin Cancer Res 14: 6005-6013.
-
(2008)
Clin Cancer Res
, vol.14
, pp. 6005-6013
-
-
Cheng, Y.W.1
Pincas, H.2
Bacolod, M.D.3
Schemmann, G.4
Giardina, S.F.5
Huang, J.6
Barral, S.7
Idrees, K.8
Khan, S.A.9
Zeng, Z.10
-
9
-
-
58249128191
-
Epigenetic profiles distinguish pleural mesothelioma from normal pleura and predict lung asbestos burden and clinical outcome
-
Christensen BC, Houseman EA, Godleski JJ, Marsit CJ, Longacker JL, Roelofs CR, Karagas MR, Wrensch MR, Yeh RF, Nelson HH, et al. 2009a. Epigenetic profiles distinguish pleural mesothelioma from normal pleura and predict lung asbestos burden and clinical outcome. Cancer Res 69: 227-234.
-
(2009)
Cancer Res
, vol.69
, pp. 227-234
-
-
Christensen, B.C.1
Houseman, E.A.2
Godleski, J.J.3
Marsit, C.J.4
Longacker, J.L.5
Roelofs, C.R.6
Karagas, M.R.7
Wrensch, M.R.8
Yeh, R.F.9
Nelson, H.H.10
-
10
-
-
70149099610
-
Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context
-
doi: 10.1371/journal.pgen.1000602
-
Christensen BC, Houseman EA, Marsit CJ, Zheng S, Wrensch MR, Wiemels JL, Nelson HH, Karagas MR, Padbury JF, Bueno R, et al. 2009b. Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context. PLoS Genet 5: e1000602. doi: 10.1371/journal.pgen.1000602.
-
(2009)
PLoS Genet
, vol.5
-
-
Christensen, B.C.1
Houseman, E.A.2
Marsit, C.J.3
Zheng, S.4
Wrensch, M.R.5
Wiemels, J.L.6
Nelson, H.H.7
Karagas, M.R.8
Padbury, J.F.9
Bueno, R.10
-
11
-
-
77957329892
-
Breast cancer DNA methylation profiles are associated with tumor size and alcohol and folate intake
-
doi: 10.1371/journal.pgen.1001043
-
Christensen BC, Kelsey KT, Zheng S, Houseman EA, Marsit CJ, Wrensch MR, Wiemels JL, Nelson HH, Karagas MR, Kushi LH, et al. 2010. Breast cancer DNA methylation profiles are associated with tumor size and alcohol and folate intake. PLoS Genet 6: e1001043. doi: 10.1371/journal.pgen.1001043.
-
(2010)
PLoS Genet
, vol.6
-
-
Christensen, B.C.1
Kelsey, K.T.2
Zheng, S.3
Houseman, E.A.4
Marsit, C.J.5
Wrensch, M.R.6
Wiemels, J.L.7
Nelson, H.H.8
Karagas, M.R.9
Kushi, L.H.10
-
12
-
-
79251470741
-
DNA methylation, isocitrate dehydrogenase mutation, and survival in glioma
-
Christensen BC, Smith AA, Zheng S, Koestler DC, Houseman EA, Marsit CJ, Wiemels JL, Nelson HH, Karagas MR, Wrensch MR, et al. 2011. DNA methylation, isocitrate dehydrogenase mutation, and survival in glioma. J Natl Cancer Inst 103: 143-153.
-
(2011)
J Natl Cancer Inst
, vol.103
, pp. 143-153
-
-
Christensen, B.C.1
Smith, A.A.2
Zheng, S.3
Koestler, D.C.4
Houseman, E.A.5
Marsit, C.J.6
Wiemels, J.L.7
Nelson, H.H.8
Karagas, M.R.9
Wrensch, M.R.10
-
13
-
-
12344317031
-
Epigenetic inactivation of SLIT3 and SLIT1 genes in human cancers
-
DOI 10.1038/sj.bjc.6602222
-
Dickinson RE, Dallol A, Bieche I, Krex D, Morton D, Maher ER, Latif F. 2004. Epigenetic inactivation of SLIT3 and SLIT1 genes in human cancers. Br J Cancer 91: 2071-2078. (Pubitemid 40128774)
-
(2004)
British Journal of Cancer
, vol.91
, Issue.12
, pp. 2071-2078
-
-
Dickinson, R.E.1
Dallo, A.2
Bieche, I.3
Krex, D.4
Norton, D.5
Maher, E.R.6
Latif, F.7
-
14
-
-
46249088370
-
lumi: A pipeline for processing Illumina microarray
-
DOI 10.1093/bioinformatics/btn224
-
Du P, Kibbe WA, Lin SM. 2008. lumi: a pipeline for processing Illumina microarray. Bioinformatics 24: 1547-1548. (Pubitemid 351911712)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
15
-
-
36849059066
-
LINE-1 hypomethylation in cancer is highly variable and inversely correlated with microsatellite instability
-
doi: 10.1371/journal.pone.0000399
-
Estecio MR, Gharibyan V, Shen L, Ibrahim AE, Doshi K, He R, Jelinek J, Yang AS, Yan PS, Huang TH, et al. 2007. LINE-1 hypomethylation in cancer is highly variable and inversely correlated with microsatellite instability. PLoS ONE 2: e399. doi: 10.1371/journal.pone.0000399.
-
(2007)
PLoS ONE
, vol.2
-
-
Estecio, M.R.1
Gharibyan, V.2
Shen, L.3
Ibrahim, A.E.4
Doshi, K.5
He, R.6
Jelinek, J.7
Yang, A.S.8
Yan, P.S.9
Huang, T.H.10
-
16
-
-
78649274945
-
Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer
-
Estecio MR, Gallegos J, Vallot C, Castoro RJ, Chung W, Maegawa S, Oki Y, Kondo Y, Jelinek J, Shen L, et al. 2010. Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer. Genome Res 20: 1369-1382.
-
(2010)
Genome Res
, vol.20
, pp. 1369-1382
-
-
Estecio, M.R.1
Gallegos, J.2
Vallot, C.3
Castoro, R.J.4
Chung, W.5
Maegawa, S.6
Oki, Y.7
Kondo, Y.8
Jelinek, J.9
Shen, L.10
-
17
-
-
0020699979
-
Hypomethylation distinguishes genes of some human cancers from their normal counterparts
-
DOI 10.1038/301089a0
-
Feinberg AP, Vogelstein B. 1983. Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature 301: 89-92. (Pubitemid 13154475)
-
(1983)
Nature
, vol.301
, Issue.5895
, pp. 89-92
-
-
Feinberg, A.P.1
Vogelstein, B.2
-
18
-
-
51349105905
-
Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line
-
Gal-Yam EN, Egger G, Iniguez L, Holster H, Einarsson S, Zhang X, Lin JC, Liang G, Jones PA, Tanay A. 2008. Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line. Proc Natl Acad Sci 105: 12979-12984.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 12979-12984
-
-
Gal-Yam, E.N.1
Egger, G.2
Iniguez, L.3
Holster, H.4
Einarsson, S.5
Zhang, X.6
Lin, J.C.7
Liang, G.8
Jones, P.A.9
Tanay, A.10
-
19
-
-
0021101229
-
The 5-methylcytosine content of DNA from human tumors
-
Gama-Sosa MA, Slagel VA, Trewyn RW, Oxenhandler R, Kuo KC, Gehrke CW, Ehrlich M. 1983. The 5-methylcytosine content of DNA from human tumors. Nucleic Acids Res 11: 6883-6894.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 6883-6894
-
-
Gama-Sosa, M.A.1
Slagel, V.A.2
Trewyn, R.W.3
Oxenhandler, R.4
Kuo, K.C.5
Gehrke, C.W.6
Ehrlich, M.7
-
20
-
-
33846192840
-
The CpG Island Methylator Phenotype and Chromosomal Instability Are Inversely Correlated in Sporadic Colorectal Cancer
-
DOI 10.1053/j.gastro.2006.09.018, PII S0016508506020786
-
Goel A, Nagasaka T, Arnold CN, Inoue T, Hamilton C, Niedzwiecki D, Compton C, Mayer RJ, Goldberg R, Bertagnolli MM, et al. 2007. The CpG island methylator phenotype and chromosomal instability are inversely correlated in sporadic colorectal cancer. Gastroenterology 132: 127-138. (Pubitemid 46108731)
-
(2007)
Gastroenterology
, vol.132
, Issue.1
, pp. 127-138
-
-
Goel, A.1
Nagasaka, T.2
Arnold, C.N.3
Inoue, T.4
Hamilton, C.5
Niedzwiecki, D.6
Compton, C.7
Mayer, R.J.8
Goldberg, R.9
Bertagnolli, M.M.10
Boland, C.R.11
-
21
-
-
77249141762
-
V600Ein colorectal cancer by DNA methylation profiling
-
doi: 10.1371/journal.pone.0008357
-
V600E in colorectal cancer by DNA methylation profiling. PLoS ONE 4: e8357. doi: 10.1371/journal.pone.0008357.
-
(2009)
PLoS ONE
, vol.4
-
-
Hinoue, T.1
Weisenberger, D.J.2
Pan, F.3
Campan, M.4
Kim, M.5
Young, J.6
Whitehall, V.L.7
Leggett, B.A.8
Laird, P.W.9
-
22
-
-
52949118548
-
Model-based clustering of DNA methylation array data: A recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions
-
doi: 10.1186/1471-2105-9-365
-
Houseman EA, Christensen BC, Yeh RF, Marsit CJ, Karagas MR, Wrensch M, Nelson HH, Wiemels J, Zheng S, Wiencke JK, et al. 2008. Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions. BMC Bioinformatics 9: 365. doi: 10.1186/1471-2105-9-365.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 365
-
-
Houseman, E.A.1
Christensen, B.C.2
Yeh, R.F.3
Marsit, C.J.4
Karagas, M.R.5
Wrensch, M.6
Nelson, H.H.7
Wiemels, J.8
Zheng, S.9
Wiencke, J.K.10
-
23
-
-
79952539026
-
Sequential DNA methylation changes are associated with DNMT3B overexpression in colorectal neoplastic progression
-
Ibrahim AE, Arends MJ, Silva AL, Wyllie AH, Greger L, Ito Y, Vowler SL, Huang TH, Tavare S, Murrell A, et al. 2011. Sequential DNA methylation changes are associated with DNMT3B overexpression in colorectal neoplastic progression. Gut 60: 499-508.
-
(2011)
Gut
, vol.60
, pp. 499-508
-
-
Ibrahim, A.E.1
Arends, M.J.2
Silva, A.L.3
Wyllie, A.H.4
Greger, L.5
Ito, Y.6
Vowler, S.L.7
Huang, T.H.8
Tavare, S.9
Murrell, A.10
-
24
-
-
33845608798
-
Classification of colorectal cancer based on correlation of clinical, morphological and molecular features
-
DOI 10.1111/j.1365-2559.2006.02549.x
-
Jass JR. 2007. Classification of colorectal cancer based on correlation of clinical, morphological and molecular features. Histopathology 50: 113-130. (Pubitemid 44953403)
-
(2007)
Histopathology
, vol.50
, Issue.1
, pp. 113-130
-
-
Jass, J.R.1
-
25
-
-
44449134715
-
DACT3 Is an Epigenetic Regulator of Wnt/beta-Catenin Signaling in Colorectal Cancer and Is a Therapeutic Target of Histone Modifications
-
DOI 10.1016/j.ccr.2008.04.019, PII S1535610808001542
-
Jiang X, Tan J, Li J, Kivimae S, Yang X, Zhuang L, Lee PL, Chan MT, Stanton LW, Liu ET, et al. 2008. DACT3 is an epigenetic regulator of Wnt/beta-catenin signaling in colorectal cancer and is a therapeutic target of histone modifications. Cancer Cell 13: 529-541. (Pubitemid 351766796)
-
(2008)
Cancer Cell
, vol.13
, Issue.6
, pp. 529-541
-
-
Jiang, X.1
Tan, J.2
Li, J.3
Kivimae, S.4
Yang, X.5
Zhuang, L.6
Lee, P.L.7
Chan, M.T.W.8
Stanton, L.W.9
Liu, E.T.10
Cheyette, B.N.R.11
Yu, Q.12
-
26
-
-
33847065486
-
The Epigenomics of Cancer
-
DOI 10.1016/j.cell.2007.01.029, PII S0092867407001274
-
Jones PA, Baylin SB. 2007. The epigenomics of cancer. Cell 128: 683-692. (Pubitemid 46273572)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 683-692
-
-
Jones, P.A.1
Baylin, S.B.2
-
27
-
-
44349131472
-
Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation
-
DOI 10.1038/ng.159, PII NG159
-
Kondo Y, Shen L, Cheng AS, Ahmed S, Boumber Y, Charo C, Yamochi T, Urano T, Furukawa K, Kwabi-Addo B, et al. 2008. Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation. Nat Genet 40: 741-750. (Pubitemid 351748874)
-
(2008)
Nature Genetics
, vol.40
, Issue.6
, pp. 741-750
-
-
Kondo, Y.1
Shen, L.2
Cheng, A.S.3
Ahmed, S.4
Boumber, Y.5
Charo, C.6
Yamochi, T.7
Urano, T.8
Furukawa, K.9
Kwabi-Addo, B.10
Gold, D.L.11
Sekido, Y.12
Huang, T.H.-M.13
Issa, J.-P.J.14
-
28
-
-
55449105221
-
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
-
doi: 10.1371/journal.pgen.1000242
-
Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, et al. 2008. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet 4: e1000242. doi: 10.1371/journal.pgen.1000242.
-
(2008)
PLoS Genet
, vol.4
-
-
Ku, M.1
Koche, R.P.2
Rheinbay, E.3
Mendenhall, E.M.4
Endoh, M.5
Mikkelsen, T.S.6
Presser, A.7
Nusbaum, C.8
Xie, X.9
Chi, A.S.10
-
29
-
-
77951647898
-
Role of the serrated pathway in colorectal cancer pathogenesis
-
Leggett B, Whitehall V. 2010. Role of the serrated pathway in colorectal cancer pathogenesis. Gastroenterology 138: 2088-2100.
-
(2010)
Gastroenterology
, vol.138
, pp. 2088-2100
-
-
Leggett, B.1
Whitehall, V.2
-
30
-
-
77955010927
-
Cigarette smoking and colorectal cancer risk by molecularly defined subtypes
-
Limsui D, Vierkant RA, Tillmans LS, Wang AH, Weisenberger DJ, Laird PW, Lynch CF, Anderson KE, French AJ, Haile RW, et al. 2010. Cigarette smoking and colorectal cancer risk by molecularly defined subtypes. J Natl Cancer Inst 102: 1012-1022.
-
(2010)
J Natl Cancer Inst
, vol.102
, pp. 1012-1022
-
-
Limsui, D.1
Vierkant, R.A.2
Tillmans, L.S.3
Wang, A.H.4
Weisenberger, D.J.5
Laird, P.W.6
Lynch, C.F.7
Anderson, K.E.8
French, A.J.9
Haile, R.W.10
-
31
-
-
62349119224
-
Epigenetic profiling reveals etiologically distinct patterns of DNA methylation in head and neck squamous cell carcinoma
-
Marsit CJ, Christensen BC, Houseman EA, Karagas MR, Wrensch MR, Yeh RF, Nelson HH, Wiemels JL, Zheng S, Posner MR, et al. 2009. Epigenetic profiling reveals etiologically distinct patterns of DNA methylation in head and neck squamous cell carcinoma. Carcinogenesis 30: 416-422.
-
(2009)
Carcinogenesis
, vol.30
, pp. 416-422
-
-
Marsit, C.J.1
Christensen, B.C.2
Houseman, E.A.3
Karagas, M.R.4
Wrensch, M.R.5
Yeh, R.F.6
Nelson, H.H.7
Wiemels, J.L.8
Zheng, S.9
Posner, M.R.10
-
32
-
-
79952763964
-
DNA methylation array analysis identifies profiles of blood-derived DNA methylation associated with bladder cancer
-
Marsit CJ, Koestler DC, Christensen BC, Karagas MR, Houseman EA, Kelsey KT. 2011. DNA methylation array analysis identifies profiles of blood-derived DNA methylation associated with bladder cancer. J Clin Oncol 29: 1133-1139.
-
(2011)
J Clin Oncol
, vol.29
, pp. 1133-1139
-
-
Marsit, C.J.1
Koestler, D.C.2
Christensen, B.C.3
Karagas, M.R.4
Houseman, E.A.5
Kelsey, K.T.6
-
33
-
-
34848911647
-
DNA methylation: The nuts and bolts of repression
-
DOI 10.1002/jcp.21224
-
Miranda TB, Jones PA. 2007. DNA methylation: The nuts and bolts of repression. J Cell Physiol 213: 384-390. (Pubitemid 47509717)
-
(2007)
Journal of Cellular Physiology
, vol.213
, Issue.2
, pp. 384-390
-
-
Miranda, T.B.1
Jones, P.A.2
-
34
-
-
0038724494
-
Consensus Clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
-
Monti S, Tamayo P, Mesirov J, Golub T. 2003. Consensus Clustering: A resampling-based method for class discovery and visualization of gene expression microarray data. Machine Learning J 52: 91-118.
-
(2003)
Machine Learning J
, vol.52
, pp. 91-118
-
-
Monti, S.1
Tamayo, P.2
Mesirov, J.3
Golub, T.4
-
35
-
-
77952108366
-
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
-
Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP, Pan F, Pelloski CE, Sulman EP, Bhat KP, et al. 2010. Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17: 510-522.
-
(2010)
Cancer Cell
, vol.17
, pp. 510-522
-
-
Noushmehr, H.1
Weisenberger, D.J.2
Diefes, K.3
Phillips, H.S.4
Pujara, K.5
Berman, B.P.6
Pan, F.7
Pelloski, C.E.8
Sulman, E.P.9
Bhat, K.P.10
-
36
-
-
35948935265
-
Hyperplastic and Serrated Polyps of the Colorectum
-
DOI 10.1016/j.gtc.2007.08.007, PII S0889855307000842, Pathology and Clinical Relevance of Neoplastic Precursor Lesions of the Gastrointestinal Tract, Liver, and Pancreaticobiliary System
-
O'Brien MJ. 2007. Hyperplastic and serrated polyps of the colorectum. Gastroenterol Clin North Am 36: 947-968. (Pubitemid 350064454)
-
(2007)
Gastroenterology Clinics of North America
, vol.36
, Issue.4
, pp. 947-968
-
-
O'Brien, M.J.1
-
37
-
-
33749069927
-
CpG island methylator phenotype-low (CIMP-low) in colorectal cancer: Possible associations with male sex and KRAS mutations
-
DOI 10.2353/jmoldx.2006.060082
-
Ogino S, Kawasaki T, Kirkner GJ, Loda M, Fuchs CS. 2006. CpG island methylator phenotype-low (CIMP-low) in colorectal cancer: Possible associations with male sex and KRAS mutations. J Mol Diagn 8: 582-588. (Pubitemid 44774157)
-
(2006)
Journal of Molecular Diagnostics
, vol.8
, Issue.5
, pp. 582-588
-
-
Ogino, S.1
Kawasaki, T.2
Kirkner, G.J.3
Loda, M.4
Fuchs, C.S.5
-
38
-
-
34249825736
-
Molecular correlates with MGMT promoter methylation and silencing support CpG island methylator phenotype-low (CIMP-low) in colorectal cancer
-
DOI 10.1136/gut.2007.119750
-
Ogino S, Kawasaki T, Kirkner GJ, Suemoto Y, Meyerhardt JA, Fuchs CS. 2007. Molecular correlates with MGMT promoter methylation and silencing support CpG island methylator phenotype-low (CIMP-low) in colorectal cancer. Gut 56: 1564-1571. (Pubitemid 350033195)
-
(2007)
Gut
, vol.56
, Issue.11
, pp. 1564-1571
-
-
Ogino, S.1
Kawasaki, T.2
Kirkner, G.J.3
Suemoto, Y.4
Meyerhardt, J.A.5
Fuchs, C.S.6
-
39
-
-
33846569960
-
A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing
-
Ohm JE, McGarvey KM, Yu X, Cheng L, Schuebel KE, Cope L, Mohammad HP, Chen W, Daniel VC, Yu W, et al. 2007. A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. Nat Genet 39: 237-242.
-
(2007)
Nat Genet
, vol.39
, pp. 237-242
-
-
Ohm, J.E.1
McGarvey, K.M.2
Yu, X.3
Cheng, L.4
Schuebel, K.E.5
Cope, L.6
Mohammad, H.P.7
Chen, W.8
Daniel, V.C.9
Yu, W.10
-
40
-
-
77951627056
-
The chromosomal instability pathway in colon cancer
-
Pino MS, Chung DC. 2010. The chromosomal instability pathway in colon cancer. Gastroenterology 138: 2059-2072.
-
(2010)
Gastroenterology
, vol.138
, pp. 2059-2072
-
-
Pino, M.S.1
Chung, D.C.2
-
41
-
-
58149395035
-
Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells
-
Rodriguez J, Munoz M, Vives L, Frangou CG, Groudine M, Peinado MA. 2008. Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells. Proc Natl Acad Sci 105: 19809-19814.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 19809-19814
-
-
Rodriguez, J.1
Munoz, M.2
Vives, L.3
Frangou, C.G.4
Groudine, M.5
Peinado, M.A.6
-
42
-
-
33846649587
-
Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer
-
DOI 10.1038/ng1950, PII NG1950
-
Schlesinger Y, Straussman R, Keshet I, Farkash S, Hecht M, Zimmerman J, Eden E, Yakhini Z, Ben-Shushan E, Reubinoff BE, et al. 2007. Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer. Nat Genet 39: 232-236. (Pubitemid 46184355)
-
(2007)
Nature Genetics
, vol.39
, Issue.2
, pp. 232-236
-
-
Schlesinger, Y.1
Straussman, R.2
Keshet, I.3
Farkash, S.4
Hecht, M.5
Zimmerman, J.6
Eden, E.7
Yakhini, Z.8
Ben-Shushan, E.9
Reubinoff, B.E.10
Bergman, Y.11
Simon, I.12
Cedar, H.13
-
43
-
-
36749025213
-
Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer
-
DOI 10.1073/pnas.0704652104
-
Shen L, Toyota M, Kondo Y, Lin E, Zhang L, Guo Y, Hernandez NS, Chen X, Ahmed S, Konishi K, et al. 2007. Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer. Proc Natl Acad Sci 104: 18654-18659. (Pubitemid 350210752)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.47
, pp. 18654-18659
-
-
Shen, L.1
Toyota, M.2
Kondo, Y.3
Lin, E.4
Zhang, L.5
Guo, Y.6
Hernandez, N.S.7
Chen, X.8
Ahmed, S.9
Konishi, K.10
Hamilton, S.R.11
Issa, J.-P.J.12
-
44
-
-
77950900898
-
IGFBP7 is a p53-responsive gene specifically silenced in colorectal cancer with CpG island methylator phenotype
-
Suzuki H, Igarashi S, Nojima M, Maruyama R, Yamamoto E, Kai M, Akashi H, Watanabe Y, Yamamoto H, Sasaki Y, et al. 2010. IGFBP7 is a p53-responsive gene specifically silenced in colorectal cancer with CpG island methylator phenotype. Carcinogenesis 31: 342-349.
-
(2010)
Carcinogenesis
, vol.31
, pp. 342-349
-
-
Suzuki, H.1
Igarashi, S.2
Nojima, M.3
Maruyama, R.4
Yamamoto, E.5
Kai, M.6
Akashi, H.7
Watanabe, Y.8
Yamamoto, H.9
Sasaki, Y.10
-
46
-
-
67649506174
-
Genetic prognostic and predictive markers in colorectal cancer
-
Walther A, Johnstone E, Swanton C, Midgley R, Tomlinson I, Kerr D. 2009. Genetic prognostic and predictive markers in colorectal cancer. Nat Rev Cancer 9: 489-499.
-
(2009)
Nat Rev Cancer
, vol.9
, pp. 489-499
-
-
Walther, A.1
Johnstone, E.2
Swanton, C.3
Midgley, R.4
Tomlinson, I.5
Kerr, D.6
-
47
-
-
33745541234
-
CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer
-
DOI 10.1038/ng1834, PII N1834
-
Weisenberger DJ, Siegmund KD, Campan M, Young J, Long TI, Faasse MA, Kang GH, Widschwendter M, Weener D, Buchanan D, et al. 2006. CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat Genet 38: 787-793. (Pubitemid 43980599)
-
(2006)
Nature Genetics
, vol.38
, Issue.7
, pp. 787-793
-
-
Weisenberger, D.J.1
Siegmund, K.D.2
Campan, M.3
Young, J.4
Long, T.I.5
Faasse, M.A.6
Kang, G.H.7
Widschwendter, M.8
Weener, D.9
Buchanan, D.10
Koh, H.11
Simms, L.12
Barker, M.13
Leggett, B.14
Levine, J.15
Kim, M.16
French, A.J.17
Thibodeau, S.N.18
Jass, J.19
Haile, R.20
Laird, P.W.21
more..
-
48
-
-
33846576622
-
Epigenetic stem cell signature in cancer
-
DOI 10.1038/ng1941, PII NG1941
-
Widschwendter M, Fiegl H, Egle D, Mueller-Holzner E, Spizzo G, Marth C, Weisenberger DJ, Campan M, Young J, Jacobs I, et al. 2007. Epigenetic stem cell signature in cancer. Nat Genet 39: 157-158. (Pubitemid 46184343)
-
(2007)
Nature Genetics
, vol.39
, Issue.2
, pp. 157-158
-
-
Widschwendter, M.1
Fiegl, H.2
Egle, D.3
Mueller-Holzner, E.4
Spizzo, G.5
Marth, C.6
Weisenberger, D.J.7
Campan, M.8
Young, J.9
Jacobs, I.10
Laird, P.W.11
-
49
-
-
36248962105
-
The genomic landscapes of human breast and colorectal cancers
-
DOI 10.1126/science.1145720
-
Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, et al. 2007. The genomic landscapes of human breast and colorectal cancers. Science 318: 1108-1113. (Pubitemid 350134889)
-
(2007)
Science
, vol.318
, Issue.5853
, pp. 1108-1113
-
-
Wood, L.D.1
Parsons, D.W.2
Jones, S.3
Lin, J.4
Sjoblom, T.5
Leary, R.J.6
Shen, D.7
Boca, S.M.8
Barber, T.9
Ptak, J.10
Silliman, N.11
Szabo, S.12
Dezso, Z.13
Ustyanksky, V.14
Nikolskaya, T.15
Nikolsky, Y.16
Karchin, R.17
Wilson, P.A.18
Kaminker, J.S.19
Zhang, Z.20
Croshaw, R.21
Willis, J.22
Dawson, D.23
Shipitsin, M.24
Willson, J.K.V.25
Sukumar, S.26
Polyak, K.27
Ben, H.P.28
Pethiyagoda, C.L.29
Pant, P.V.K.30
Ballinger, D.G.31
Sparks, A.B.32
Hartigan, J.33
Smith, D.R.34
Suh, E.35
Papadopoulos, N.36
Buckhaults, P.37
Markowitz, S.D.38
Parmigiani, G.39
Kinzler, K.W.40
Velculescu, V.E.41
Vogelstein, B.42
more..
-
50
-
-
74949089956
-
Three DNA methylation epigenotypes in human colorectal cancer
-
Yagi K, Akagi K, Hayashi H, Nagae G, Tsuji S, Isagawa T, Midorikawa Y, Nishimura Y, Sakamoto H, Seto Y, et al. 2010. Three DNA methylation epigenotypes in human colorectal cancer. Clin Cancer Res 16: 21-33.
-
(2010)
Clin Cancer Res
, vol.16
, pp. 21-33
-
-
Yagi, K.1
Akagi, K.2
Hayashi, H.3
Nagae, G.4
Tsuji, S.5
Isagawa, T.6
Midorikawa, Y.7
Nishimura, Y.8
Sakamoto, H.9
Seto, Y.10
-
51
-
-
33750519632
-
The case for a genetic predisposition to serrated neoplasia in the colorectum: Hypothesis and review of the literature
-
DOI 10.1158/1055-9965.EPI-06-0164
-
Young J, Jass JR. 2006. The case for a genetic predisposition to serrated neoplasia in the colorectum: hypothesis and review of the literature. Cancer Epidemiol Biomarkers Prev 15: 1778-1784. (Pubitemid 44664248)
-
(2006)
Cancer Epidemiology Biomarkers and Prevention
, vol.15
, Issue.10
, pp. 1778-1784
-
-
Young, J.1
Jass, J.R.2
-
52
-
-
0035793108
-
HPP1: A transmembrane protein-encoding gene commonly methylated in colorectal polyps and cancers
-
DOI 10.1073/pnas.011415298
-
Young J, Biden KG, Simms LA, Huggard P, Karamatic R, Eyre HJ, Sutherland GR, Herath N, Barker M, Anderson GJ, et al. 2001. HPP1: A transmembrane protein-encoding gene commonly methylated in colorectal polyps and cancers. Proc Natl Acad Sci 98: 265-270. (Pubitemid 32095898)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.1
, pp. 265-270
-
-
Young, J.1
Biden, K.G.2
Simms, L.A.3
Huggard, P.4
Karamatic, R.5
Eyre, H.J.6
Sutherland, G.R.7
Herath, N.8
Barker, M.9
Anderson, G.J.10
Fitzpatrick, D.R.11
Ramm, G.A.12
Jass, J.R.13
Leggett, B.A.14
-
53
-
-
34948834584
-
Serrated pathway colorectal cancer in the population: Genetic consideration
-
DOI 10.1136/gut.2007.126870
-
Young J, Jenkins M, Parry S, Young B, Nancarrow D, English D, Giles G, Jass J. 2007. Serrated pathway colorectal cancer in the population: genetic consideration. Gut 56: 1453-1459. (Pubitemid 47517843)
-
(2007)
Gut
, vol.56
, Issue.10
, pp. 1453-1459
-
-
Young, J.1
Jenkins, M.2
Parry, S.3
Young, B.4
Nancarrow, D.5
English, D.6
Giles, G.7
Jass, J.8
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