-
1
-
-
40649115979
-
The mechanism of RNase III action: How dicer dices
-
Ji, X. (2008) The mechanism of RNase III action: how dicer dices. Curr. Top. Microbiol. Immunol., 320, 99-116.
-
(2008)
Curr. Top. Microbiol. Immunol.
, vol.320
, pp. 99-116
-
-
Ji, X.1
-
2
-
-
0036008547
-
Control of developmental timing by small temporal RNAs: A paradigm for RNA-mediated regulation of gene expression
-
Banerjee, D. and Slack, F. (2002) Control of developmental timing by small temporal RNAs: a paradigm for RNA-mediated regulation of gene expression. Bioessays, 24, 119-129.
-
(2002)
Bioessays
, vol.24
, pp. 119-129
-
-
Banerjee, D.1
Slack, F.2
-
3
-
-
0037711199
-
The dsRNA binding protein family: Critical roles, diverse cellular functions
-
Saunders, L. R. and Barber, G. N. (2003) The dsRNA binding protein family: critical roles, diverse cellular functions. FASEB J., 17, 961-983.
-
(2003)
FASEB J.
, vol.17
, pp. 961-983
-
-
Saunders, L.R.1
Barber, G.N.2
-
4
-
-
0346848758
-
RNA interference: Biology, mechanism, and applications
-
Agrawal, N., Dasaradhi, P. V., Mohmmed, A., Malhotra, P., Bhatnagar, R. K. and Mukherjee, S. K. (2003) RNA interference: biology, mechanism, and applications. Microbiol. Mol. Biol. Rev., 67, 657-685.
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 657-685
-
-
Agrawal, N.1
Dasaradhi, P.V.2
Mohmmed, A.3
Malhotra, P.4
Bhatnagar, R.K.5
Mukherjee, S.K.6
-
6
-
-
2342456436
-
Lobotomy of genes: Use of RNA interference in neuroscience
-
Holen, T. and Mobbs, C. V. (2004) Lobotomy of genes: use of RNA interference in neuroscience. Neuroscience, 126, 1-7.
-
(2004)
Neuroscience
, vol.126
, pp. 1-7
-
-
Holen, T.1
Mobbs, C.V.2
-
7
-
-
22144447822
-
RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe
-
Martienssen, R. A., Zaratiegui, M. and Goto, D. B. (2005) RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends Genet., 21, 450-456.
-
(2005)
Trends Genet.
, vol.21
, pp. 450-456
-
-
Martienssen, R.A.1
Zaratiegui, M.2
Goto, D.B.3
-
8
-
-
14844362869
-
RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast
-
Petrie, V. J., Wuitschick, J. D., Givens, C. D., Kosinski, A. M. and Partridge, J. F. (2005) RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast. Mol. Cell. Biol., 25, 2331-2346.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 2331-2346
-
-
Petrie, V.J.1
Wuitschick, J.D.2
Givens, C.D.3
Kosinski, A.M.4
Partridge, J.F.5
-
9
-
-
11844277040
-
Global effects on gene expression in fission yeast by silencing and RNA interference machineries
-
Hansen, K. R., Burns, G., Mata, J., Volpe, T. A., Martienssen, R. A., Bahler, J. and Thon, G. (2005) Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Mol. Cell. Biol., 25, 590-601.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 590-601
-
-
Hansen, K.R.1
Burns, G.2
Mata, J.3
Volpe, T.A.4
Martienssen, R.A.5
Bahler, J.6
Thon, G.7
-
10
-
-
0035155389
-
The RNase III family: A conserved structure and expanding functions in eukaryotic dsRNA metabolism
-
Lamontagne, B., Larose, S., Boulanger, J. and Elela, S. A. (2001) The RNase III family: a conserved structure and expanding functions in eukaryotic dsRNA metabolism. Curr. Issues Mol. Biol., 3, 71-78.
-
(2001)
Curr. Issues Mol. Biol.
, vol.3
, pp. 71-78
-
-
Lamontagne, B.1
Larose, S.2
Boulanger, J.3
Elela, S.A.4
-
11
-
-
16244389311
-
Genome-wide prediction and analysis of yeast RNase III-dependent snoRNA processing signals
-
Ghazal, G., Ge, D., Gervais-Bird, J., Gagnon, J. and Abou Elela, S. (2005) Genome-wide prediction and analysis of yeast RNase III-dependent snoRNA processing signals. Mol. Cell. Biol., 25, 2981-2994.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 2981-2994
-
-
Ghazal, G.1
Ge, D.2
Gervais-Bird, J.3
Gagnon, J.4
Elela, A.S.5
-
12
-
-
12544255425
-
RNase III-mediated silencing of a glucose-dependent repressor in yeast
-
Ge, D., Lamontagne, B. and Abou Elela, S. (2005) RNase III-mediated silencing of a glucose-dependent repressor in yeast. Curr. Biol., 15, 140-145.
-
(2005)
Curr. Biol.
, vol.15
, pp. 140-145
-
-
Ge, D.1
Lamontagne, B.2
Elela, A.S.3
-
13
-
-
0032941868
-
Feasting, fasting and fermenting. Glucose sensing in yeast and other cells
-
Johnston, M. (1999) Feasting, fasting and fermenting. Glucose sensing in yeast and other cells. Trends Genet., 15, 29-33.
-
(1999)
Trends Genet.
, vol.15
, pp. 29-33
-
-
Johnston, M.1
-
14
-
-
0035336970
-
Glucose-sensing mechanisms in eukaryotic cells
-
Rolland, F., Winderickx, J. and Thevelein, J. M. (2001) Glucose-sensing mechanisms in eukaryotic cells. Trends Biochem. Sci., 26, 310-317.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 310-317
-
-
Rolland, F.1
Winderickx, J.2
Thevelein, J.M.3
-
15
-
-
4644341837
-
The eukaryotic plasma membrane as a nutrient-sensing device
-
Holsbeeks, I., Lagatie, O., Van Nuland, A., Van de Velde, S. and Thevelein, J. M. (2004) The eukaryotic plasma membrane as a nutrient-sensing device. Trends Biochem. Sci., 29, 556-564.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 556-564
-
-
Holsbeeks, I.1
Lagatie, O.2
Van Nuland, A.3
Van De Velde, S.4
Thevelein, J.M.5
-
16
-
-
0345687947
-
Multi-level response of the yeast genome to glucose
-
Gelade, R., Van de Velde, S., Van Dijck, P. and Thevelein, J. M. (2003) Multi-level response of the yeast genome to glucose. Genome Biol., 4, 233.
-
(2003)
Genome Biol.
, vol.4
, pp. 233
-
-
Gelade, R.1
Van De Velde, S.2
Van Dijck, P.3
Thevelein, J.M.4
-
17
-
-
0036281361
-
Glucose-sensing and-signalling mechanisms in yeast
-
Rolland, F., Winderickx, J. and Thevelein, J. M. (2002) Glucose-sensing and-signalling mechanisms in yeast. FEMS Yeast Res., 2, 183-201.
-
(2002)
FEMS Yeast Res.
, vol.2
, pp. 183-201
-
-
Rolland, F.1
Winderickx, J.2
Thevelein, J.M.3
-
18
-
-
0034799351
-
Sensors of extracellular nutrients in Saccharomyces cerevisiae
-
Forsberg, H. and Ljungdahl, P. O. (2001) Sensors of extracellular nutrients in Saccharomyces cerevisiae. Curr. Genet., 40, 91-109.
-
(2001)
Curr. Genet.
, vol.40
, pp. 91-109
-
-
Forsberg, H.1
Ljungdahl, P.O.2
-
19
-
-
0032865543
-
Function and regulation of yeast hexose transporters
-
Ozcan, S. and Johnston, M. (1999) Function and regulation of yeast hexose transporters. Microbiol. Mol. Biol. Rev., 63, 554-569.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 554-569
-
-
Ozcan, S.1
Johnston, M.2
-
20
-
-
2342528555
-
Mechanisms of glucose sensing and multiplicity of glucose sensors
-
Thorens, B. (2004) Mechanisms of glucose sensing and multiplicity of glucose sensors. Ann. Endocrinol., 65, 9-12.
-
(2004)
Ann. Endocrinol.
, vol.65
, pp. 9-12
-
-
Thorens, B.1
-
21
-
-
0031028168
-
The C-terminal domain of Snf3p is sufficient to complement the growth defect of snf3 null mutations in Saccharomyces cerevisiae: SNF3 functions in glucose recognition
-
Coons, D. M., Vagnoli, P. and Bisson, L. F. (1997) The C-terminal domain of Snf3p is sufficient to complement the growth defect of snf3 null mutations in Saccharomyces cerevisiae: SNF3 functions in glucose recognition. Yeast, 13, 9-20.
-
(1997)
Yeast
, vol.13
, pp. 9-20
-
-
Coons, D.M.1
Vagnoli, P.2
Bisson, L.F.3
-
22
-
-
0025021668
-
Mutational analysis of the SNF3 glucose transporter of Saccharomyces cerevisiae
-
Marshall-Carlson, L., Celenza, J. L., Laurent, B. C. and Carlson, M. (1990) Mutational analysis of the SNF3 glucose transporter of Saccharomyces cerevisiae. Mol. Cell. Biol., 10, 1105-1115.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 1105-1115
-
-
Marshall-Carlson, L.1
Celenza, J.L.2
Laurent, B.C.3
Carlson, M.4
-
23
-
-
15544364487
-
How the Rgt1 transcription factor of Saccharomyces cerevisiae is regulated by glucose
-
Polish, J. A., Kim, J. H. and Johnston, M. (2005) How the Rgt1 transcription factor of Saccharomyces cerevisiae is regulated by glucose. Genetics, 169, 583-594.
-
(2005)
Genetics
, vol.169
, pp. 583-594
-
-
Polish, J.A.1
Kim, J.H.2
Johnston, M.3
-
24
-
-
0036727097
-
Hxt-carrier-mediated glucose efflux upon exposure of Saccharomyces cerevisiae to excess maltose
-
Jansen, M. L., De Winde, J. H. and Pronk, J. T. (2002) Hxt-carrier-mediated glucose efflux upon exposure of Saccharomyces cerevisiae to excess maltose. Appl. Environ. Microbiol., 68, 4259-4265.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4259-4265
-
-
Jansen, M.L.1
De Winde, J.H.2
Pronk, J.T.3
-
25
-
-
0028872732
-
Three different regulatory mechanisms enable yeast hexose transporter (HXT) genes to be induced by different levels of glucose
-
Ozcan, S. and Johnston, M. (1995) Three different regulatory mechanisms enable yeast hexose transporter (HXT) genes to be induced by different levels of glucose. Mol. Cell. Biol., 15, 1564-1572.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 1564-1572
-
-
Ozcan, S.1
Johnston, M.2
-
26
-
-
0033962922
-
Mth1 receives the signal given by the glucose sensors Snf3 and Rgt2 in Saccharomyces cerevisiae
-
Lafuente, M. J., Gancedo, C., Jauniaux, J. C. and Gancedo, J. M. (2000) Mth1 receives the signal given by the glucose sensors Snf3 and Rgt2 in Saccharomyces cerevisiae. Mol. Microbiol., 35, 161-172.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 161-172
-
-
Lafuente, M.J.1
Gancedo, C.2
Jauniaux, J.C.3
Gancedo, J.M.4
-
27
-
-
0142061170
-
Repression of transcription by Rgt1 in the absence of glucose requires Std1 and Mth1
-
Lakshmanan, J., Mosley, A. L. and Ozcan, S. (2003) Repression of transcription by Rgt1 in the absence of glucose requires Std1 and Mth1. Curr. Genet., 44, 19-25.
-
(2003)
Curr. Genet.
, vol.44
, pp. 19-25
-
-
Lakshmanan, J.1
Mosley, A.L.2
Ozcan, S.3
-
28
-
-
14644424616
-
Glucose as a hormone: Receptor-mediated glucose sensing in the yeast Saccharomyces cerevisiae
-
Johnston, M. and Kim, J. H. (2005) Glucose as a hormone: receptor-mediated glucose sensing in the yeast Saccharomyces cerevisiae. Biochem. Soc. Trans., 33, 247-252.
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 247-252
-
-
Johnston, M.1
Kim, J.H.2
-
29
-
-
58549084410
-
How Saccharomyces responds to nutrients
-
Zaman, S., Lippman, S. I., Zhao, X. and Broach, J. R. (2008) How Saccharomyces responds to nutrients. Annu. Rev. Genet., 42, 27-81.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 27-81
-
-
Zaman, S.1
Lippman, S.I.2
Zhao, X.3
Broach, J.R.4
-
30
-
-
0032619525
-
Roles of the AMP-activated/SNF1 protein kinase family in the response to cellular stress
-
Hardie, D. G. (1999) Roles of the AMP-activated/SNF1 protein kinase family in the response to cellular stress. Biochem. Soc. Symp., 64, 13-27.
-
(1999)
Biochem. Soc. Symp.
, vol.64
, pp. 13-27
-
-
Hardie, D.G.1
-
31
-
-
0029783926
-
Two zinc-finger-containing repressors are responsible for glucose repression of SUC2 expression
-
Lutfiyya, L. L. and Johnston, M. (1996) Two zinc-finger-containing repressors are responsible for glucose repression of SUC2 expression. Mol. Cell. Biol., 16, 4790-4797.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 4790-4797
-
-
Lutfiyya, L.L.1
Johnston, M.2
-
32
-
-
0032768263
-
The SNF1 kinase complex from Saccharomyces cerevisiae phosphorylates the transcriptional repressor protein Mig1p in vitro at four sites within or near regulatory domain 1
-
Smith, F. C., Davies, S. P., Wilson, W. A., Carling, D. and Hardie, D. G. (1999) The SNF1 kinase complex from Saccharomyces cerevisiae phosphorylates the transcriptional repressor protein Mig1p in vitro at four sites within or near regulatory domain 1. FEBS Lett., 453, 219-223.
-
(1999)
FEBS Lett.
, vol.453
, pp. 219-223
-
-
Smith, F.C.1
Davies, S.P.2
Wilson, W.A.3
Carling, D.4
Hardie, D.G.5
-
33
-
-
0033104140
-
Binding of the glucose-dependent Mig1p repressor to the GAL1 and GAL4 promoters in vivo: Regulationby glucose and chromatin structure
-
Frolova, E., Johnston, M. and Majors, J. (1999) Binding of the glucose-dependent Mig1p repressor to the GAL1 and GAL4 promoters in vivo: regulationby glucose and chromatin structure. Nucleic Acids Res., 27, 1350-1358.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1350-1358
-
-
Frolova, E.1
Johnston, M.2
Majors, J.3
-
34
-
-
0032519837
-
Negative control of the Mig1p repressor by Snf1p-dependent phosphorylation in the absence of glucose
-
Ostling, J. and Ronne, H. (1998) Negative control of the Mig1p repressor by Snf1p-dependent phosphorylation in the absence of glucose. Eur. J. Biochem., 252, 162-168.
-
(1998)
Eur. J. Biochem.
, vol.252
, pp. 162-168
-
-
Ostling, J.1
Ronne, H.2
-
35
-
-
0031016249
-
Expression of the SUC2 gene of Saccharomyces cerevisiae is induced by low levels of glucose
-
Ozcan, S., Vallier, L. G., Flick, J. S., Carlson, M. and Johnston, M. (1997) Expression of the SUC2 gene of Saccharomyces cerevisiae is induced by low levels of glucose. Yeast, 13, 127-137.
-
(1997)
Yeast
, vol.13
, pp. 127-137
-
-
Ozcan, S.1
Vallier, L.G.2
Flick, J.S.3
Carlson, M.4
Johnston, M.5
-
36
-
-
0021715020
-
Genes affecting the regulation of SUC2 gene expression by glucose repression in Saccharomyces cerevisiae
-
Neigeborn, L. and Carlson, M. (1984) Genes affecting the regulation of SUC2 gene expression by glucose repression in Saccharomyces cerevisiae. Genetics, 108, 845-858.
-
(1984)
Genetics
, vol.108
, pp. 845-858
-
-
Neigeborn, L.1
Carlson, M.2
-
37
-
-
0031761689
-
Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae
-
Lutfiyya, L. L., Iyer, V. R., DeRisi, J., DeVit, M. J., Brown, P. O. and Johnston, M. (1998) Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. Genetics, 150, 1377-1391.
-
(1998)
Genetics
, vol.150
, pp. 1377-1391
-
-
Lutfiyya, L.L.1
Iyer, V.R.2
DeRisi, J.3
DeVit, M.J.4
Brown, P.O.5
Johnston, M.6
-
38
-
-
0031825920
-
Multiple regulatory proteins mediate repression and activation by interaction with the yeast Mig1 binding site
-
Wu, J. and Trumbly, R. J. (1998) Multiple regulatory proteins mediate repression and activation by interaction with the yeast Mig1 binding site. Yeast, 14, 985-1000.
-
(1998)
Yeast
, vol.14
, pp. 985-1000
-
-
Wu, J.1
Trumbly, R.J.2
-
39
-
-
1242300132
-
Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae
-
Kaniak, A., Xue, Z., Macool, D., Kim, J. H. and Johnston, M. (2004) Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae. Eukaryot. Cell, 3, 221-231.
-
(2004)
Eukaryot. Cell
, vol.3
, pp. 221-231
-
-
Kaniak, A.1
Xue, Z.2
Macool, D.3
Kim, J.H.4
Johnston, M.5
-
40
-
-
60549088898
-
Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3
-
Westholm, J. O., Nordberg, N., Muren, E., Ameur, A., Komorowski, J. and Ronne, H. (2008) Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3. BMC Genomics, 9, 601.
-
(2008)
BMC Genomics
, vol.9
, pp. 601
-
-
Westholm, J.O.1
Nordberg, N.2
Muren, E.3
Ameur, A.4
Komorowski, J.5
Ronne, H.6
-
41
-
-
0035983107
-
The role of the 50 untranslated region (UTR) in glucose-dependent mRNA decay
-
De La Cruz, B. J., Prieto, S. and Scheffler, I. E. (2002) The role of the 50 untranslated region (UTR) in glucose-dependent mRNA decay. Yeast, 19, 887-902.
-
(2002)
Yeast
, vol.19
, pp. 887-902
-
-
De La Cruz, B.J.1
Prieto, S.2
Scheffler, I.E.3
-
42
-
-
0033965777
-
Differential post-transcriptional regulation of yeast mRNAs in response to high and low glucose concentrations
-
Yin, Z., Hatton, L. and Brown, A. J. (2000) Differential post-transcriptional regulation of yeast mRNAs in response to high and low glucose concentrations. Mol. Microbiol., 35, 553-565.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 553-565
-
-
Yin, Z.1
Hatton, L.2
Brown, A.J.3
-
43
-
-
77955929970
-
Inhibition of translation initiation following glucose depletion in yeast facilitates a rationalization of mRNA content
-
Lui, J., Campbell, S. G. and Ashe, M. P. (2010) Inhibition of translation initiation following glucose depletion in yeast facilitates a rationalization of mRNA content. Biochem. Soc. Trans., 38, 1131-1136.
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 1131-1136
-
-
Lui, J.1
Campbell, S.G.2
Ashe, M.P.3
-
44
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
Allmang, C., Kufel, J., Chanfreau, G., Mitchell, P., Petfalski, E. and Tollervey, D. (1999) Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J., 18, 5399-5410.
-
(1999)
EMBO J.
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
Kufel, J.2
Chanfreau, G.3
Mitchell, P.4
Petfalski, E.5
Tollervey, D.6
-
45
-
-
0038730985
-
MRNA decay: X (XRN1) marks the spot
-
Long, R. M. and McNally, M. T. (2003) mRNA decay: x (XRN1) marks the spot. Mol. Cell, 11, 1126-1128.
-
(2003)
Mol. Cell
, vol.11
, pp. 1126-1128
-
-
Long, R.M.1
McNally, M.T.2
-
46
-
-
0003666095
-
-
Academic Press, San Diego, CA, USA
-
Guthrie, C. and Fink, G. R. (1991) Guide to Yeast Genetics and Molecular Biology. Academic Press, San Diego, CA, USA.
-
(1991)
Guide to Yeast Genetics and Molecular Biology
-
-
Guthrie, C.1
Fink, G.R.2
-
48
-
-
70349765676
-
Yeast RNase III triggers polyadenylation-independent transcription termination
-
Ghazal, G., Gagnon, J., Jacques, P. E., Landry, J. R., Robert, F. and Elela, S. A. (2009) Yeast RNase III triggers polyadenylation-independent transcription termination. Mol. Cell, 36, 99-109.
-
(2009)
Mol. Cell
, vol.36
, pp. 99-109
-
-
Ghazal, G.1
Gagnon, J.2
Jacques, P.E.3
Landry, J.R.4
Robert, F.5
Elela, S.A.6
-
49
-
-
0344466724
-
An improved tetO promoter replacement system for regulating the expression of yeast genes
-
Yen, K., Gitsham, P., Wishart, J., Oliver, S. G. and Zhang, N. (2003) An improved tetO promoter replacement system for regulating the expression of yeast genes. Yeast, 20, 1255-1262.
-
(2003)
Yeast
, vol.20
, pp. 1255-1262
-
-
Yen, K.1
Gitsham, P.2
Wishart, J.3
Oliver, S.G.4
Zhang, N.5
-
50
-
-
0023034916
-
Yeast shuttle and integrative vectors with multiple cloning sites suitable for construction of lacZ fusions
-
Myers, A. M., Tzagoloff, A., Kinney, D. M. and Lusty, C. J. (1986) Yeast shuttle and integrative vectors with multiple cloning sites suitable for construction of lacZ fusions. Gene, 45, 299-310.
-
(1986)
Gene
, vol.45
, pp. 299-310
-
-
Myers, A.M.1
Tzagoloff, A.2
Kinney, D.M.3
Lusty, C.J.4
-
51
-
-
33947511027
-
RNase III-dependent regulation of yeast telomerase
-
Larose, S., Laterreur, N., Ghazal, G., Gagnon, J., Wellinger, R. J. and Elela, S. A. (2007) RNase III-dependent regulation of yeast telomerase. J. Biol. Chem., 282, 4373-4381.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 4373-4381
-
-
Larose, S.1
Laterreur, N.2
Ghazal, G.3
Gagnon, J.4
Wellinger, R.J.5
Elela, S.A.6
-
52
-
-
0034804434
-
Purification and characterization of Saccharomyces cerevisiae Rnt1p nuclease
-
Lamontagne, B. and Elela, S. A. (2001) Purification and characterization of Saccharomyces cerevisiae Rnt1p nuclease. Methods Enzymol., 342, 159-167.
-
(2001)
Methods Enzymol.
, vol.342
, pp. 159-167
-
-
Lamontagne, B.1
Elela, S.A.2
-
53
-
-
36849088754
-
Short RNA guides cleavage by eukaryotic RNase III
-
Lamontagne, B. and Abou Elela, S. (2007) Short RNA guides cleavage by eukaryotic RNase III. PLoS One, 2, e472.
-
(2007)
PLoS One
, vol.2
-
-
Lamontagne, B.1
Elela, A.S.2
-
54
-
-
2142658771
-
Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae
-
Keogh, M. C. and Buratowski, S. (2004) Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae. Methods Mol. Biol., 257, 1-16.
-
(2004)
Methods Mol. Biol.
, vol.257
, pp. 1-16
-
-
Keogh, M.C.1
Buratowski, S.2
-
55
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The gene ontology consortium
-
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
56
-
-
1842609455
-
Molecular requirements for duplex recognition and cleavage by eukaryotic RNase III: Discovery of an RNA-dependent DNA cleavage activity of yeast Rnt1p
-
Lamontagne, B., Hannoush, R. N., Damha, M. J. and Abou Elela, S. (2004) Molecular requirements for duplex recognition and cleavage by eukaryotic RNase III: discovery of an RNA-dependent DNA cleavage activity of yeast Rnt1p. J. Mol. Biol., 338, 401-418.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 401-418
-
-
Lamontagne, B.1
Hannoush, R.N.2
Damha, M.J.3
Elela, A.S.4
-
57
-
-
79251593842
-
The impact of MIG1 and/or MIG2 disruption on aerobic metabolism of succinate dehydrogenase negative Saccharomyces cerevisiae
-
Cao, H., Yue, M., Li, S., Bai, X., Zhao, X. and Du, Y. (2011) The impact of MIG1 and/or MIG2 disruption on aerobic metabolism of succinate dehydrogenase negative Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol., 89, 733-738.
-
(2011)
Appl. Microbiol. Biotechnol.
, vol.89
, pp. 733-738
-
-
Cao, H.1
Yue, M.2
Li, S.3
Bai, X.4
Zhao, X.5
Du, Y.6
-
58
-
-
62549126083
-
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
-
Yassour, M., Kaplan, T., Fraser, H. B., Levin, J. Z., Pfiffner, J., Adiconis, X., Schroth, G., Luo, S., Khrebtukova, I., Gnirke, A. et al. (2009) Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proc. Natl Acad. Sci. USA, 106, 3264-3269.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 3264-3269
-
-
Yassour, M.1
Kaplan, T.2
Fraser, H.B.3
Levin, J.Z.4
Pfiffner, J.5
Adiconis, X.6
Schroth, G.7
Luo, S.8
Khrebtukova, I.9
Gnirke, A.10
-
59
-
-
4744373127
-
Regulation and recognition of SCFGrr1 targets in the glucose and amino acid signaling pathways
-
Spielewoy, N., Flick, K., Kalashnikova, T. I., Walker, J. R. and Wittenberg, C. (2004) Regulation and recognition of SCFGrr1 targets in the glucose and amino acid signaling pathways. Mol. Cell. Biol., 24, 8994-9005.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 8994-9005
-
-
Spielewoy, N.1
Flick, K.2
Kalashnikova, T.I.3
Walker, J.R.4
Wittenberg, C.5
-
60
-
-
78649701863
-
Transcriptional regulation in yeast during diauxic shift and stationary phase
-
Galdieri, L., Mehrotra, S., Yu, S. and Vancura, A. (2010) Transcriptional regulation in yeast during diauxic shift and stationary phase. OMICS, 14, 629-638.
-
(2010)
OMICS
, vol.14
, pp. 629-638
-
-
Galdieri, L.1
Mehrotra, S.2
Yu, S.3
Vancura, A.4
-
61
-
-
27844566646
-
Glucose as a regulator of eukaryotic gene transcription
-
Towle, H. C. (2005) Glucose as a regulator of eukaryotic gene transcription. Trends Endocrinol. Metab., 16, 489-494.
-
(2005)
Trends Endocrinol. Metab.
, vol.16
, pp. 489-494
-
-
Towle, H.C.1
-
62
-
-
0026737363
-
Systematic mutational analysis of the yeast ACT1 gene
-
Wertman, K. F., Drubin, D. G. and Botstein, D. (1992) Systematic mutational analysis of the yeast ACT1 gene. Genetics, 132, 337-350.
-
(1992)
Genetics
, vol.132
, pp. 337-350
-
-
Wertman, K.F.1
Drubin, D.G.2
Botstein, D.3
-
64
-
-
15544364487
-
How the Rgt1 transcription factor of Saccharomyces cerevisiae is regulated by glucose
-
Polish, J. A., Kim, J. H. and Johnston, M. (2005) How the Rgt1 transcription factor of Saccharomyces cerevisiae is regulated by glucose. Genetics, 169, 583-594.
-
(2005)
Genetics
, vol.169
, pp. 583-594
-
-
Polish, J.A.1
Kim, J.H.2
Johnston, M.3
-
65
-
-
33646188087
-
Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil
-
Malagon, F., Kireeva, M. L., Shafer, B. K., Lubkowska, L., Kashlev, M. and Strathern, J. N. (2006) Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil. Genetics, 172, 2201-2209.
-
(2006)
Genetics
, vol.172
, pp. 2201-2209
-
-
Malagon, F.1
Kireeva, M.L.2
Shafer, B.K.3
Lubkowska, L.4
Kashlev, M.5
Strathern, J.N.6
-
66
-
-
0026512705
-
Glucose repression in the yeast Saccharomyces cerevisiae
-
Trumbly, R. J. (1992) Glucose repression in the yeast Saccharomyces cerevisiae. Mol. Microbiol., 6, 15-21.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 15-21
-
-
Trumbly, R.J.1
-
67
-
-
78049249838
-
A quantitative model of glucose signaling in yeast reveals an incoherent feed forward loop leading to a specific, transient pulse of transcription
-
Kuttykrishnan, S., Sabina, J., Langton, L. L., Johnston, M. and Brent, M. R. (2010) A quantitative model of glucose signaling in yeast reveals an incoherent feed forward loop leading to a specific, transient pulse of transcription. Proc. Natl Acad. Sci. USA, 107, 16743-16748.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 16743-16748
-
-
Kuttykrishnan, S.1
Sabina, J.2
Langton, L.L.3
Johnston, M.4
Brent, M.R.5
-
68
-
-
79955768436
-
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
-
Rabani, M., Levin, J. Z., Fan, L., Adiconis, X., Raychowdhury, R., Garber, M., Gnirke, A., Nusbaum, C., Hacohen, N., Friedman, N. et al. (2011) Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells. Nat. Biotechnol., 29, 436-442.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 436-442
-
-
Rabani, M.1
Levin, J.Z.2
Fan, L.3
Adiconis, X.4
Raychowdhury, R.5
Garber, M.6
Gnirke, A.7
Nusbaum, C.8
Hacohen, N.9
Friedman, N.10
-
69
-
-
70350367853
-
Asymmetric signal transduction through paralogs that comprise a genetic switch for sugar sensing in Saccharomyces cerevisiae
-
Sabina, J. and Johnston, M. (2009) Asymmetric signal transduction through paralogs that comprise a genetic switch for sugar sensing in Saccharomyces cerevisiae. J. Biol. Chem., 284, 29635-29643.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 29635-29643
-
-
Sabina, J.1
Johnston, M.2
-
70
-
-
0031768680
-
Posttranscriptional control of gene expression in yeast
-
McCarthy, J. E. (1998) Posttranscriptional control of gene expression in yeast. Microbiol. Mol. Biol. Rev., 62, 1492-1553.
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 1492-1553
-
-
McCarthy, J.E.1
-
71
-
-
23944483135
-
Post-transcriptional control of gene expression: A genome-wide perspective
-
Mata, J., Marguerat, S. and Bahler, J. (2005) Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem. Sci., 30, 506-514.
-
(2005)
Trends Biochem. Sci.
, vol.30
, pp. 506-514
-
-
Mata, J.1
Marguerat, S.2
Bahler, J.3
-
72
-
-
15244343863
-
MRNA decay in prokaryotes and eukaryotes: Different approaches to a similar problem
-
Kushner, S. R. (2004) mRNA decay in prokaryotes and eukaryotes: different approaches to a similar problem. IUBMB Life, 56, 585-594.
-
(2004)
IUBMB Life
, vol.56
, pp. 585-594
-
-
Kushner, S.R.1
-
73
-
-
3042767198
-
Regulation of mRNA decay: Decapping goes solo
-
Jacobson, A. (2004) Regulation of mRNA decay: decapping goes solo. Mol. Cell, 15, 1-2.
-
(2004)
Mol. Cell
, vol.15
, pp. 1-2
-
-
Jacobson, A.1
-
74
-
-
77955376931
-
Splice-site mutations cause Rrp6-mediated nuclear retention of the unspliced RNAs and transcriptional down-regulation of the splicing-defective genes
-
Eberle, A. B., Hessle, V., Helbig, R., Dantoft, W., Gimber, N. and Visa, N. (2010) Splice-site mutations cause Rrp6-mediated nuclear retention of the unspliced RNAs and transcriptional down-regulation of the splicing-defective genes. PLoS One, 5, e11540.
-
(2010)
PLoS One
, vol.5
-
-
Eberle, A.B.1
Hessle, V.2
Helbig, R.3
Dantoft, W.4
Gimber, N.5
Visa, N.6
-
75
-
-
77950509943
-
TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6
-
Callahan, K. P. and Butler, J. S. (2010) TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6. J. Biol. Chem., 285, 3540-3547.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3540-3547
-
-
Callahan, K.P.1
Butler, J.S.2
-
76
-
-
35548957338
-
Deletion of the nuclear exosome component RRP6 leads to continued accumulation of the histone mRNA HTB1 in S-phase of the cell cycle in Saccharomyces cerevisiae
-
Canavan, R. and Bond, U. (2007) Deletion of the nuclear exosome component RRP6 leads to continued accumulation of the histone mRNA HTB1 in S-phase of the cell cycle in Saccharomyces cerevisiae. Nucleic Acids Res., 35, 6268-6279.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6268-6279
-
-
Canavan, R.1
Bond, U.2
-
77
-
-
21244437042
-
Multiple RNA surveillance pathways limit aberrant expression of iron uptake mRNAs and prevent iron toxicity in S. cerevisiae
-
Lee, A., Henras, A. K. and Chanfreau, G. (2005) Multiple RNA surveillance pathways limit aberrant expression of iron uptake mRNAs and prevent iron toxicity in S. cerevisiae. Mol. Cell, 19, 39-51.
-
(2005)
Mol. Cell
, vol.19
, pp. 39-51
-
-
Lee, A.1
Henras, A.K.2
Chanfreau, G.3
-
78
-
-
44149124228
-
Cracking the RNA polymerase II CTD code
-
Egloff, S. and Murphy, S. (2008) Cracking the RNA polymerase II CTD code. Trends Genet., 24, 280-288.
-
(2008)
Trends Genet.
, vol.24
, pp. 280-288
-
-
Egloff, S.1
Murphy, S.2
-
79
-
-
9644310314
-
The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II
-
Kim, M., Krogan, N. J., Vasiljeva, L., Rando, O. J., Nedea, E., Greenblatt, J. F. and Buratowski, S. (2004) The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature, 432, 517-522.
-
(2004)
Nature
, vol.432
, pp. 517-522
-
-
Kim, M.1
Krogan, N.J.2
Vasiljeva, L.3
Rando, O.J.4
Nedea, E.5
Greenblatt, J.F.6
Buratowski, S.7
-
80
-
-
58649121693
-
Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 30 end processing factor Pcf11
-
Johnson, S. A., Cubberley, G. and Bentley, D. L. (2009) Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 30 end processing factor Pcf11. Mol. Cell, 33, 215-226.
-
(2009)
Mol. Cell
, vol.33
, pp. 215-226
-
-
Johnson, S.A.1
Cubberley, G.2
Bentley, D.L.3
-
81
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
Neil, H., Malabat, C., D'Aubenton-Carafa, Y., Xu, Z., Steinmetz, L. M. and Jacquier, A. (2009) Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature, 457, 1038-1042.
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
D'Aubenton-Carafa, Y.3
Xu, Z.4
Steinmetz, L.M.5
Jacquier, A.6
-
82
-
-
79957983472
-
Subtelomeric repetitive elements determine TERRA regulation by Rap1/Rif and Rap1/Sir complexes in yeast
-
Iglesias, N., Redon, S., Pfeiffer, V., Dees, M., Lingner, J. and Luke, B. (2011) Subtelomeric repetitive elements determine TERRA regulation by Rap1/Rif and Rap1/Sir complexes in yeast. EMBO Rep., 12, 587-593.
-
(2011)
EMBO Rep.
, vol.12
, pp. 587-593
-
-
Iglesias, N.1
Redon, S.2
Pfeiffer, V.3
Dees, M.4
Lingner, J.5
Luke, B.6
-
83
-
-
76849114364
-
The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II
-
Jimeno-Gonzalez, S., Haaning, L. L., Malagon, F. and Jensen, T. H. (2010) The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II. Mol. Cell, 37, 580-587.
-
(2010)
Mol. Cell
, vol.37
, pp. 580-587
-
-
Jimeno-Gonzalez, S.1
Haaning, L.L.2
Malagon, F.3
Jensen, T.H.4
-
84
-
-
33645844251
-
The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: Implications for a unified allosteric-torpedo model
-
Luo, W., Johnson, A. W. and Bentley, D. L. (2006) The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model. Genes Dev., 20, 954-965.
-
(2006)
Genes Dev.
, vol.20
, pp. 954-965
-
-
Luo, W.1
Johnson, A.W.2
Bentley, D.L.3
-
85
-
-
0024977417
-
Elevated recombination rates in transcriptionally active DNA
-
Thomas, B. J. and Rothstein, R. (1989) Elevated recombination rates in transcriptionally active DNA. Cell, 56, 619-630.
-
(1989)
Cell
, vol.56
, pp. 619-630
-
-
Thomas, B.J.1
Rothstein, R.2
-
86
-
-
0032126735
-
Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1
-
Chanfreau, G., Rotondo, G., Legrain, P. and Jacquier, A. (1998) Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1. EMBO J., 17, 3726-3737.
-
(1998)
EMBO J.
, vol.17
, pp. 3726-3737
-
-
Chanfreau, G.1
Rotondo, G.2
Legrain, P.3
Jacquier, A.4
-
87
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H. et al. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science, 285, 901-906.
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
|