-
1
-
-
0042810698
-
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
-
Lettice LA, Heaney SJ, Purdie LA, Li L, de Beer P, Oostra BA, Goode D, Elgar G, Hill RE, de Graaff E. A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum Mol Genet 2003, 12:1725-35.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1725-1735
-
-
Lettice, L.A.1
Heaney, S.J.2
Purdie, L.A.3
Li, L.4
de Beer, P.5
Oostra, B.A.6
Goode, D.7
Elgar, G.8
Hill, R.E.9
de Graaff, E.10
-
2
-
-
55049108856
-
Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein
-
Jeong Y, Leskow FC, El-Jaick K, Roessler E, Muenke M, Yocum A, Dubourg C, Li X, Geng X, Oliver G, Epstein DJ. Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein. Nat Genet 2008, 40:1348-53.
-
(2008)
Nat Genet
, vol.40
, pp. 1348-1353
-
-
Jeong, Y.1
Leskow, F.C.2
El-Jaick, K.3
Roessler, E.4
Muenke, M.5
Yocum, A.6
Dubourg, C.7
Li, X.8
Geng, X.9
Oliver, G.10
Epstein, D.J.11
-
3
-
-
70249088327
-
Genomic views of distant-acting enhancers
-
Visel A, Rubin EM, Pennacchio LA. Genomic views of distant-acting enhancers. Nature 2009, 461:199-205.
-
(2009)
Nature
, vol.461
, pp. 199-205
-
-
Visel, A.1
Rubin, E.M.2
Pennacchio, L.A.3
-
4
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 2005, 15:1034-50.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
Weinstock, G.M.11
Wilson, R.K.12
Gibbs, R.A.13
Kent, W.J.14
Miller, W.15
Haussler, D.16
-
5
-
-
0028962333
-
Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes
-
Aparicio S, Morrison A, Gould A, Gilthorpe J, Chaudhuri C, Rigby P, Krumlauf R, Brenner S. Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes. Proc Natl Acad Sci USA 1995, 92:1684-8.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 1684-1688
-
-
Aparicio, S.1
Morrison, A.2
Gould, A.3
Gilthorpe, J.4
Chaudhuri, C.5
Rigby, P.6
Krumlauf, R.7
Brenner, S.8
-
6
-
-
20044366725
-
Highly conserved non-coding sequences are associated with vertebrate development
-
Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJ, Cooke JE, Elgar G. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol 2005, 3:e7.
-
(2005)
PLoS Biol
, vol.3
-
-
Woolfe, A.1
Goodson, M.2
Goode, D.K.3
Snell, P.4
McEwen, G.K.5
Vavouri, T.6
Smith, S.F.7
North, P.8
Callaway, H.9
Kelly, K.10
Walter, K.11
Abnizova, I.12
Gilks, W.13
Edwards, Y.J.14
Cooke, J.E.15
Elgar, G.16
-
7
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM. In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006, 444:499-502.
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
Plajzer-Frick, I.11
Akiyama, J.12
De Val, S.13
Afzal, V.14
Black, B.L.15
Couronne, O.16
Eisen, M.B.17
Visel, A.18
Rubin, E.M.19
-
8
-
-
33847189172
-
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo
-
Zeitlinger J, Zinzen RP, Stark A, Kellis M, Zhang H, Young RA, Levine M. Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. Genes Dev 2007, 21:385-90.
-
(2007)
Genes Dev
, vol.21
, pp. 385-390
-
-
Zeitlinger, J.1
Zinzen, R.P.2
Stark, A.3
Kellis, M.4
Zhang, H.5
Young, R.A.6
Levine, M.7
-
9
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007, 316:1497-502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
10
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Ren B, Rubin EM, Pennacchio LA. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 2009, 457:854-8.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
Afzal, V.11
Ren, B.12
Rubin, E.M.13
Pennacchio, L.A.14
-
11
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D. Ultraconserved elements in the human genome. Science 2004, 304:1321-5.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.J.5
Mattick, J.S.6
Haussler, D.7
-
12
-
-
22144473057
-
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes
-
Sandelin A, Bailey P, Bruce S, Engström PG, Klos JM, Wasserman WW, Ericson J, Lenhard B. Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. BMC Genomics 2004, 5:99.
-
(2004)
BMC Genomics
, vol.5
, pp. 99
-
-
Sandelin, A.1
Bailey, P.2
Bruce, S.3
Engström, P.G.4
Klos, J.M.5
Wasserman, W.W.6
Ericson, J.7
Lenhard, B.8
-
13
-
-
33845906629
-
Ancient noncoding elements conserved in the human genome
-
Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S. Ancient noncoding elements conserved in the human genome. Science 2006, 314:1892.
-
(2006)
Science
, vol.314
, pp. 1892
-
-
Venkatesh, B.1
Kirkness, E.F.2
Loh, Y.H.3
Halpern, A.L.4
Lee, A.P.5
Johnson, J.6
Dandona, N.7
Viswanathan, L.D.8
Tay, A.9
Venter, J.C.10
Strausberg, R.L.11
Brenner, S.12
-
14
-
-
23744502709
-
A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts
-
de la Calle-Mustienes E, Feijóo CG, Manzanares M, Tena JJ, Rodríguez-Seguel E, Letizia A, Allende ML, Gómez-Skarmeta JL. A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts. Genome Res 2005, 15:1061-72.
-
(2005)
Genome Res
, vol.15
, pp. 1061-1072
-
-
de la Calle-Mustienes, E.1
Feijóo, C.G.2
Manzanares, M.3
Tena, J.J.4
Rodríguez-Seguel, E.5
Letizia, A.6
Allende, M.L.7
Gómez-Skarmeta, J.L.8
-
15
-
-
76249098866
-
Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3
-
Ragvin A, Moro E, Fredman D, Navratilova P, Drivenes T, Engström PG, Alonso ME, de la Calle Mustienes E, Gómez Skarmeta JL, Tavares MJ, Casares F, Manzanares M, van Heyningen V, Molven A, Njølstad PR, Argenton F, Lenhard B, Becker TS. Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3. Proc Natl Acad Sci USA 2010, 107:775-80.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 775-780
-
-
Ragvin, A.1
Moro, E.2
Fredman, D.3
Navratilova, P.4
Drivenes, T.5
Engström, P.G.6
Alonso, M.E.7
de la Calle Mustienes, E.8
Gómez Skarmeta, J.L.9
Tavares, M.J.10
Casares, F.11
Manzanares, M.12
van Heyningen, V.13
Molven, A.14
Njølstad, P.R.15
Argenton, F.16
Lenhard, B.17
Becker, T.S.18
-
16
-
-
46449117597
-
The amphioxus genome illustrates vertebrate origins and cephalochordate biology
-
Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, et al. The amphioxus genome illustrates vertebrate origins and cephalochordate biology. Genome Res 2008, 18:1100-1111.
-
(2008)
Genome Res
, vol.18
, pp. 1100-1111
-
-
Holland, L.Z.1
Albalat, R.2
Azumi, K.3
Benito-Gutiérrez, E.4
Blow, M.J.5
Bronner-Fraser, M.6
Brunet, F.7
Butts, T.8
Candiani, S.9
Dishaw, L.J.10
Ferrier, D.E.11
Garcia-Fernàndez, J.12
Gibson-Brown, J.J.13
Gissi, C.14
Godzik, A.15
Hallböök, F.16
Hirose, D.17
Hosomichi, K.18
Ikuta, T.19
Inoko, H.20
Kasahara, M.21
Kasamatsu, J.22
Kawashima, T.23
Kimura, A.24
Kobayashi, M.25
Kozmik, Z.26
Kubokawa, K.27
Laudet, V.28
Litman, G.W.29
McHardy, A.C.30
more..
-
17
-
-
0029055810
-
Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx
-
Pöpperl H, Bienz M, Studer M, Chan SK, Aparicio S, Brenner S, Mann RS, Krumlauf R. Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx. Cell 1995, 81:1031-1042.
-
(1995)
Cell
, vol.81
, pp. 1031-1042
-
-
Pöpperl, H.1
Bienz, M.2
Studer, M.3
Chan, S.K.4
Aparicio, S.5
Brenner, S.6
Mann, R.S.7
Krumlauf, R.8
-
18
-
-
0033968939
-
Segmental expression of Hoxb2 in r4 requires two separate sites that integrate cooperative interactions between Prep1, Pbx and Hox proteins
-
Ferretti E, Marshall H, Pöpperl H, Maconochie M, Krumlauf R, Blasi F. Segmental expression of Hoxb2 in r4 requires two separate sites that integrate cooperative interactions between Prep1, Pbx and Hox proteins. Development 2000, 127:155-66.
-
(2000)
Development
, vol.127
, pp. 155-166
-
-
Ferretti, E.1
Marshall, H.2
Pöpperl, H.3
Maconochie, M.4
Krumlauf, R.5
Blasi, F.6
-
19
-
-
33845899706
-
Evolutionary constraint on Otx2 neuroectoderm enhancers - deep conservation from skate to mouse and unique divergence in teleost
-
Kurokawa D, Sakurai Y, Inoue A, Nakayama R, Takasaki N, Suda Y, Miyake T, Amemiya CT, Aizawa S. Evolutionary constraint on Otx2 neuroectoderm enhancers - deep conservation from skate to mouse and unique divergence in teleost. Proc Nat Acad Sci USA 2006, 103:19350-5.
-
(2006)
Proc Nat Acad Sci USA
, vol.103
, pp. 19350-19355
-
-
Kurokawa, D.1
Sakurai, Y.2
Inoue, A.3
Nakayama, R.4
Takasaki, N.5
Suda, Y.6
Miyake, T.7
Amemiya, C.T.8
Aizawa, S.9
-
20
-
-
33748594960
-
A global genomic transcriptional code associated with CNS-expressed genes
-
Bailey PJ, Klos JM, Andersson E, Karlén M, Källström M, Ponjavic J, Muhr J, Lenhard B, Sandelin A, Ericson J. A global genomic transcriptional code associated with CNS-expressed genes. Exp Cell Res 2006, 312:3108-19.
-
(2006)
Exp Cell Res
, vol.312
, pp. 3108-3119
-
-
Bailey, P.J.1
Klos, J.M.2
Andersson, E.3
Karlén, M.4
Källström, M.5
Ponjavic, J.6
Muhr, J.7
Lenhard, B.8
Sandelin, A.9
Ericson, J.10
-
21
-
-
72649101692
-
A systematic approach to identify functional motifs within vertebrate developmental enhancers
-
Li Q, Ritter D, Yang N, Dong Z, Li H, Chuang JH, Guo S. A systematic approach to identify functional motifs within vertebrate developmental enhancers. Dev Biol 2010, 337:484-495.
-
(2010)
Dev Biol
, vol.337
, pp. 484-495
-
-
Li, Q.1
Ritter, D.2
Yang, N.3
Dong, Z.4
Li, H.5
Chuang, J.H.6
Guo, S.7
-
22
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
-
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 2005, 434:338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
23
-
-
34249848791
-
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
-
Xie X, Mikkelsen TS, Gnirke A, Lindblad-Toh K, Kellis M, Lander ES. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proc Natl Acad Sci USA 2007, 104:7145-7150.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7145-7150
-
-
Xie, X.1
Mikkelsen, T.S.2
Gnirke, A.3
Lindblad-Toh, K.4
Kellis, M.5
Lander, E.S.6
-
24
-
-
37849052436
-
Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
-
Minovitsky S, Stegmaier P, Kel A, Kondrashov AS, Dubchak I. Short sequence motifs, overrepresented in mammalian conserved non-coding sequences. BMC Genomics 2007, 8:378.
-
(2007)
BMC Genomics
, vol.8
, pp. 378
-
-
Minovitsky, S.1
Stegmaier, P.2
Kel, A.3
Kondrashov, A.S.4
Dubchak, I.5
-
25
-
-
77649259719
-
Genome-wide discovery of human heart enhancers
-
Narlikar L, Sakabe NJ, Blanski AA, Arimura FE, Westlund JM, Nobrega MA, Ovcharenko I. Genome-wide discovery of human heart enhancers. Genome Res 2010, 20:381-92.
-
(2010)
Genome Res
, vol.20
, pp. 381-392
-
-
Narlikar, L.1
Sakabe, N.J.2
Blanski, A.A.3
Arimura, F.E.4
Westlund, J.M.5
Nobrega, M.A.6
Ovcharenko, I.7
-
26
-
-
77950339177
-
Conservation and regulatory associations of a wide affinity range of mouse transcription factor binding sites
-
Jaeger SA, Chan ET, Berger MF, Stottmann R, Hughes TR, Bulyk ML. Conservation and regulatory associations of a wide affinity range of mouse transcription factor binding sites. Genomics 2010, 95:185-95.
-
(2010)
Genomics
, vol.95
, pp. 185-195
-
-
Jaeger, S.A.1
Chan, E.T.2
Berger, M.F.3
Stottmann, R.4
Hughes, T.R.5
Bulyk, M.L.6
-
27
-
-
26444482460
-
Molecular phylogeny and divergence times of deuterostome animals
-
Blair JE, Hedges SB. Molecular phylogeny and divergence times of deuterostome animals. Mol Biol Evol 2005, 22:2275-84.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2275-2284
-
-
Blair, J.E.1
Hedges, S.B.2
-
28
-
-
74249085481
-
Early evolution of conserved regulatory sequences associated with development in vertebrates
-
McEwen GK, Goode DK, Parker HJ, Woolfe A, Callaway H, Elgar G. Early evolution of conserved regulatory sequences associated with development in vertebrates. PLoS Genet 2009, 5:e10000762.
-
(2009)
PLoS Genet
, vol.5
-
-
McEwen, G.K.1
Goode, D.K.2
Parker, H.J.3
Woolfe, A.4
Callaway, H.5
Elgar, G.6
-
29
-
-
34347244234
-
Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish
-
Fisher S, Grice EA, Vinton RM, Bessling SL, Urasaki A, Kawakami K, McCallion AS. Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish. Nat Protoc 2006, 1:1297-305.
-
(2006)
Nat Protoc
, vol.1
, pp. 1297-1305
-
-
Fisher, S.1
Grice, E.A.2
Vinton, R.M.3
Bessling, S.L.4
Urasaki, A.5
Kawakami, K.6
McCallion, A.S.7
-
30
-
-
0035064436
-
Cloning and developmental expression of a zebrafish meis2 homeobox gene
-
Zerucha T, Prince VE. Cloning and developmental expression of a zebrafish meis2 homeobox gene. Mech Dev 2001, 102:247-50.
-
(2001)
Mech Dev
, vol.102
, pp. 247-250
-
-
Zerucha, T.1
Prince, V.E.2
-
31
-
-
0035202086
-
Cloning and expression of the TALE superclass homeobox Meis2 gene during zebrafish embryonic development
-
Biemar F, Devos N, Martial JA, Driever W, Peers B. Cloning and expression of the TALE superclass homeobox Meis2 gene during zebrafish embryonic development. Mech Dev 2001, 109:427-31.
-
(2001)
Mech Dev
, vol.109
, pp. 427-431
-
-
Biemar, F.1
Devos, N.2
Martial, J.A.3
Driever, W.4
Peers, B.5
-
32
-
-
0035176828
-
Zebrafish Meis functions to stabilize Pbx proteins and regulate hindbrain patterning
-
Waskiewicz AJ, Rikhof HA, Hernandez RE, Moens CB. Zebrafish Meis functions to stabilize Pbx proteins and regulate hindbrain patterning. Development 2001, 128:4139-51.
-
(2001)
Development
, vol.128
, pp. 4139-4151
-
-
Waskiewicz, A.J.1
Rikhof, H.A.2
Hernandez, R.E.3
Moens, C.B.4
-
33
-
-
0036337071
-
Meis family proteins are required for hindbrain development in the zebrafish
-
Choe SK, Vlachakis N, Sagerström CG. Meis family proteins are required for hindbrain development in the zebrafish. Development 2002, 129:585-95.
-
(2002)
Development
, vol.129
, pp. 585-595
-
-
Choe, S.K.1
Vlachakis, N.2
Sagerström, C.G.3
-
34
-
-
69449096142
-
Optimised Gal4 genetics for permanent gene expression mapping in zebrafish
-
Distel M, Wullimann MF, Köster RW. Optimised Gal4 genetics for permanent gene expression mapping in zebrafish. Proc Natl Acad Sci USA 2009, 106:13365-70.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 13365-13370
-
-
Distel, M.1
Wullimann, M.F.2
Köster, R.W.3
-
35
-
-
0033036185
-
Trimeric association of Hox and TALE homeodomain proteins mediates Hoxb2 hindbrain enhancer activity
-
Jacobs Y, Schnabel CA, Cleary ML. Trimeric association of Hox and TALE homeodomain proteins mediates Hoxb2 hindbrain enhancer activity. Mol Cell Biol 1999, 19:5134-42.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 5134-5142
-
-
Jacobs, Y.1
Schnabel, C.A.2
Cleary, M.L.3
-
36
-
-
0030746837
-
Cross-regulation in the mouse HoxB complex: the expression of Hoxb2 in rhombomere 4 is regulated by Hoxb1
-
Maconochie MK, Nonchev S, Studer M, Chan SK, Pöpperl H, Sham MH, Mann RS, Krumlauf R. Cross-regulation in the mouse HoxB complex: the expression of Hoxb2 in rhombomere 4 is regulated by Hoxb1. Genes Dev 1997, 11(14):1885-95.
-
(1997)
Genes Dev
, vol.11
, Issue.14
, pp. 1885-1895
-
-
Maconochie, M.K.1
Nonchev, S.2
Studer, M.3
Chan, S.K.4
Pöpperl, H.5
Sham, M.H.6
Mann, R.S.7
Krumlauf, R.8
-
37
-
-
67749095703
-
Hox specificity: unique roles for cofactors and collaborators
-
Mann RS, Lelli KM, Joshi R. Hox specificity: unique roles for cofactors and collaborators. Curr Top Dev Biol 2009, 88:63-101.
-
(2009)
Curr Top Dev Biol
, vol.88
, pp. 63-101
-
-
Mann, R.S.1
Lelli, K.M.2
Joshi, R.3
-
38
-
-
0029939199
-
Pbx modulation of Hox homeodomain amino-terminal arms establishes different DNA-binding specificities across the Hox locus
-
Chang CP, Brocchieri L, Shen WF, Largman C, Cleary ML. Pbx modulation of Hox homeodomain amino-terminal arms establishes different DNA-binding specificities across the Hox locus. Mol Cell Biol 1996, 16:1734-45.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 1734-1745
-
-
Chang, C.P.1
Brocchieri, L.2
Shen, W.F.3
Largman, C.4
Cleary, M.L.5
-
39
-
-
0030813558
-
Meis proteins are major in vivo DNA binding partners for wild-type but not chimeric Pbx proteins
-
Chang CP, Jacobs Y, Nakamura T, Jenkins NA, Copeland NG. Meis proteins are major in vivo DNA binding partners for wild-type but not chimeric Pbx proteins. Mol Cell Biol 1997, 17:5679-87.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 5679-5687
-
-
Chang, C.P.1
Jacobs, Y.2
Nakamura, T.3
Jenkins, N.A.4
Copeland, N.G.5
-
40
-
-
0029890916
-
A structural model for a homeotic protein-extradenticle-DNA complex accounts for the choice of HOX protein in the heterodimer
-
Chan SK, Mann RS. A structural model for a homeotic protein-extradenticle-DNA complex accounts for the choice of HOX protein in the heterodimer. Proc Natl Acad Sci USA 1996, 93:5223-8.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 5223-5228
-
-
Chan, S.K.1
Mann, R.S.2
-
41
-
-
35548931586
-
Functional specificity of a Hox protein mediated by the recognition of minor groove structure
-
Joshi R, Passner JM, Rohs R, Jain R, Sosinsky A, Crickmore MA, Jacob V, Aggarwal AK, Honig B, Mann RS. Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell 2007, 131:530-43.
-
(2007)
Cell
, vol.131
, pp. 530-543
-
-
Joshi, R.1
Passner, J.M.2
Rohs, R.3
Jain, R.4
Sosinsky, A.5
Crickmore, M.A.6
Jacob, V.7
Aggarwal, A.K.8
Honig, B.9
Mann, R.S.10
-
42
-
-
74949138014
-
Exhaustive search for over-represented DNA sequence motifs with CisFinder
-
Sharov AA, Ko MSH. Exhaustive search for over-represented DNA sequence motifs with CisFinder. DNA Res 2009, 16:261-73.
-
(2009)
DNA Res
, vol.16
, pp. 261-273
-
-
Sharov, A.A.1
Ko, M.S.H.2
-
43
-
-
35248843126
-
CONDOR: a database resource of developmentally associated conserved non-coding elements
-
Woolfe A, Goode DK, Cooke J, Callaway H, Smith S, Snell P, McEwen GK, Elgar G. CONDOR: a database resource of developmentally associated conserved non-coding elements. BMC Dev Biol 2007, 7:100.
-
(2007)
BMC Dev Biol
, vol.7
, pp. 100
-
-
Woolfe, A.1
Goode, D.K.2
Cooke, J.3
Callaway, H.4
Smith, S.5
Snell, P.6
McEwen, G.K.7
Elgar, G.8
-
45
-
-
85143470848
-
The Regulatory Genome: Gene Regulatory Networks in Development and Evolution
-
Academic Press, San Diego
-
Davidson EH. The Regulatory Genome: Gene Regulatory Networks in Development and Evolution. 2006, Academic Press, San Diego.
-
(2006)
-
-
Davidson, E.H.1
-
46
-
-
1842509244
-
Nlz gene family is required for hindbrain patterning in the zebrafish
-
Hoyle J, Tang YP, Wiellette EL, Wardle FC, Sive H. nlz gene family is required for hindbrain patterning in the zebrafish. Dev Dyn 2004, 229:835-46.
-
(2004)
Dev Dyn
, vol.229
, pp. 835-846
-
-
Hoyle, J.1
Tang, Y.P.2
Wiellette, E.L.3
Wardle, F.C.4
Sive, H.5
-
47
-
-
0141503520
-
Nlz belongs to a family of zinc-finger-containing repressors and controls segmental gene expression in the zebrafish hindbrain
-
Runko AP, Sagerström CG. Nlz belongs to a family of zinc-finger-containing repressors and controls segmental gene expression in the zebrafish hindbrain. Dev Biol 2003, 262:254-67.
-
(2003)
Dev Biol
, vol.262
, pp. 254-267
-
-
Runko, A.P.1
Sagerström, C.G.2
-
48
-
-
0033769812
-
COUP-TF orphan nuclear receptors in development and differention
-
Pereira FA, Tsai MJ, Tsai SY. COUP-TF orphan nuclear receptors in development and differention. Cell Mol Life Sci 2000, 57:1388-98.
-
(2000)
Cell Mol Life Sci
, vol.57
, pp. 1388-1398
-
-
Pereira, F.A.1
Tsai, M.J.2
Tsai, S.Y.3
-
49
-
-
77149154313
-
Phylogeny of the Teashirt-related Zinc Finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish
-
Santos JS, Fonseca NA, Vieira CP, Vieira J, Casares F. Phylogeny of the Teashirt-related Zinc Finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish. Dev Dyn 2010, 239:1010-18.
-
(2010)
Dev Dyn
, vol.239
, pp. 1010-1018
-
-
Santos, J.S.1
Fonseca, N.A.2
Vieira, C.P.3
Vieira, J.4
Casares, F.5
-
50
-
-
33748784347
-
Xenopus Teashirt1 regulates posterior identity in brain and cranial neural crest
-
Koebernick K, Kashef J, Pieler T, Wedlich D. Xenopus Teashirt1 regulates posterior identity in brain and cranial neural crest. Dev Biol 2006, 298:312-26.
-
(2006)
Dev Biol
, vol.298
, pp. 312-326
-
-
Koebernick, K.1
Kashef, J.2
Pieler, T.3
Wedlich, D.4
-
51
-
-
34547801334
-
Tshz1 is required for axial skeleton, soft palate and middle ear development in mice
-
Coré N, Caubit X, Metchat A, Boned A, Djabali M, Fasano L. Tshz1 is required for axial skeleton, soft palate and middle ear development in mice. Dev Biol 2007, 308:407-420.
-
(2007)
Dev Biol
, vol.308
, pp. 407-420
-
-
Coré, N.1
Caubit, X.2
Metchat, A.3
Boned, A.4
Djabali, M.5
Fasano, L.6
-
52
-
-
34548416221
-
Zebrafish Hoxb1a regulates multiple downstream genes including prickle1b
-
Rohrschneider MR, Elsen GE, Prince VE. Zebrafish Hoxb1a regulates multiple downstream genes including prickle1b. Dev Biol 2007, 309:358-72.
-
(2007)
Dev Biol
, vol.309
, pp. 358-372
-
-
Rohrschneider, M.R.1
Elsen, G.E.2
Prince, V.E.3
-
53
-
-
33746558190
-
Reversal of Hox1 gene subfunctionalisation in the mouse
-
Tvrdik P, Capecchi MR. Reversal of Hox1 gene subfunctionalisation in the mouse. Dev Cell 2006, 11:239-50.
-
(2006)
Dev Cell
, vol.11
, pp. 239-250
-
-
Tvrdik, P.1
Capecchi, M.R.2
-
54
-
-
25444434349
-
Hoxb1 enhancer and control of rhombomere 4 expression: complex interplay between PREP1-PBX1-HOXB1 binding sites
-
Ferretti E, Cambronero F, Tümpel S, Longobardi E, Wiedemann LM, Blasi F, Krumlauf R. Hoxb1 enhancer and control of rhombomere 4 expression: complex interplay between PREP1-PBX1-HOXB1 binding sites. Mol Cell Biol 2005, 25:8541-52.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 8541-8552
-
-
Ferretti, E.1
Cambronero, F.2
Tümpel, S.3
Longobardi, E.4
Wiedemann, L.M.5
Blasi, F.6
Krumlauf, R.7
-
56
-
-
0037083388
-
Conserved regulation of the Caenorhabditis elegans labial/Hox1 gene ceh-13
-
Streit A, Kohler R, Marty T, Belfiore M, Takacs-Vellai K. Conserved regulation of the Caenorhabditis elegans labial/Hox1 gene ceh-13. Dev Biol 2002, 242:96-108.
-
(2002)
Dev Biol
, vol.242
, pp. 96-108
-
-
Streit, A.1
Kohler, R.2
Marty, T.3
Belfiore, M.4
Takacs-Vellai, K.5
-
57
-
-
0033404512
-
Regulation of Hox target genes by a DNA bound Homothorax/Hox/Extradenticle complex
-
Ryoo HD, Marty T, Casares F, Affolter M, Mann RS. Regulation of Hox target genes by a DNA bound Homothorax/Hox/Extradenticle complex. Development 1999, 126:5137-48.
-
(1999)
Development
, vol.126
, pp. 5137-5148
-
-
Ryoo, H.D.1
Marty, T.2
Casares, F.3
Affolter, M.4
Mann, R.S.5
-
58
-
-
33750433896
-
Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition
-
Urasaki A, Morvan G, Kawakami K. Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition. Genetics 2006, 174:639-49.
-
(2006)
Genetics
, vol.174
, pp. 639-649
-
-
Urasaki, A.1
Morvan, G.2
Kawakami, K.3
-
59
-
-
4344636300
-
A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish
-
Kawakami K, Takeda H, Kawakami N, Kobayashi M, Matsuda N, Mishina M. A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish. Developmental Cell 2004, 7:133-44.
-
(2004)
Developmental Cell
, vol.7
, pp. 133-144
-
-
Kawakami, K.1
Takeda, H.2
Kawakami, N.3
Kobayashi, M.4
Matsuda, N.5
Mishina, M.6
-
60
-
-
59449089844
-
Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend
-
McGaughey DM, Stine ZE, Huynh JL, Vinton RM, McCallion AS. Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend. BMC Genomics 2009, 10:8.
-
(2009)
BMC Genomics
, vol.10
, pp. 8
-
-
McGaughey, D.M.1
Stine, Z.E.2
Huynh, J.L.3
Vinton, R.M.4
McCallion, A.S.5
-
61
-
-
1842857558
-
Megaprimer PCR
-
Barik S. Megaprimer PCR. Methods Mol Biol 2002, 192:189-96.
-
(2002)
Methods Mol Biol
, vol.192
, pp. 189-196
-
-
Barik, S.1
-
62
-
-
34248641108
-
High-throughput transgenesis in Xenopus using I-SceI meganuclease
-
Ogino H, McConnell WB, Grainger RM. High-throughput transgenesis in Xenopus using I-SceI meganuclease. Nat Protoc 2006, 1:1703-10.
-
(2006)
Nat Protoc
, vol.1
, pp. 1703-1710
-
-
Ogino, H.1
McConnell, W.B.2
Grainger, R.M.3
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