Phylogeny of the teashirt-related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish

Developmental Dynamics

Volumn 239, Issue 3, 2010, Pages 1010-1018

  Santos, Joana S ^a,b,c   Fonseca, Nuno A ^c   Vieira, Cristina P ^b   Vieira, Jorge ^b   Casares, Fernando ^a,b,d  

^a Universidad Pablo de Olavide   (Spain)

^b UNIVERSITY OF PORTO   (Portugal)

^c UNIVERSITY OF PORTO   (Portugal)

^d UNIVERSITY OF SEVILLE   (Spain)

Author keywords

Expression; Meis; Pax6; Phylogeny; Tshz gene family; Zebrafish

Indexed keywords

GENE PRODUCT; TRANSCRIPTION FACTOR PAX6; TRANSCRIPTION FACTOR PAX6 A; TRANSCRIPTION FACTOR PAX6 B; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BRAIN; DROSOPHILA TEASHIRT 2 GENE; DROSOPHILA TEASHIRT 3 GENE; DROSOPHILA TEASHIRT GENE; EVOLUTION; GENE; GENE EXPRESSION; MULTIGENE FAMILY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN EXPRESSION; RETINA; RHOMBENCEPHALON; ZEBRA FISH;

ANIMALS; BRAIN; EVOLUTION, MOLECULAR; EYE PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HOMEODOMAIN PROTEINS; NEURONS; PAIRED BOX TRANSCRIPTION FACTORS; PHYLOGENY; REPRESSOR PROTEINS; RETINA; SPINAL CORD; TIME FACTORS; TRANSCRIPTION FACTORS; ZEBRAFISH; ZEBRAFISH PROTEINS; ZINC FINGERS;

DANIO RERIO;

EID: 77149154313     PISSN: 10588388     EISSN: 10970177     Source Type: Journal    
DOI: 10.1002/dvdy.22228     Document Type: Article

References (43)

1. Abu-Shaar M, Mann RS. 1998. Generation of multiple antagonistic domains along the proximodistal axis during Drosophila leg development. Development 125:3821-3830.
2. Azpiazu N, Morata G. 2000. Function and regulation of homothorax in the wing imaginal disc of Drosophila. Development 127:2685-2693.
3. Bessa J, Casares F. 2005. Restricted teashirt expression confers eye-specific responsiveness to Dpp and Wg signals during eye specification in Drosophila. Development 132:5011-5020.
4. Bessa J, Gebelein B, Pichaud F, Casares F, Mann RS. 2002. Combinatorial control of Drosophila eye development by eyeless, homothorax, and teashirt. Genes Dev 16:2415-2427.
5. Bessa J, Carmona L, Casares F. 2009. Zinc-finger paralogues tsh and tio are functionally equivalent during imaginal development in Drosophila and maintain their expression levels through auto- and cross-negative feedback loops. Dev Dyn 238:19-28.
6. Casares F, Mann RS. 2000. A dual role for homothorax in inhibiting wing blade development and specifying proximal wing identities in Drosophila. Development 127:1499-1508.
7. Caubit X, Core N, Boned A, Kerridge S, Djabali M, Fasano L. 2000. Vertebrate orthologues of the Drosophila region-specific patterning gene teashirt. Mech Dev 91:445-448.
8. Caubit X, Lye CM, Martin E, Core N, Long DA, Vola C, Jenkins D, Garratt AN, Skaer H, Woolf AS, Fasano L. 2008. Teashirt 3 is necessary for ureteral smooth muscle differentiation downstream of SHH and BMP4. Development 135:3301-3310.
9. Choe SK, Vlachakis N, Sagerstrom CG. 2002. Meis family proteins are required for hindbrain development in the zebrafish. Development 129:585-595.
10. Datta RR, Lurye JM, Kumar JP. 2009. Restriction of ectopic eye formation by Drosophila teashirt and tiptop to the developing antenna. Dev Dyn 38: 2202-2210.
11. Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
12. Erkner A, Gallet A, Angelats C, Fasano L, Kerridge S. 1999. The role of Teashirt in proximal leg development in Drosophila: ectopic Teashirt expression reveals different cell behaviours in ventral and dorsal domains. Dev Biol 215: 221-232.
13. Essoussi N, Boujenfa K, Limam M. 2008. A comparison of MSA tools. Bioinformation 2:452-455.
14. Fasano L, Roder L, Core N, Alexandre E, Vola C, Jacq B, Kerridge S. 1991. The gene teashirt is required for the development of Drosophila embryonic trunk segments and encodes a protein with widely spaced zinc finger motifs. Cell 64:63-79.
15. Fonseca NA, Vieira CP, Vieira J. 2009. Gene classification based on amino acid motifs and residues: the DLX (distalless) test case. PLoS One 4:e5748.
16. Furlong RF, Holland PW. 2002. Were vertebrates octoploid? Philos Trans R Soc Lond B Biol Sci 357:531-544.
17. Golubchik T, Wise MJ, Easteal S, Jermiin LS. 2007. Mind the gaps: evidence of bias in estimates of multiple sequence alignments. Mol Biol Evol 24:2433-2442.
18. Kleinjan DA, Bancewicz RM, Gautier P, Dahm R, Schonthaler HB, Damante G, Seawright A, Hever AM, Yeyati PL, van Heyningen V, Coutinho P. 2008. Sub-functionalization of duplicated zebrafish pax6 genes by cis-regulatory divergence. PLoS Genet 4:e29.
19. Koebernick K, Kashef J, Pieler T, Wedlich D. 2006. Xenopus Teashirt1 regulates posterior identity in brain and cranial neural crest. Dev Biol 298:312-326.
20. Larhammar D, Lundin LG, Hallbook F. 2002. The human Hox-bearing chromosome regions did arise by block or chromosome (or even genome) duplications. Genome Res 12:1910-1920.
21. Laugier E, Yang Z, Fasano L, Kerridge S, Vola C. 2005. A critical role of teashirt for patterning the ventral epidermis is masked by ectopic expression of tiptop, a paralog of teashirt in Drosophila. Dev Biol 283:446-458.
22. Long Q, Park BK, Ekker M. 2001. Expression and regulation of mouse Mtsh1 during limb and branchial arch development. Dev Dyn 222:308-312.
23. Manfroid I, Caubit X, Kerridge S, Fasano L. 2004. Three putative murine Teashirt orthologues specify trunk structures in Drosophila in the same way as the Drosophila teashirt gene. Development 131:1065-1073.
24. Manfroid I, Caubit X, Marcelle C, Fasano L. 2006. Teashirt 3 expression in the chick embryo reveals a remarkable association with tendon development. Gene Expr Patterns 6:908-912.
25. Mathies LD, Kerridge S, Scott MP. 1994. Role of the teashirt gene in Drosophila midgut morphogenesis: secreted proteins mediate the action of homeotic genes. Development 120:2799-2809.
26. Notredame C, Higgins DG, Heringa J. 2000. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 302:205-217.
27. Onai T, Matsuo-Takasaki M, Inomata H, Aramaki T, Matsumura M, Yakura R, Sasai N, Sasai Y. 2007. XTsh3 is an essential enhancing factor of canonical Wnt signaling in Xenopus axial determination. EMBO J 26:2350-2360.
28. Pan D, Rubin GM. 1998. Targeted expression of teashirt induces ectopic eyes in Drosophila. Proc Natl Acad Sci U S A 95:15508-15512.
29. Peng HW, Slattery M, Mann RS. 2009. Transcription factor choice in the Hippo signaling pathway: homothorax and yorkie regulation of the microRNA bantam in the progenitor domain of the Drosophila eye imaginal disc. Genes Dev 23:2307-2319.
30. Puschel AW, Gruss P, Westerfield M. 1992. Sequence and expression pattern of pax-6 are highly conserved between zebrafish and mice. Development 114: 643-651.
31. Roder L, Vola C, Kerridge S. 1992. The role of the teashirt gene in trunk segmental identity in Drosophila. Development 115:1017-1033.
32. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
33. Shippy TD, Tomoyasu Y, Nie W, Brown SJ, Denell RE. 2008. Do teashirt family genes specify trunk identity? Insights from the single tiptop/teashirt homolog of Tribolium castaneum. Dev Genes Evol 218:141-152.
34. Sidow A. 1996. Gen(om)e duplications in the evolution of early vertebrates. Curr Opin Genet Dev 6:715-722.
35. Singh A, Kango-Singh M, Choi KW, Sun YH. 2004. Dorso-ventral asymmetric functions of teashirt in Drosophila eye development depend on spatial cues provided by early DV patterning genes. Mech Dev 121:365-370.
36. Stedman A, Lecaudey V, Havis E, Anselme I, Wassef M, Gilardi-Hebenstreit P, Schneider-Maunoury S. 2009. A functional interaction between Irx and Meis patterns the anterior hindbrain and activates krox20 expression in rhombomere 3. Dev Biol 327:566-577.
37. Sundstrom G, Larsson TA, Larhammar D. 2008. Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters. BMC Evol Biol 8:254.
38. Tena JJ, Neto A, de la Calle-Mustienes E, Bras-Pereira C, Casares F, Gomez-Skarmeta JL. 2007. Odd-skipped genes encode repressors that control kidney development. Dev Biol 301:518-531.
39. Thompson JD, Gibson TJ, Higgins DG. 2002. Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics Chapter 2, Unit 2 3.
40. Wang H, Lee EM, Sperber SM, Lin S, Ekker M, Long Q. 2007. Isolation and expression of zebrafish zinc-finger transcription factor gene tsh1. Gene Expr Patterns 7:318-322.
41. Waskiewicz AJ, Rikhof HA, Hernandez RE, Moens CB. 2001. Zebrafish Meis functions to stabilize Pbx proteins and regulate hindbrain patterning. Development 128:4139-4151.
42. Wu J, Cohen SM. 2000. Proximal distal axis formation in the Drosophila leg: distinct functions of teashirt and homothorax in the proximal leg. Mech Dev 94:47-56.
43. Wu J, Cohen SM. 2002. Repression of Teashirt marks the initiation of wing development. Development 129:2411-2418.