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Volumn 60, Issue 4, 2011, Pages 335-340

Helicases involved in splicing from malaria parasite Plasmodium falciparum

Author keywords

DEAD box; Helicase; Malaria; Plasmodium falciparum; RNA; Splicing; Unwinding

Indexed keywords

AMINO ACID; HELICASE; MESSENGER RNA; PROTEIN; RNA; SMALL NUCLEAR RNA;

EID: 82155162411     PISSN: 13835769     EISSN: 18730329     Source Type: Journal    
DOI: 10.1016/j.parint.2011.09.007     Document Type: Review
Times cited : (6)

References (51)
  • 1
    • 2442676334 scopus 로고    scopus 로고
    • Prokaryotic and eukaryotic DNA helicases. Essential molecular motor proteins for cellular machinery
    • Tuteja N., Tuteja R. Prokaryotic and eukaryotic DNA helicases. Essential molecular motor proteins for cellular machinery. European Journal of Biochemistry 2004, 271:1835-1848.
    • (2004) European Journal of Biochemistry , vol.271 , pp. 1835-1848
    • Tuteja, N.1    Tuteja, R.2
  • 2
    • 2442706340 scopus 로고    scopus 로고
    • Unraveling DNA helicases. Motif, structure, mechanism and function
    • Tuteja N., Tuteja R. Unraveling DNA helicases. Motif, structure, mechanism and function. European Journal of Biochemistry 2004, 271:1849-1863.
    • (2004) European Journal of Biochemistry , vol.271 , pp. 1849-1863
    • Tuteja, N.1    Tuteja, R.2
  • 3
    • 70449625597 scopus 로고    scopus 로고
    • The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome
    • Fabrizio P., Dannenberg J., Dube P., Kastner B., Stark H., Urlaub H., et al. The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome. Molecular Cell 2009, 36:593-608.
    • (2009) Molecular Cell , vol.36 , pp. 593-608
    • Fabrizio, P.1    Dannenberg, J.2    Dube, P.3    Kastner, B.4    Stark, H.5    Urlaub, H.6
  • 4
    • 0029871680 scopus 로고    scopus 로고
    • Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations
    • Noble S.M., Guthrie C. Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations. Genetics 1996, 143:67-80.
    • (1996) Genetics , vol.143 , pp. 67-80
    • Noble, S.M.1    Guthrie, C.2
  • 6
    • 34548444241 scopus 로고    scopus 로고
    • Malaria-an overview
    • Tuteja R. Malaria-an overview. FEBS Journal 2007, 274:4670-4679.
    • (2007) FEBS Journal , vol.274 , pp. 4670-4679
    • Tuteja, R.1
  • 7
    • 34548409606 scopus 로고    scopus 로고
    • Drug-resistant malaria: an insight
    • Hyde J.E. Drug-resistant malaria: an insight. FEBS Journal 2007, 274:4688-4698.
    • (2007) FEBS Journal , vol.274 , pp. 4688-4698
    • Hyde, J.E.1
  • 9
    • 33745125942 scopus 로고    scopus 로고
    • Unraveling the 'DEAD-box' helicases of Plasmodium falciparum
    • Tuteja R., Pradhan A. Unraveling the 'DEAD-box' helicases of Plasmodium falciparum. Gene 2006, 376:1-12.
    • (2006) Gene , vol.376 , pp. 1-12
    • Tuteja, R.1    Pradhan, A.2
  • 10
    • 74549193046 scopus 로고    scopus 로고
    • Genome wide identification of Plasmodium falciparum helicases: a comparison with human host
    • Tuteja R. Genome wide identification of Plasmodium falciparum helicases: a comparison with human host. Cell Cycle 2010, 9:104-120.
    • (2010) Cell Cycle , vol.9 , pp. 104-120
    • Tuteja, R.1
  • 12
    • 0030475009 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae Prp5 protein has RNA-dependent ATPase activity with specificity for U2 small nuclear RNA
    • O'Day C.L., Dalbadie-McFarland G., Abelson J. The Saccharomyces cerevisiae Prp5 protein has RNA-dependent ATPase activity with specificity for U2 small nuclear RNA. Journal of Biological Chemistry 1996, 271:33261-33267.
    • (1996) Journal of Biological Chemistry , vol.271 , pp. 33261-33267
    • O'Day, C.L.1    Dalbadie-McFarland, G.2    Abelson, J.3
  • 13
    • 1542380571 scopus 로고    scopus 로고
    • Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA
    • Xu Y.-Z., Newnham C.M., Kameoka S., Huang T., Konarska M.M., Query C.C. Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. EMBO Journal 2004, 23:376-385.
    • (2004) EMBO Journal , vol.23 , pp. 376-385
    • Xu, Y.-Z.1    Newnham, C.M.2    Kameoka, S.3    Huang, T.4    Konarska, M.M.5    Query, C.C.6
  • 14
    • 0033918079 scopus 로고    scopus 로고
    • Divergence of noncoding sequences and of insertions encoding nonglobular domains at a genomic region well conserved in plasmodia
    • Pizzi E., Frontali C. Divergence of noncoding sequences and of insertions encoding nonglobular domains at a genomic region well conserved in plasmodia. Journal of Molecular Evolution 2000, 50:474-480.
    • (2000) Journal of Molecular Evolution , vol.50 , pp. 474-480
    • Pizzi, E.1    Frontali, C.2
  • 15
    • 0035104190 scopus 로고    scopus 로고
    • Low-complexity regions in Plasmodium falciparum proteins
    • Pizzi E., Frontali C. Low-complexity regions in Plasmodium falciparum proteins. Genome Research 2001, 11:218-229.
    • (2001) Genome Research , vol.11 , pp. 218-229
    • Pizzi, E.1    Frontali, C.2
  • 16
  • 17
    • 0035187881 scopus 로고    scopus 로고
    • Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56
    • Zhang M., Green M.R. Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56. Genes & Development 2001, 15:30-35.
    • (2001) Genes & Development , vol.15 , pp. 30-35
    • Zhang, M.1    Green, M.R.2
  • 18
    • 0035960716 scopus 로고    scopus 로고
    • MRNA export: travelling with DEAD box proteins
    • Linder P., Stutz F. mRNA export: travelling with DEAD box proteins. Current Biology 2001, 11:R961-R963.
    • (2001) Current Biology , vol.11
    • Linder, P.1    Stutz, F.2
  • 19
    • 77958111866 scopus 로고    scopus 로고
    • A genomic glance at the components of the mRNA export machinery in Plasmodium falciparum
    • Tuteja R., Mehta J. A genomic glance at the components of the mRNA export machinery in Plasmodium falciparum. Communicative & Integrative Biology 2010, 3:318-326.
    • (2010) Communicative & Integrative Biology , vol.3 , pp. 318-326
    • Tuteja, R.1    Mehta, J.2
  • 20
    • 1542361776 scopus 로고    scopus 로고
    • EIF4A3 is a novel component of the exon junction complex
    • Chan C.C., Dostie J., Diem M.D., Feng W., Mann M., Rappsilber J., et al. eIF4A3 is a novel component of the exon junction complex. RNA 2004, 10:200-209.
    • (2004) RNA , vol.10 , pp. 200-209
    • Chan, C.C.1    Dostie, J.2    Diem, M.D.3    Feng, W.4    Mann, M.5    Rappsilber, J.6
  • 21
    • 66849083719 scopus 로고    scopus 로고
    • UAP56- a key player with surprisingly diverse roles in pre-mRNA splicing and nuclear export
    • Shen H. UAP56- a key player with surprisingly diverse roles in pre-mRNA splicing and nuclear export. BMB Reports 2009, 42:185-188.
    • (2009) BMB Reports , vol.42 , pp. 185-188
    • Shen, H.1
  • 22
    • 52049125441 scopus 로고    scopus 로고
    • Isolation and characterization of Plasmodium falciparum UAP56 homologue: evidence for the coupling of RNA binding and splicing activity by site-directed mutations
    • Shankar J., Pradhan A., Tuteja R. Isolation and characterization of Plasmodium falciparum UAP56 homologue: evidence for the coupling of RNA binding and splicing activity by site-directed mutations. Archives of Biochemistry and Biophysics 2008, 478:143-153.
    • (2008) Archives of Biochemistry and Biophysics , vol.478 , pp. 143-153
    • Shankar, J.1    Pradhan, A.2    Tuteja, R.3
  • 23
    • 0028096619 scopus 로고
    • PRP28, a 'DEAD-box' protein, is required for the first step of mRNA splicing in vitro
    • Strauss E.J., Guthrie C. PRP28, a 'DEAD-box' protein, is required for the first step of mRNA splicing in vitro. Nucleic Acids Research 1994, 22:3187-3193.
    • (1994) Nucleic Acids Research , vol.22 , pp. 3187-3193
    • Strauss, E.J.1    Guthrie, C.2
  • 24
    • 0033010430 scopus 로고    scopus 로고
    • An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p
    • Staley J.P., Guthrie C. An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p. Molecular Cell 1999, 3:55-64.
    • (1999) Molecular Cell , vol.3 , pp. 55-64
    • Staley, J.P.1    Guthrie, C.2
  • 25
    • 0031574096 scopus 로고    scopus 로고
    • Genetic interactions of conserved regions in the DEAD-box protein Prp28p
    • Chang T.H., Latus L.J., Liu Z., Abbott J.M. Genetic interactions of conserved regions in the DEAD-box protein Prp28p. Nucleic Acids Research 1997, 25:5033-5040.
    • (1997) Nucleic Acids Research , vol.25 , pp. 5033-5040
    • Chang, T.H.1    Latus, L.J.2    Liu, Z.3    Abbott, J.M.4
  • 26
    • 0035105921 scopus 로고    scopus 로고
    • Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor
    • Chen J.Y.-F., Stands L., Staley J.P., Jackups R.R., Latus L.J., Chang T.-H. Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor. Molecular Cell 2001, 7:227-232.
    • (2001) Molecular Cell , vol.7 , pp. 227-232
    • Chen, J.Y.-F.1    Stands, L.2    Staley, J.P.3    Jackups, R.R.4    Latus, L.J.5    Chang, T.-H.6
  • 27
    • 51549094161 scopus 로고    scopus 로고
    • The Caenorhabditis elegans DDX-23, a homolog of yeast splicing factor PRP28, is required for the sperm-oocyte switch and differentiation of various cell types
    • Konishi T., Uodome N., Sugimoto A. The Caenorhabditis elegans DDX-23, a homolog of yeast splicing factor PRP28, is required for the sperm-oocyte switch and differentiation of various cell types. Developmental Dynamics 2008, 237:2367-2377.
    • (2008) Developmental Dynamics , vol.237 , pp. 2367-2377
    • Konishi, T.1    Uodome, N.2    Sugimoto, A.3
  • 28
    • 0029888811 scopus 로고    scopus 로고
    • An RNA-dependent ATPase associated with U2/U6 snRNAs in pre-mRNA splicing
    • Xu D., Nouraini S., Field D., Tang S.J., Friesen J.D. An RNA-dependent ATPase associated with U2/U6 snRNAs in pre-mRNA splicing. Nature 1996, 381:709-713.
    • (1996) Nature , vol.381 , pp. 709-713
    • Xu, D.1    Nouraini, S.2    Field, D.3    Tang, S.J.4    Friesen, J.D.5
  • 29
    • 0029854007 scopus 로고    scopus 로고
    • Identification and characterization of yeast mutants that overcome an experimentally introduced block to splicing at the 3' splice site
    • Lin J., Rossi J.J. Identification and characterization of yeast mutants that overcome an experimentally introduced block to splicing at the 3' splice site. RNA 1996, 2:835-848.
    • (1996) RNA , vol.2 , pp. 835-848
    • Lin, J.1    Rossi, J.J.2
  • 30
    • 0033056712 scopus 로고    scopus 로고
    • The first ATPase domain of the yeast 246-kDa protein is required for in vivo unwinding of the U4/U6 duplex
    • Kim D.H., Rossi J.J. The first ATPase domain of the yeast 246-kDa protein is required for in vivo unwinding of the U4/U6 duplex. RNA 1999, 5:959-971.
    • (1999) RNA , vol.5 , pp. 959-971
    • Kim, D.H.1    Rossi, J.J.2
  • 31
    • 0036158942 scopus 로고    scopus 로고
    • Composition and functional characterization of the yeast spliceosomal penta-snRNP
    • Stevens S.W., Ryan D.E., Ge H.Y., Moore R.E., Young M.K., Lee T.D., et al. Composition and functional characterization of the yeast spliceosomal penta-snRNP. Molecular Cell 2002, 9:31-44.
    • (2002) Molecular Cell , vol.9 , pp. 31-44
    • Stevens, S.W.1    Ryan, D.E.2    Ge, H.Y.3    Moore, R.E.4    Young, M.K.5    Lee, T.D.6
  • 32
    • 0032537739 scopus 로고    scopus 로고
    • RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2
    • Raghunathan P.L., Guthrie C. RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2. Current Biology 1998, 8:847-855.
    • (1998) Current Biology , vol.8 , pp. 847-855
    • Raghunathan, P.L.1    Guthrie, C.2
  • 33
    • 0035053295 scopus 로고    scopus 로고
    • Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae
    • van Nues R.W., Beggs J.D. Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae. Genetics 2001, 157:1451-1467.
    • (2001) Genetics , vol.157 , pp. 1451-1467
    • van Nues, R.W.1    Beggs, J.D.2
  • 35
    • 58149231008 scopus 로고    scopus 로고
    • ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C-terminus of Prp8
    • Maeder C., Kutach A.K., Guthrie C. ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C-terminus of Prp8. Nature Structural & Molecular Biology 2009, 16:42-48.
    • (2009) Nature Structural & Molecular Biology , vol.16 , pp. 42-48
    • Maeder, C.1    Kutach, A.K.2    Guthrie, C.3
  • 36
    • 0026535919 scopus 로고
    • The purified yeast pre-mRNA splicing factor PRP2 is an RNA-dependent NTPase
    • Kim S.-H., Smith J., Claude A., Lin R.-J. The purified yeast pre-mRNA splicing factor PRP2 is an RNA-dependent NTPase. EMBO Journal 1992, 11:2319-2326.
    • (1992) EMBO Journal , vol.11 , pp. 2319-2326
    • Kim, S.-H.1    Smith, J.2    Claude, A.3    Lin, R.-J.4
  • 37
    • 0029312195 scopus 로고
    • The final stages of spliceosome maturation require Spp 2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing
    • Roy J., Kim K., Maddock J.R., Anthony J.G., Woolford J.L. The final stages of spliceosome maturation require Spp 2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing. RNA 1995, 1:375-390.
    • (1995) RNA , vol.1 , pp. 375-390
    • Roy, J.1    Kim, K.2    Maddock, J.R.3    Anthony, J.G.4    Woolford, J.L.5
  • 38
    • 1642540281 scopus 로고    scopus 로고
    • Definition of a spliceosome interaction domain in yeast Prp2 ATPase
    • Edwalds-Gilbert G., Kim D.-H., Silverman E., Lin R.-J. Definition of a spliceosome interaction domain in yeast Prp2 ATPase. RNA 2004, 10:210-220.
    • (2004) RNA , vol.10 , pp. 210-220
    • Edwalds-Gilbert, G.1    Kim, D.-H.2    Silverman, E.3    Lin, R.-J.4
  • 39
    • 0026019713 scopus 로고
    • PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome
    • Schwer B., Guthrie C. PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome. Nature 1991, 349:494-499.
    • (1991) Nature , vol.349 , pp. 494-499
    • Schwer, B.1    Guthrie, C.2
  • 40
    • 0031800746 scopus 로고    scopus 로고
    • Mutational analysis of the yeast DEAH-box splicing factor Prp16
    • Hotz H.-R., Schwer B. Mutational analysis of the yeast DEAH-box splicing factor Prp16. Genetics 1998, 149:807-815.
    • (1998) Genetics , vol.149 , pp. 807-815
    • Hotz, H.-R.1    Schwer, B.2
  • 41
    • 0032499075 scopus 로고    scopus 로고
    • The DEAH-box splicing factor Prp16 unwinds RNA duplexes in vitro
    • Wang Y., Wagner J.D., Guthrie C. The DEAH-box splicing factor Prp16 unwinds RNA duplexes in vitro. Current Biology 1998, 8:441-451.
    • (1998) Current Biology , vol.8 , pp. 441-451
    • Wang, Y.1    Wagner, J.D.2    Guthrie, C.3
  • 42
    • 78650446117 scopus 로고    scopus 로고
    • DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps
    • Tseng C.K., Liu H.L., Cheng S.C. DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps. RNA 2011, 17:145-154.
    • (2011) RNA , vol.17 , pp. 145-154
    • Tseng, C.K.1    Liu, H.L.2    Cheng, S.C.3
  • 43
    • 0032055765 scopus 로고    scopus 로고
    • Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing
    • Schwer B., Gross C.H. Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing. EMBO Journal 1998, 17:2086-2094.
    • (1998) EMBO Journal , vol.17 , pp. 2086-2094
    • Schwer, B.1    Gross, C.H.2
  • 44
    • 1542275531 scopus 로고    scopus 로고
    • Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8
    • Schneider S., Campodonico E., Schwer B. Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8. Journal of Biological Chemistry 2004, 279:8617-8626.
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 8617-8626
    • Schneider, S.1    Campodonico, E.2    Schwer, B.3
  • 45
    • 0034423411 scopus 로고    scopus 로고
    • RNA helicase dynamics in pre-mRNA splicing
    • Schwer B., Meszaros T. RNA helicase dynamics in pre-mRNA splicing. EMBO Journal 2000, 19:6582-6591.
    • (2000) EMBO Journal , vol.19 , pp. 6582-6591
    • Schwer, B.1    Meszaros, T.2
  • 47
    • 0028923775 scopus 로고
    • High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: comparison of natural and unnatural binding sites
    • Ringquist S., Jones T., Snyder E.E., Gibson T., Boni I., Gold L. High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: comparison of natural and unnatural binding sites. Biochemistry 1995, 34:3640-3648.
    • (1995) Biochemistry , vol.34 , pp. 3640-3648
    • Ringquist, S.1    Jones, T.2    Snyder, E.E.3    Gibson, T.4    Boni, I.5    Gold, L.6
  • 49
    • 0037124096 scopus 로고    scopus 로고
    • Prp43 is an essential RNA-dependent ATPase required for release of lariat intron from the spliceosome
    • Martin A., Schneider S., Schwer B. Prp43 is an essential RNA-dependent ATPase required for release of lariat intron from the spliceosome. Journal of Biological Chemistry 2002, 277:17743-17750.
    • (2002) Journal of Biological Chemistry , vol.277 , pp. 17743-17750
    • Martin, A.1    Schneider, S.2    Schwer, B.3
  • 50
    • 33646862141 scopus 로고    scopus 로고
    • Mutations in PRP43 that uncouple RNA-dependent NTPase activity and pre-mRNA splicing function
    • Tanaka N., Schwer B. Mutations in PRP43 that uncouple RNA-dependent NTPase activity and pre-mRNA splicing function. Biochemistry 2006, 45:6510-6521.
    • (2006) Biochemistry , vol.45 , pp. 6510-6521
    • Tanaka, N.1    Schwer, B.2
  • 51
    • 0034857262 scopus 로고    scopus 로고
    • DExD/H box RNA helicases: from generic motors to specific dissociation functions
    • Tanner N.K., Linder P. DExD/H box RNA helicases: from generic motors to specific dissociation functions. Molecular Cell 2001, 8:251-262.
    • (2001) Molecular Cell , vol.8 , pp. 251-262
    • Tanner, N.K.1    Linder, P.2


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