-
1
-
-
35548979157
-
Livestock genomics: bridging the gap between mice and men
-
de Koning DJ, Archibald A, Haley CS. Livestock genomics: bridging the gap between mice and men. Trends Biotechnol 2007, 25(11):483-489.
-
(2007)
Trends Biotechnol
, vol.25
, Issue.11
, pp. 483-489
-
-
de Koning, D.J.1
Archibald, A.2
Haley, C.S.3
-
2
-
-
77951621301
-
The genome sequence of taurine cattle: a window to ruminant biology and evolution
-
Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigo R, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 2009, 324(5926):522-528.
-
(2009)
Science
, vol.324
, Issue.5926
, pp. 522-528
-
-
Elsik, C.G.1
Tellam, R.L.2
Worley, K.C.3
Gibbs, R.A.4
Muzny, D.M.5
Weinstock, G.M.6
Adelson, D.L.7
Eichler, E.E.8
Elnitski, L.9
Guigo, R.10
-
3
-
-
65449132092
-
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds
-
Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, et al. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science 2009, 324(5926):528-532.
-
(2009)
Science
, vol.324
, Issue.5926
, pp. 528-532
-
-
Gibbs, R.A.1
Taylor, J.F.2
Van Tassell, C.P.3
Barendse, W.4
Eversole, K.A.5
Gill, C.A.6
Green, R.D.7
Hamernik, D.L.8
Kappes, S.M.9
Lien, S.10
-
4
-
-
65649102662
-
Unlocking the bovine genome
-
Tellam RL, Lemay DG, Van Tassell CP, Lewin HA, Worley KC, Elsik CG. Unlocking the bovine genome. BMC Genomics 2009, 10:193.
-
(2009)
BMC Genomics
, vol.10
, pp. 193
-
-
Tellam, R.L.1
Lemay, D.G.2
Van Tassell, C.P.3
Lewin, H.A.4
Worley, K.C.5
Elsik, C.G.6
-
5
-
-
67149099401
-
The genome-assisted barnyard
-
Editorial
-
Editorial The genome-assisted barnyard. Nat Biotechnol 2009, 27(6):487. Editorial.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.6
, pp. 487
-
-
-
6
-
-
33846836962
-
Animal QTLdb: beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information
-
Hu ZL, Reecy JM. Animal QTLdb: beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information. Mamm Genome 2007, 18(1):1-4.
-
(2007)
Mamm Genome
, vol.18
, Issue.1
, pp. 1-4
-
-
Hu, Z.L.1
Reecy, J.M.2
-
7
-
-
65549113578
-
The bovine lactation genome: insights into the evolution of mammalian milk
-
Lemay DG, Lynn DJ, Martin WF, Neville MC, Casey TM, Rincon G, Kriventseva EV, Barris WC, Hinrichs AS, Molenaar AJ, et al. The bovine lactation genome: insights into the evolution of mammalian milk. Genome Biol 2009, 10(4):R43.
-
(2009)
Genome Biol
, vol.10
, Issue.4
-
-
Lemay, D.G.1
Lynn, D.J.2
Martin, W.F.3
Neville, M.C.4
Casey, T.M.5
Rincon, G.6
Kriventseva, E.V.7
Barris, W.C.8
Hinrichs, A.S.9
Molenaar, A.J.10
-
8
-
-
78651321210
-
Bovine Genome Database: integrated tools for genome annotation and discovery
-
Database
-
Childers CP, Reese JT, Sundaram JP, Vile DC, Dickens CM, Childs KL, Salih H, Bennett AK, Hagen DE, Adelson DL, et al. Bovine Genome Database: integrated tools for genome annotation and discovery. Nucleic Acids Res 2011, (39 Database):D830-834.
-
(2011)
Nucleic Acids Res
, Issue.39
-
-
Childers, C.P.1
Reese, J.T.2
Sundaram, J.P.3
Vile, D.C.4
Dickens, C.M.5
Childs, K.L.6
Salih, H.7
Bennett, A.K.8
Hagen, D.E.9
Adelson, D.L.10
-
9
-
-
42449101135
-
A critical analysis of disease-associated DNA polymorphisms in the genes of cattle, goat, sheep, and pig
-
Ibeagha-Awemu EM, Kgwatalala P, Ibeagha AE, Zhao X. A critical analysis of disease-associated DNA polymorphisms in the genes of cattle, goat, sheep, and pig. Mamm Genome 2008, 19(4):226-245.
-
(2008)
Mamm Genome
, vol.19
, Issue.4
, pp. 226-245
-
-
Ibeagha-Awemu, E.M.1
Kgwatalala, P.2
Ibeagha, A.E.3
Zhao, X.4
-
10
-
-
77957991364
-
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
-
Harhay GP, Smith TP, Alexander LJ, Haudenschild CD, Keele JW, Matukumalli LK, Schroeder SG, Van Tassell CP, Gresham CR, Bridges SM, et al. An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation. Genome Biol 2010, 11(10):R102.
-
(2010)
Genome Biol
, vol.11
, Issue.10
-
-
Harhay, G.P.1
Smith, T.P.2
Alexander, L.J.3
Haudenschild, C.D.4
Keele, J.W.5
Matukumalli, L.K.6
Schroeder, S.G.7
Van Tassell, C.P.8
Gresham, C.R.9
Bridges, S.M.10
-
11
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci USA 2009, 106(23):9362-9367.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.23
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
Manolio, T.A.7
-
12
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen TH, Hayes BJ, Goddard ME. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157(4):1819-1829.
-
(2001)
Genetics
, vol.157
, Issue.4
, pp. 1819-1829
-
-
Meuwissen, T.H.1
Hayes, B.J.2
Goddard, M.E.3
-
13
-
-
66249122107
-
Mapping genes for complex traits in domestic animals and their use in breeding programmes
-
Goddard ME, Hayes BJ. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet 2009, 10(6):381-391.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.6
, pp. 381-391
-
-
Goddard, M.E.1
Hayes, B.J.2
-
14
-
-
11244313872
-
Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data
-
Nielsen R, Hubisz MJ, Clark AG. Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data. Genetics 2004, 168(4):2373-2382.
-
(2004)
Genetics
, vol.168
, Issue.4
, pp. 2373-2382
-
-
Nielsen, R.1
Hubisz, M.J.2
Clark, A.G.3
-
15
-
-
27544474337
-
Ascertainment bias in studies of human genome-wide polymorphism
-
Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. Ascertainment bias in studies of human genome-wide polymorphism. Genome Res 2005, 15(11):1496-1502.
-
(2005)
Genome Res
, vol.15
, Issue.11
, pp. 1496-1502
-
-
Clark, A.G.1
Hubisz, M.J.2
Bustamante, C.D.3
Williamson, S.H.4
Nielsen, R.5
-
16
-
-
70449704529
-
Computational methods for discovering structural variation with next-generation sequencing
-
Medvedev P, Stanciu M, Brudno M. Computational methods for discovering structural variation with next-generation sequencing. Nat Methods 2009, 6(11 Suppl):S13-20.
-
(2009)
Nat Methods
, vol.6
, Issue.11 SUPPL
-
-
Medvedev, P.1
Stanciu, M.2
Brudno, M.3
-
17
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C. Detection of large-scale variation in the human genome. Nat Genet 2004, 36(9):949-951.
-
(2004)
Nat Genet
, vol.36
, Issue.9
, pp. 949-951
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
Scherer, S.W.7
Lee, C.8
-
18
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, Maner S, Massa H, Walker M, Chi M, et al. Large-scale copy number polymorphism in the human genome. Science 2004, 305(5683):525-528.
-
(2004)
Science
, vol.305
, Issue.5683
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
Maner, S.7
Massa, H.8
Walker, M.9
Chi, M.10
-
19
-
-
33751329250
-
Global variation in copy number in the human genome
-
Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, Shapero MH, Carson AR, Chen W, et al. Global variation in copy number in the human genome. Nature 2006, 444(7118):444-454.
-
(2006)
Nature
, vol.444
, Issue.7118
, pp. 444-454
-
-
Redon, R.1
Ishikawa, S.2
Fitch, K.R.3
Feuk, L.4
Perry, G.H.5
Andrews, T.D.6
Fiegler, H.7
Shapero, M.H.8
Carson, A.R.9
Chen, W.10
-
20
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, et al. The diploid genome sequence of an individual human. PLoS Biol 2007, 5(10):e254.
-
(2007)
PLoS Biol
, vol.5
, Issue.10
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
Feuk, L.4
Halpern, A.L.5
Walenz, B.P.6
Axelrod, N.7
Huang, J.8
Kirkness, E.F.9
Denisov, G.10
-
21
-
-
70350221909
-
Copy number variation in human health, disease, and evolution
-
Zhang F, Gu W, Hurles ME, Lupski JR. Copy number variation in human health, disease, and evolution. Annu Rev Genomics Hum Genet 2009, 10:451-481.
-
(2009)
Annu Rev Genomics Hum Genet
, vol.10
, pp. 451-481
-
-
Zhang, F.1
Gu, W.2
Hurles, M.E.3
Lupski, J.R.4
-
22
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, Zhang Y, Aerts J, Andrews TD, Barnes C, Campbell P, et al. Origins and functional impact of copy number variation in the human genome. Nature 2010, 464(7289):704-712.
-
(2010)
Nature
, vol.464
, Issue.7289
, pp. 704-712
-
-
Conrad, D.F.1
Pinto, D.2
Redon, R.3
Feuk, L.4
Gokcumen, O.5
Zhang, Y.6
Aerts, J.7
Andrews, T.D.8
Barnes, C.9
Campbell, P.10
-
23
-
-
77949831756
-
Structural variation in the human genome and its role in disease
-
Stankiewicz P, Lupski JR. Structural variation in the human genome and its role in disease. Annu Rev Med 2010, 61:437-455.
-
(2010)
Annu Rev Med
, vol.61
, pp. 437-455
-
-
Stankiewicz, P.1
Lupski, J.R.2
-
24
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Consortium GP. A map of human genome variation from population-scale sequencing. Nature 2010, 467(7319):1061-1073.
-
(2010)
Nature
, vol.467
, Issue.7319
, pp. 1061-1073
-
-
Consortium, G.P.1
-
25
-
-
50249123078
-
Detection of germline and somatic copy number variations in cattle
-
Liu GE, Van Tassel CP, Sonstegard TS, Li RW, Alexander LJ, Keele JW, Matukumalli LK, Smith TP, Gasbarre LC. Detection of germline and somatic copy number variations in cattle. Dev Biol (Basel) 2008, 132:231-237.
-
(2008)
Dev Biol (Basel)
, vol.132
, pp. 231-237
-
-
Liu, G.E.1
Van Tassel, C.P.2
Sonstegard, T.S.3
Li, R.W.4
Alexander, L.J.5
Keele, J.W.6
Matukumalli, L.K.7
Smith, T.P.8
Gasbarre, L.C.9
-
26
-
-
67651107321
-
Development and characterization of a high density SNP genotyping assay for cattle
-
Matukumalli LK, Lawley CT, Schnabel RD, Taylor JF, Allan MF, Heaton MP, O'Connell J, Moore SS, Smith TP, Sonstegard TS, et al. Development and characterization of a high density SNP genotyping assay for cattle. PLoS One 2009, 4(4):e5350.
-
(2009)
PLoS One
, vol.4
, Issue.4
-
-
Matukumalli, L.K.1
Lawley, C.T.2
Schnabel, R.D.3
Taylor, J.F.4
Allan, M.F.5
Heaton, M.P.6
O'Connell, J.7
Moore, S.S.8
Smith, T.P.9
Sonstegard, T.S.10
-
27
-
-
77950637626
-
Identification of copy number variations and common deletion polymorphisms in cattle
-
Bae JS, Cheong HS, Kim LH, NamGung S, Park TJ, Chun JY, Kim JY, Pasaje CF, Lee JS, Shin HD. Identification of copy number variations and common deletion polymorphisms in cattle. BMC Genomics 2010, 11:232.
-
(2010)
BMC Genomics
, vol.11
, pp. 232
-
-
Bae, J.S.1
Cheong, H.S.2
Kim, L.H.3
NamGung, S.4
Park, T.J.5
Chun, J.Y.6
Kim, J.Y.7
Pasaje, C.F.8
Lee, J.S.9
Shin, H.D.10
-
28
-
-
77951798133
-
Analysis of copy number variations among diverse cattle breeds
-
Liu GE, Hou Y, Zhu B, Cardone MF, Jiang L, Cellamare A, Mitra A, Alexander LJ, Coutinho LL, Dell Aquila ME, et al. Analysis of copy number variations among diverse cattle breeds. Genome Res 2010, 20(5):693-703.
-
(2010)
Genome Res
, vol.20
, Issue.5
, pp. 693-703
-
-
Liu, G.E.1
Hou, Y.2
Zhu, B.3
Cardone, M.F.4
Jiang, L.5
Cellamare, A.6
Mitra, A.7
Alexander, L.J.8
Coutinho, L.L.9
Dell Aquila, M.E.10
-
29
-
-
77951840186
-
Copy number variation in the bovine genome
-
Fadista J, Thomsen B, Holm LE, Bendixen C. Copy number variation in the bovine genome. BMC Genomics 2010, 11:284.
-
(2010)
BMC Genomics
, vol.11
, pp. 284
-
-
Fadista, J.1
Thomsen, B.2
Holm, L.E.3
Bendixen, C.4
-
30
-
-
78649351737
-
Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs
-
Seroussi E, Glick G, Shirak A, Yakobson E, Weller JI, Ezra E, Zeron Y. Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs. BMC Genomics 2010, 11:673.
-
(2010)
BMC Genomics
, vol.11
, pp. 673
-
-
Seroussi, E.1
Glick, G.2
Shirak, A.3
Yakobson, E.4
Weller, J.I.5
Ezra, E.6
Zeron, Y.7
-
31
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24(3):133-141.
-
(2008)
Trends Genet
, vol.24
, Issue.3
, pp. 133-141
-
-
Mardis, E.R.1
-
32
-
-
72849144434
-
Sequencing technologies - the next generation
-
Metzker ML. Sequencing technologies - the next generation. Nat Rev Genet 2010, 11(1):31-46.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.1
, pp. 31-46
-
-
Metzker, M.L.1
-
33
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, et al. The complete genome of an individual by massively parallel DNA sequencing. Nature 2008, 452(7189):872-876.
-
(2008)
Nature
, vol.452
, Issue.7189
, pp. 872-876
-
-
Wheeler, D.A.1
Srinivasan, M.2
Egholm, M.3
Shen, Y.4
Chen, L.5
McGuire, A.6
He, W.7
Chen, Y.J.8
Makhijani, V.9
Roth, G.T.10
-
34
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 2008, 456(7218):53-59.
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
Brown, C.G.6
Hall, K.P.7
Evers, D.J.8
Barnes, C.L.9
Bignell, H.R.10
-
35
-
-
55549097849
-
The diploid genome sequence of an Asian individual
-
Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Guo Y, et al. The diploid genome sequence of an Asian individual. Nature 2008, 456(7218):60-65.
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 60-65
-
-
Wang, J.1
Wang, W.2
Li, R.3
Li, Y.4
Tian, G.5
Goodman, L.6
Fan, W.7
Zhang, J.8
Li, J.9
Guo, Y.10
-
36
-
-
69749124820
-
The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group
-
Ahn SM, Kim TH, Lee S, Kim D, Ghang H, Kim DS, Kim BC, Kim SY, Kim WY, Kim C, et al. The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group. Genome Res 2009, 19(9):1622-1629.
-
(2009)
Genome Res
, vol.19
, Issue.9
, pp. 1622-1629
-
-
Ahn, S.M.1
Kim, T.H.2
Lee, S.3
Kim, D.4
Ghang, H.5
Kim, D.S.6
Kim, B.C.7
Kim, S.Y.8
Kim, W.Y.9
Kim, C.10
-
37
-
-
69749090013
-
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
-
McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu Y, Tsung EF, Clouser CR, Duncan C, Ichikawa JK, Lee CC, et al. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Res 2009, 19(9):1527-1541.
-
(2009)
Genome Res
, vol.19
, Issue.9
, pp. 1527-1541
-
-
McKernan, K.J.1
Peckham, H.E.2
Costa, G.L.3
McLaughlin, S.F.4
Fu, Y.5
Tsung, E.F.6
Clouser, C.R.7
Duncan, C.8
Ichikawa, J.K.9
Lee, C.C.10
-
38
-
-
69249232047
-
A highly annotated whole-genome sequence of a Korean individual
-
Kim JI, Ju YS, Park H, Kim S, Lee S, Yi JH, Mudge J, Miller NA, Hong D, Bell CJ, et al. A highly annotated whole-genome sequence of a Korean individual. Nature 2009, 460(7258):1011-1015.
-
(2009)
Nature
, vol.460
, Issue.7258
, pp. 1011-1015
-
-
Kim, J.I.1
Ju, Y.S.2
Park, H.3
Kim, S.4
Lee, S.5
Yi, J.H.6
Mudge, J.7
Miller, N.A.8
Hong, D.9
Bell, C.J.10
-
39
-
-
70249089090
-
Single-molecule sequencing of an individual human genome
-
Pushkarev D, Neff NF, Quake SR. Single-molecule sequencing of an individual human genome. Nat Biotechnol 2009, 27(9):847-850.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.9
, pp. 847-850
-
-
Pushkarev, D.1
Neff, N.F.2
Quake, S.R.3
-
40
-
-
77956467633
-
Sequencing and analysis of an Irish human genome
-
Tong P, Prendergast JG, Lohan AJ, Farrington SM, Cronin S, Friel N, Bradley DG, Hardiman O, Evans A, Wilson JF, et al. Sequencing and analysis of an Irish human genome. Genome Biol 2010, 11(9):R91.
-
(2010)
Genome Biol
, vol.11
, Issue.9
-
-
Tong, P.1
Prendergast, J.G.2
Lohan, A.J.3
Farrington, S.M.4
Cronin, S.5
Friel, N.6
Bradley, D.G.7
Hardiman, O.8
Evans, A.9
Wilson, J.F.10
-
41
-
-
77249155642
-
Complete Khoisan and Bantu genomes from southern Africa
-
Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, et al. Complete Khoisan and Bantu genomes from southern Africa. Nature 2010, 463(7283):943-947.
-
(2010)
Nature
, vol.463
, Issue.7283
, pp. 943-947
-
-
Schuster, S.C.1
Miller, W.2
Ratan, A.3
Tomsho, L.P.4
Giardine, B.5
Kasson, L.R.6
Harris, R.S.7
Petersen, D.C.8
Zhao, F.9
Qi, J.10
-
42
-
-
77950475726
-
Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy
-
Lupski JR, Reid JG, Gonzaga-Jauregui C, Rio Deiros D, Chen DC, Nazareth L, Bainbridge M, Dinh H, Jing C, Wheeler DA, et al. Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy. N Engl J Med 2010, 362(13):1181-1191.
-
(2010)
N Engl J Med
, vol.362
, Issue.13
, pp. 1181-1191
-
-
Lupski, J.R.1
Reid, J.G.2
Gonzaga-Jauregui, C.3
Rio Deiros, D.4
Chen, D.C.5
Nazareth, L.6
Bainbridge, M.7
Dinh, H.8
Jing, C.9
Wheeler, D.A.10
-
43
-
-
78049416608
-
The characterization of twenty sequenced human genomes
-
Pelak K, Shianna KV, Ge D, Maia JM, Zhu M, Smith JP, Cirulli ET, Fellay J, Dickson SP, Gumbs CE, et al. The characterization of twenty sequenced human genomes. PLoS Genet 2010, 6(9).
-
(2010)
PLoS Genet
, vol.6
, Issue.9
-
-
Pelak, K.1
Shianna, K.V.2
Ge, D.3
Maia, J.M.4
Zhu, M.5
Smith, J.P.6
Cirulli, E.T.7
Fellay, J.8
Dickson, S.P.9
Gumbs, C.E.10
-
44
-
-
33746921634
-
The personal genome project
-
2005 0030
-
Church GM. The personal genome project. Mol Syst Biol 2005, 1. 2005 0030.
-
(2005)
Mol Syst Biol
, vol.1
-
-
Church, G.M.1
-
45
-
-
77955482663
-
Accurate prediction of genetic values for complex traits by whole-genome resequencing
-
Meuwissen T, Goddard M. Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics 2010, 185(2):623-631.
-
(2010)
Genetics
, vol.185
, Issue.2
, pp. 623-631
-
-
Meuwissen, T.1
Goddard, M.2
-
46
-
-
70350002071
-
Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery
-
Eck SH, Benet-Pages A, Flisikowski K, Meitinger T, Fries R, Strom TM. Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery. Genome Biol 2009, 10(8):R82.
-
(2009)
Genome Biol
, vol.10
, Issue.8
-
-
Eck, S.H.1
Benet-Pages, A.2
Flisikowski, K.3
Meitinger, T.4
Fries, R.5
Strom, T.M.6
-
47
-
-
79751534622
-
Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi
-
Kawahara-Miki R, Tsuda K, Shiwa Y, Arai-Kichise Y, Matsumoto T, Kanesaki Y, Oda S, Ebihara S, Yajima S, Yoshikawa H, et al. Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi. BMC Genomics 2011, 12:103.
-
(2011)
BMC Genomics
, vol.12
, pp. 103
-
-
Kawahara-Miki, R.1
Tsuda, K.2
Shiwa, Y.3
Arai-Kichise, Y.4
Matsumoto, T.5
Kanesaki, Y.6
Oda, S.7
Ebihara, S.8
Yajima, S.9
Yoshikawa, H.10
-
48
-
-
70350010196
-
Sequencing genomes: from individuals to populations
-
Mir KU. Sequencing genomes: from individuals to populations. Brief Funct Genomic Proteomic 2009, 8(5):367-378.
-
(2009)
Brief Funct Genomic Proteomic
, vol.8
, Issue.5
, pp. 367-378
-
-
Mir, K.U.1
-
49
-
-
78449280912
-
Massive parallel sequencing in animal genetics: wherefroms and wheretos
-
Perez-Enciso M, Ferretti L. Massive parallel sequencing in animal genetics: wherefroms and wheretos. Anim Genet 2010, 41(6):561-569.
-
(2010)
Anim Genet
, vol.41
, Issue.6
, pp. 561-569
-
-
Perez-Enciso, M.1
Ferretti, L.2
-
50
-
-
84855205006
-
MOSAIK
-
MOSAIK. , http://bioinformatics.bc.edu/marthlab/Mosaik
-
-
-
-
51
-
-
84855205008
-
GigaBayes
-
gigaBayes. , http://bioinformatics.bc.edu/marthlab/GigaBayes
-
-
-
-
52
-
-
84855189952
-
CLCBio Genomic Workbench
-
CLCBio Genomic Workbench. , http://www.clcbio.com
-
-
-
-
53
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
54
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
55
-
-
84855205007
-
SMALT
-
SMALT. , http://www.sanger.ac.uk/resources/software/smalt/
-
-
-
-
56
-
-
38749149152
-
Whole-genome sequencing and variant discovery in C. elegans
-
Hillier LW, Marth GT, Quinlan AR, Dooling D, Fewell G, Barnett D, Fox P, Glasscock JI, Hickenbotham M, Huang W, et al. Whole-genome sequencing and variant discovery in C. elegans. Nat Methods 2008, 5(2):183-188.
-
(2008)
Nat Methods
, vol.5
, Issue.2
, pp. 183-188
-
-
Hillier, L.W.1
Marth, G.T.2
Quinlan, A.R.3
Dooling, D.4
Fewell, G.5
Barnett, D.6
Fox, P.7
Glasscock, J.I.8
Hickenbotham, M.9
Huang, W.10
-
57
-
-
79957932376
-
Dindel: accurate indel calls from short-read data
-
Albers CA, Lunter G, MacArthur DG, McVean G, Ouwehand WH, Durbin R. Dindel: accurate indel calls from short-read data. Genome Res 2011, 21(6):961-973.
-
(2011)
Genome Res
, vol.21
, Issue.6
, pp. 961-973
-
-
Albers, C.A.1
Lunter, G.2
MacArthur, D.G.3
McVean, G.4
Ouwehand, W.H.5
Durbin, R.6
-
58
-
-
70350694443
-
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye K, Schulz MH, Long Q, Apweiler R, Ning Z. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 2009, 25(21):2865-2871.
-
(2009)
Bioinformatics
, vol.25
, Issue.21
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.5
-
59
-
-
69549116107
-
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
-
Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, et al. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods 2009, 6(9):677-681.
-
(2009)
Nat Methods
, vol.6
, Issue.9
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
Pohl, C.S.6
McGrath, S.D.7
Wendl, M.C.8
Zhang, Q.9
Locke, D.P.10
-
60
-
-
64849083125
-
CNV-seq, a new method to detect copy number variation using high-throughput sequencing
-
Xie C, Tammi MT. CNV-seq, a new method to detect copy number variation using high-throughput sequencing. BMC Bioinformatics 2009, 10:80.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 80
-
-
Xie, C.1
Tammi, M.T.2
-
61
-
-
35948984173
-
PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
-
Wang K, Li M, Hadley D, Liu R, Glessner J, Grant SF, Hakonarson H, Bucan M. PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res 2007, 17(11):1665-1674.
-
(2007)
Genome Res
, vol.17
, Issue.11
, pp. 1665-1674
-
-
Wang, K.1
Li, M.2
Hadley, D.3
Liu, R.4
Glessner, J.5
Grant, S.F.6
Hakonarson, H.7
Bucan, M.8
-
62
-
-
0029957181
-
Real time quantitative PCR
-
Heid CA, Stevens J, Livak KJ, Williams PM. Real time quantitative PCR. Genome Res 1996, 6(10):986-994.
-
(1996)
Genome Res
, vol.6
, Issue.10
, pp. 986-994
-
-
Heid, C.A.1
Stevens, J.2
Livak, K.J.3
Williams, P.M.4
-
63
-
-
52649157765
-
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
-
Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36(16):e105.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.16
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
Himmelbauer, H.4
-
64
-
-
48449094744
-
Alta-Cyclic: a self-optimizing base caller for next-generation sequencing
-
Erlich Y, Mitra PP, delaBastide M, McCombie WR, Hannon GJ. Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nat Methods 2008, 5(8):679-682.
-
(2008)
Nat Methods
, vol.5
, Issue.8
, pp. 679-682
-
-
Erlich, Y.1
Mitra, P.P.2
delaBastide, M.3
McCombie, W.R.4
Hannon, G.J.5
-
65
-
-
65449144325
-
Evaluation of next generation sequencing platforms for population targeted sequencing studies
-
Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, Beeson KY, Schork NJ, Murray SS, Topol EJ, Levy S, et al. Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biol 2009, 10(3):R32.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Harismendy, O.1
Ng, P.C.2
Strausberg, R.L.3
Wang, X.4
Stockwell, T.B.5
Beeson, K.Y.6
Schork, N.J.7
Murray, S.S.8
Topol, E.J.9
Levy, S.10
-
66
-
-
78751682536
-
Overcoming bias and systematic errors in next generation sequencing data
-
Taub MA, Corrada Bravo H, Irizarry RA. Overcoming bias and systematic errors in next generation sequencing data. Genome Med 2010, 2(12):87.
-
(2010)
Genome Med
, vol.2
, Issue.12
, pp. 87
-
-
Taub, M.A.1
Corrada Bravo, H.2
Irizarry, R.A.3
-
67
-
-
65149096757
-
A whole-genome assembly of the domestic cow, Bos taurus
-
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, et al. A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol 2009, 10(4):R42.
-
(2009)
Genome Biol
, vol.10
, Issue.4
-
-
Zimin, A.V.1
Delcher, A.L.2
Florea, L.3
Kelley, D.R.4
Schatz, M.C.5
Puiu, D.6
Hanrahan, F.7
Pertea, G.8
Van Tassell, C.P.9
Sonstegard, T.S.10
-
68
-
-
63849281404
-
Common polymorphic transcript variation in human disease
-
Fraser HB, Xie X. Common polymorphic transcript variation in human disease. Genome Res 2009, 19(4):567-575.
-
(2009)
Genome Res
, vol.19
, Issue.4
, pp. 567-575
-
-
Fraser, H.B.1
Xie, X.2
-
69
-
-
33748678900
-
Identification of a unique splice site variant in SLC39A4 in bovine hereditary zinc deficiency, lethal trait A46: An animal model of acrodermatitis enteropathica
-
Yuzbasiyan-Gurkan V, Bartlett E. Identification of a unique splice site variant in SLC39A4 in bovine hereditary zinc deficiency, lethal trait A46: An animal model of acrodermatitis enteropathica. Genomics 2006, 88(4):521-526.
-
(2006)
Genomics
, vol.88
, Issue.4
, pp. 521-526
-
-
Yuzbasiyan-Gurkan, V.1
Bartlett, E.2
-
70
-
-
78549278120
-
Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes
-
Whan V, Hobbs M, McWilliam S, Lynn DJ, Lutzow YS, Khatkar M, Barendse W, Raadsma H, Tellam RL. Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes. BMC Genomics 2010, 11:654.
-
(2010)
BMC Genomics
, vol.11
, pp. 654
-
-
Whan, V.1
Hobbs, M.2
McWilliam, S.3
Lynn, D.J.4
Lutzow, Y.S.5
Khatkar, M.6
Barendse, W.7
Raadsma, H.8
Tellam, R.L.9
-
71
-
-
0043122919
-
SIFT: Predicting amino acid changes that affect protein function
-
Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res 2003, 31(13):3812-3814.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3812-3814
-
-
Ng, P.C.1
Henikoff, S.2
-
72
-
-
0036713510
-
Human non-synonymous SNPs: server and survey
-
Ramensky V, Bork P, Sunyaev S. Human non-synonymous SNPs: server and survey. Nucleic Acids Res 2002, 30(17):3894-3900.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.17
, pp. 3894-3900
-
-
Ramensky, V.1
Bork, P.2
Sunyaev, S.3
-
73
-
-
0033828761
-
Estimate of the mutation rate per nucleotide in humans
-
Nachman MW, Crowell SL. Estimate of the mutation rate per nucleotide in humans. Genetics 2000, 156(1):297-304.
-
(2000)
Genetics
, vol.156
, Issue.1
, pp. 297-304
-
-
Nachman, M.W.1
Crowell, S.L.2
-
74
-
-
0030992056
-
Evidence for a selectively favourable reduction in the mutation rate of the X chromosome
-
McVean GT, Hurst LD. Evidence for a selectively favourable reduction in the mutation rate of the X chromosome. Nature 1997, 386(6623):388-392.
-
(1997)
Nature
, vol.386
, Issue.6623
, pp. 388-392
-
-
McVean, G.T.1
Hurst, L.D.2
-
75
-
-
84855189950
-
Imprinted gene databases
-
Imprinted gene databases. , http://www.geneimprint.org
-
-
-
-
76
-
-
0030940219
-
Molecular evolution of imprinted genes: no evidence for antagonistic coevolution
-
McVean GT, Hurst LD. Molecular evolution of imprinted genes: no evidence for antagonistic coevolution. Proc Biol Sci 1997, 264(1382):739-746.
-
(1997)
Proc Biol Sci
, vol.264
, Issue.1382
, pp. 739-746
-
-
McVean, G.T.1
Hurst, L.D.2
-
77
-
-
34447521864
-
Positive darwinian selection at the imprinted MEDEA locus in plants
-
Spillane C, Schmid KJ, Laoueille-Duprat S, Pien S, Escobar-Restrepo JM, Baroux C, Gagliardini V, Page DR, Wolfe KH, Grossniklaus U. Positive darwinian selection at the imprinted MEDEA locus in plants. Nature 2007, 448(7151):349-352.
-
(2007)
Nature
, vol.448
, Issue.7151
, pp. 349-352
-
-
Spillane, C.1
Schmid, K.J.2
Laoueille-Duprat, S.3
Pien, S.4
Escobar-Restrepo, J.M.5
Baroux, C.6
Gagliardini, V.7
Page, D.R.8
Wolfe, K.H.9
Grossniklaus, U.10
-
78
-
-
84855196466
-
Pedigraph
-
Pedigraph. , http://animalgene.umn.edu/pedigraph/
-
-
-
-
79
-
-
78649730822
-
Genomic runs of homozygosity record population history and consanguinity
-
Kirin M, McQuillan R, Franklin CS, Campbell H, McKeigue PM, Wilson JF. Genomic runs of homozygosity record population history and consanguinity. PLoS One 2010, 5(11):e13996.
-
(2010)
PLoS One
, vol.5
, Issue.11
-
-
Kirin, M.1
McQuillan, R.2
Franklin, C.S.3
Campbell, H.4
McKeigue, P.M.5
Wilson, J.F.6
-
80
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18(11):1851-1858.
-
(2008)
Genome Res
, vol.18
, Issue.11
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
81
-
-
79954553212
-
Improving SNP discovery by base alignment quality
-
Li H. Improving SNP discovery by base alignment quality. Bioinformatics 2011, 27(8):1157-1158.
-
(2011)
Bioinformatics
, vol.27
, Issue.8
, pp. 1157-1158
-
-
Li, H.1
-
82
-
-
84855205003
-
SAMTools FAQ
-
SAMTools FAQ. , http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_FAQ
-
-
-
-
83
-
-
0031916242
-
Rates of spontaneous mutation
-
Drake JW, Charlesworth B, Charlesworth D, Crow JF. Rates of spontaneous mutation. Genetics 1998, 148(4):1667-1686.
-
(1998)
Genetics
, vol.148
, Issue.4
, pp. 1667-1686
-
-
Drake, J.W.1
Charlesworth, B.2
Charlesworth, D.3
Crow, J.F.4
-
84
-
-
34547830856
-
Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes
-
Lunter G. Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes. Bioinformatics 2007, 23(13):i289-296.
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Lunter, G.1
-
85
-
-
58449127271
-
Problems and solutions for estimating indel rates and length distributions
-
Cartwright RA. Problems and solutions for estimating indel rates and length distributions. Mol Biol Evol 2009, 26(2):473-480.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.2
, pp. 473-480
-
-
Cartwright, R.A.1
-
86
-
-
33748271469
-
An initial map of insertion and deletion (INDEL) variation in the human genome
-
Mills RE, Luttig CT, Larkins CE, Beauchamp A, Tsui C, Pittard WS, Devine SE. An initial map of insertion and deletion (INDEL) variation in the human genome. Genome Res 2006, 16(9):1182-1190.
-
(2006)
Genome Res
, vol.16
, Issue.9
, pp. 1182-1190
-
-
Mills, R.E.1
Luttig, C.T.2
Larkins, C.E.3
Beauchamp, A.4
Tsui, C.5
Pittard, W.S.6
Devine, S.E.7
-
87
-
-
50849127837
-
Genetic variation in an individual human exome
-
Ng PC, Levy S, Huang J, Stockwell TB, Walenz BP, Li K, Axelrod N, Busam DA, Strausberg RL, Venter JC. Genetic variation in an individual human exome. PLoS Genet 2008, 4(8):e1000160.
-
(2008)
PLoS Genet
, vol.4
, Issue.8
-
-
Ng, P.C.1
Levy, S.2
Huang, J.3
Stockwell, T.B.4
Walenz, B.P.5
Li, K.6
Axelrod, N.7
Busam, D.A.8
Strausberg, R.L.9
Venter, J.C.10
-
88
-
-
77951860138
-
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
-
Quinlan AR, Clark RA, Sokolova S, Leibowitz ML, Zhang Y, Hurles ME, Mell JC, Hall IM. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome. Genome Res 2010, 20(5):623-635.
-
(2010)
Genome Res
, vol.20
, Issue.5
, pp. 623-635
-
-
Quinlan, A.R.1
Clark, R.A.2
Sokolova, S.3
Leibowitz, M.L.4
Zhang, Y.5
Hurles, M.E.6
Mell, J.C.7
Hall, I.M.8
-
89
-
-
69749122557
-
Sensitive and accurate detection of copy number variants using read depth of coverage
-
Yoon S, Xuan Z, Makarov V, Ye K, Sebat J. Sensitive and accurate detection of copy number variants using read depth of coverage. Genome Res 2009, 19(9):1586-1592.
-
(2009)
Genome Res
, vol.19
, Issue.9
, pp. 1586-1592
-
-
Yoon, S.1
Xuan, Z.2
Makarov, V.3
Ye, K.4
Sebat, J.5
-
90
-
-
33846033395
-
AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond
-
Database
-
Hu ZL, Fritz ER, Reecy JM. AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. Nucleic Acids Res 2007, (35 Database):D604-609.
-
(2007)
Nucleic Acids Res
, Issue.35
-
-
Hu, Z.L.1
Fritz, E.R.2
Reecy, J.M.3
-
91
-
-
77951719393
-
Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing
-
Park H, Kim JI, Ju YS, Gokcumen O, Mills RE, Kim S, Lee S, Suh D, Hong D, Kang HP, et al. Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing. Nat Genet 2010, 42(5):400-405.
-
(2010)
Nat Genet
, vol.42
, Issue.5
, pp. 400-405
-
-
Park, H.1
Kim, J.I.2
Ju, Y.S.3
Gokcumen, O.4
Mills, R.E.5
Kim, S.6
Lee, S.7
Suh, D.8
Hong, D.9
Kang, H.P.10
-
92
-
-
79951849727
-
Genomic characteristics of cattle copy number variations
-
Hou Y, Liu GE, Bickhart DM, Cardone MF, Wang K, Kim ES, Matukumalli LK, Ventura M, Song J, VanRaden PM, et al. Genomic characteristics of cattle copy number variations. BMC Genomics 2011, 12:127.
-
(2011)
BMC Genomics
, vol.12
, pp. 127
-
-
Hou, Y.1
Liu, G.E.2
Bickhart, D.M.3
Cardone, M.F.4
Wang, K.5
Kim, E.S.6
Matukumalli, L.K.7
Ventura, M.8
Song, J.9
VanRaden, P.M.10
-
93
-
-
66049138940
-
Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
-
Larkin DM, Pape G, Donthu R, Auvil L, Welge M, Lewin HA. Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. Genome Res 2009, 19(5):770-777.
-
(2009)
Genome Res
, vol.19
, Issue.5
, pp. 770-777
-
-
Larkin, D.M.1
Pape, G.2
Donthu, R.3
Auvil, L.4
Welge, M.5
Lewin, H.A.6
-
94
-
-
77958188414
-
Reference-unbiased copy number variant analysis using CGH microarrays
-
Ju YS, Hong D, Kim S, Park SS, Lee S, Park H, Kim JI, Seo JS. Reference-unbiased copy number variant analysis using CGH microarrays. Nucleic Acids Res 2010, 38(20):e190.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.20
-
-
Ju, Y.S.1
Hong, D.2
Kim, S.3
Park, S.S.4
Lee, S.5
Park, H.6
Kim, J.I.7
Seo, J.S.8
-
95
-
-
77952296952
-
Towards a comprehensive structural variation map of an individual human genome
-
Pang AW, MacDonald JR, Pinto D, Wei J, Rafiq MA, Conrad DF, Park H, Hurles ME, Lee C, Venter JC, et al. Towards a comprehensive structural variation map of an individual human genome. Genome Biol 2010, 11(5):R52.
-
(2010)
Genome Biol
, vol.11
, Issue.5
-
-
Pang, A.W.1
MacDonald, J.R.2
Pinto, D.3
Wei, J.4
Rafiq, M.A.5
Conrad, D.F.6
Park, H.7
Hurles, M.E.8
Lee, C.9
Venter, J.C.10
-
96
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, et al. Real-time DNA sequencing from single polymerase molecules. Science 2009, 323(5910):133-138.
-
(2009)
Science
, vol.323
, Issue.5910
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
Peluso, P.7
Rank, D.8
Baybayan, P.9
Bettman, B.10
-
97
-
-
77952855601
-
Structural variation analysis with strobe reads
-
Ritz A, Bashir A, Raphael BJ. Structural variation analysis with strobe reads. Bioinformatics 2010, 26(10):1291-1298.
-
(2010)
Bioinformatics
, vol.26
, Issue.10
, pp. 1291-1298
-
-
Ritz, A.1
Bashir, A.2
Raphael, B.J.3
-
98
-
-
78650663859
-
Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly
-
Wong K, Keane TM, Stalker J, Adams DJ. Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly. Genome Biol 2010, 11(12):R128.
-
(2010)
Genome Biol
, vol.11
, Issue.12
-
-
Wong, K.1
Keane, T.M.2
Stalker, J.3
Adams, D.J.4
-
99
-
-
79961181124
-
Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly
-
Li Y, Zheng H, Luo R, Wu H, Zhu H, Li R, Cao H, Wu B, Huang S, Shao H, et al. Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly. Nat Biotechnol 2011, 29(8):723-730.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.8
, pp. 723-730
-
-
Li, Y.1
Zheng, H.2
Luo, R.3
Wu, H.4
Zhu, H.5
Li, R.6
Cao, H.7
Wu, B.8
Huang, S.9
Shao, H.10
-
100
-
-
70349556543
-
Personalized copy number and segmental duplication maps using next-generation sequencing
-
Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, et al. Personalized copy number and segmental duplication maps using next-generation sequencing. Nat Genet 2009, 41(10):1061-1067.
-
(2009)
Nat Genet
, vol.41
, Issue.10
, pp. 1061-1067
-
-
Alkan, C.1
Kidd, J.M.2
Marques-Bonet, T.3
Aksay, G.4
Antonacci, F.5
Hormozdiari, F.6
Kitzman, J.O.7
Baker, C.8
Malig, M.9
Mutlu, O.10
-
101
-
-
77958162485
-
The first Irish genome and ways of improving sequence accuracy
-
Ju YS, Yoo YJ, Kim JI, Seo JS. The first Irish genome and ways of improving sequence accuracy. Genome Biol 2010, 11(9):132.
-
(2010)
Genome Biol
, vol.11
, Issue.9
, pp. 132
-
-
Ju, Y.S.1
Yoo, Y.J.2
Kim, J.I.3
Seo, J.S.4
-
102
-
-
58049191440
-
A snapshot of CNVs in the pig genome
-
Fadista J, Nygaard M, Holm LE, Thomsen B, Bendixen C. A snapshot of CNVs in the pig genome. PLoS One 2008, 3(12):e3916.
-
(2008)
PLoS One
, vol.3
, Issue.12
-
-
Fadista, J.1
Nygaard, M.2
Holm, L.E.3
Thomsen, B.4
Bendixen, C.5
-
103
-
-
84855189948
-
Assembly of cow genome
-
Assembly of cow genome. , ftp://hgdownload.cse.ucsc.edu/goldenPath/bosTau4/bigZips/
-
-
-
-
104
-
-
84855205000
-
The UMD 3.1 assembly of Bos taurus
-
The UMD 3.1 assembly of Bos taurus. , ftp://ftp.cbcb.umd.edu/pub/data/assembly/Bos_taurus/Bos_taurus_UMD_3.1/
-
-
-
-
105
-
-
58149185123
-
Ensembl 2009
-
Database
-
Hubbard TJ, Aken BL, Ayling S, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Clarke L, et al. Ensembl 2009. Nucleic Acids Res 2009, (37 Database):D690-697.
-
(2009)
Nucleic Acids Res
, Issue.37
-
-
Hubbard, T.J.1
Aken, B.L.2
Ayling, S.3
Ballester, B.4
Beal, K.5
Bragin, E.6
Brent, S.7
Chen, Y.8
Clapham, P.9
Clarke, L.10
-
106
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003, 4(5):P3.
-
(2003)
Genome Biol
, vol.4
, Issue.5
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
107
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26(6):841-842.
-
(2010)
Bioinformatics
, vol.26
, Issue.6
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
108
-
-
78651320424
-
The UCSC Genome Browser database: update 2011
-
Database
-
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, Cline MS, Goldman M, Barber GP, Clawson H, Coelho A, et al. The UCSC Genome Browser database: update 2011. Nucleic Acids Res 2011, (39 Database):D876-882.
-
(2011)
Nucleic Acids Res
, Issue.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
Cline, M.S.6
Goldman, M.7
Barber, G.P.8
Clawson, H.9
Coelho, A.10
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