Structurally selective imaging mass spectrometry by imaging ion mobility-mass spectrometry

Methods in Molecular Biology

Volumn 656, Issue , 2010, Pages 363-383

  McLean, John A ^a   Fenn, Larissa S ^a   Enders, Jeffrey R ^a  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

IM MS; IM MS MS; imaging ion mobility mass spectrometry; imaging mass spectrometry; IMS; Ion mobility; ion mobility mass spectrometry; MALDI; MSI; structural separations

Indexed keywords

ION; LIPID; PEPTIDE; PROTEIN;

ARTICLE; CHEMISTRY; DIAGNOSTIC IMAGING; MASS SPECTROMETRY; METHODOLOGY; TANDEM MASS SPECTROMETRY;

DIAGNOSTIC IMAGING; IONS; LIPIDS; MASS SPECTROMETRY; PEPTIDES; PROTEINS; TANDEM MASS SPECTROMETRY;

EID: 81055146017     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60761-746-4_21     Document Type: Article

References (62)

1. Fenn, L. S., McLean, J. A. (2008) Biomolecular structural separations by ion mobilitymass spectrometry. Anal Bioanal Chem, 391, 905-909.
2. McLean, J. A., Ruotolo, B. T., Gillig, K. J., Russell, D. H. (2005) Ion mobilitymass spectrometry: A new paradigm for proteomics. Int J Mass Spectrom, 240, 301-315.
3. Wyttenbach, T., Bowers, M. T. (2003) Gasphase conformations: The ion mobility/ion chromatography method. Modern Mass Spectrom, 225, 207-232.
4. Jarrold, M. F. (2000) Peptides and proteins in the vapor phase, Annu Rev Phys Chem, 51, 179-207.
5. Clemmer, D. E. Jarrold, M. Fd. (1997) Ion mobility measurements and their applications to clusters and biomolecules. J Mass Spectrom, 32, 577-592.
6. Eiceman, E. A., Karpas, Z. (2004) Ion Mobility Spectrometry, 2nd Ed., CRC Press, Boca Raton, FL, Chapter 1.
7. McAfee, K. B., Jr., Edelson, D. (1963) Identification and mobility of ions in a townsend discharge by time-resolved mass spectrometry, Proc Phys Soc Lond, 81, 382-384.
8. Barnes, W. S., Martin, D. W., McDaniel, E. W. (1961) Mass spectrographic identification of the ion observed in hydrogen mobility experiments, Phys Rev Lett, 6, 110-111.
9. Gieniec, J., Mack, L. L., Nakamae, K., Gupta, C., Kumar, V., Dole, M. (1984) Electrospray mass spectroscopy of macromolecules: Application of an ion-drift spectrometer. Biomed Mass Spectrom, 11, 259-268.
10. Von Helden, G., Wyttenbach, T., Bowers, M. T. (1995) Inclusion of a MALDI ion source in the ion chromatography technique: Conformation information on polymer and biomolecular ions. Int J Mass Spectrom Ion Process, 146/147, 349-364.
11. Shelimov, K. B., Clemmer, D. E., Hudgins, R. R., Jarrold, M. F. (1997) Protein structure in vacuo: The gas phase conformations of BPTI and cytochrome c, J Am Chem Soc, 119, 2240-2248.
12. Wyttenbach, T., Von Helden, G., Bowers, M. T. (1996) Gas-phase conformation of biological molecules: Bradykinin. J Am Chem Soc, 118, 8355-8364.
13. Von Helden, G., Wyttenbach, T., Bowers, M. T. (1995) Conformation of macromolecules in the gas phase: Use of matrix-assisted laser desorption methods in ion chromatography. Science, 267, 1483-1485.
14. Myung, S., Lee, Y. J., Moon, M. H., Taraszka, J., Sowell, R., Koeniger, S., Hilderbrand, A. E., Valentine, S. J., Cherbas, L., Cherbas, P., Kaufmann, T. C., Miller, D. F., Mechref, Y., Novotny, M. V., Ewing, M. A., Sporleder C. R., Clemmer, D. E. (2003) Development of high-sensitivity ion trap ion mobility spectrometry time-of-flight techniques: A high-throughput nano-LC-IMSTOF separation of peptides arising from a Drosophila protein extract. Anal Chem, 75, 5137-5145.
15. Isailovic, D., Kurulugama, R. T., Plasencia, M. D., Stokes, S. T., Kyselova, Z., Goldman, R., Mechref, Y., Novotny, M. V. and Clemmer, D. E. (2008) Profiling of human serum glycans associated with liver cancer and cirrhosis by IMS-MS. J Proteome Res, 7, 1109-1117.
16. Liu, X., Valentine, S. J., Plasencia, M. D., Trimpin, S., Naylor, S., Clemmer, D. E. (2007) Mapping the human plasma proteome by SCX-LC-IMS-MS. J Am Soc Mass Spectrom, 18, 1249-1264.
17. Valentine, S. J., Plasencia, M. D., Liu, X., Krishnan, M., Naylor, S., Udseth, H. R., Smith, R. D., Clemmer, D. E. (2006) Toward plasma proteome profiling with ion mobility-mass spectrometry. J Proteome Res, 5, 2977-2984.
18. Liu, X., Plasencia, M., Ragg, S., Valentine, S. J., Clemmer, D. E. (2004) Development of high throughput dispersive LC-ion mobility-TOFMS techniques for analysing the human plasma proteome. Brief Funct Genomic Proteomic, 3, 177-186.
19. Liu, X.,Miller, B. R., Rebec, G. V., Clemmer, D. E. (2007) Protein expression in the striatum and cortex regions of the brain for a mouse model of Huntington's disease.J Proteome Res, 6, 3134-3142.
20. Taraszka, J. A., Kurulugama, R., Sowell, R. A., Valentine, S. J., Koeniger, S. L., Arnold, R. J., Miller, D. F., Kaufman, T. C., Clemmer, D. E. (2005) Mapping the proteome of Drosophila melanogaster: Analysis of embryos and adult heads by LC-IMS-MS methods. J Proteome Res, 4, 1223-1237.
21. Benesch, J. L. P., Ruotolo, B. T., Simmons, D. A., Robinson, C. V. (2007) Protein complexes in the gas phase: Technology for the structural genomics and proteomics. Chem Rev, 107, 3544-3567.
22. Ruotolo, B. T., Hyung, S.-J., Robinson, P. M., Giles, K., Bateman, R. H., Robinson, C. V. (2007) Ion mobility-mass spectrometry reveals long-lived, unfolded intermediates in the dissociation of protein complexes. Angew Chem Int Ed, 46, 8001-8004.
23. Ruotolo, B. T., Giles, K., Campuzano, I., Sandercock, A. M., Bateman, R. H., Robinson, C. V. (2005) Evidence for macromolecular rings in the absence of bulk water. Science, 310, 1658-1661.
24. Jackson, S. N., Ugarov, M., Egan, T., Post, J. D., Langlais, D., Schultz, J. A., Woods, A. S. (2007) MALDI-ion mobility-TOFMS imaging of lipids in rat brain tissue. J Mass Spectrom, 42, 1093-1098.
25. McLean, J. A., Ridenour, W. B., Caprioli, R. M. (2007) Profiling and imaging of tissues by imaging ion mobility-mass spectrometry. J Mass Spectrom, 42, 1099-1105.
26. Mason, E. A., McDaniel, E. W. (1988) Transport Properties of Ions in Gases. John Wiley & Sons, New York, NY.
27. Mason, E. A. (1984) Ion mobility: Its role in plasma chromatography, in Plasma Chromatography, (Carr, T. W. ed.), PlenumPress, New York, NY, 43-93.
28. Revercomb, H. E. and Mason, E. A. (1975) Theory of plasma chromatography/gaseous electrophoresis - a review. Anal Chem, 47, 970-983.
29. Ruotolo, B. T., Benesch, J. L. P., Sandercock, A. M., Hyung, S.-J. Robinson, C. V. (2008) Ion mobility-mass spectrometry analysis of large protein complexes. Nat Protoc, 3, 1139-1152.
30. Williams, J. P., Scrivens, J. H. (2008) Coupling desorption electrospray ionization and neutral desorption/extractive electrospray ionization with a travelling-wave based ion mobility mass spectrometer for the analysis of drugs. Rapid Commun Mass Spectrom, 22, 187-196.
31. Gidden, J., Bowers, M. T. (2003) Gas-phase conformations of deprotonated and protonated mononucleotides determined by ion mobility and theoretical modeling. J Phys Chem B, 107, 12829-12837.
32. Gidden, J., Bowers, M. T. (2003) Gasphase conformations of deprotonated trinucleotides (dGTT(-), dTGT(-), and dTTG (-)): The question of zwitterion formation. J Am Soc Mass Spectrom, 14, 161-170.
33. Wyttenbach, T., Witt, M., Bowers, M. T. (2000) On the stability of amino acid zwitterions in the gas phase: The influence of derivatization, proton affinity, and alkali ion addition. J Am Chem Soc, 122, 3458-3464.
34. Shvartsburg, A. A., Jarrold, M. F. (1996) An exact hard-spheres scattering model for the mobilities of polyatomic ions. Chem Phys Lett, 261, 86-91.
35. Dwivedi, P., Wu, P., Klopsch, S. J., Puzon, G. J., Xun, L., Hill, H. H. (2008) Metabolic profiling by ion mobility mass spectrometry (IMMS). Metabolomics, 4, 63-80.
36. Tao, L., McLean, J. R., McLean, J. A., Russell, D. H. (2007) A collision crosssection database of singly-charged peptide ions. J Am Soc Mass Spectrom, 18, 1232-1238.
37. Ruotolo, B. T., Verbeck, G. F., Thomson, L. M., Woods, A. S., Gillig, K. J., Russell, D. H. (2002) Distinguishing between phosphorylated and nonphosphorylated peptides with ion mobility-mass spectrometry. J Proteome Res, 1, 303-306.
38. Furche, F., Ahlrichs, R., Weis, P., Jacob, C., Gilb, S., Bierweiler, T., Kappes, M. M. (2002) The structures of small gold cluster anions as determined by a combination of ion mobility measurements and density functional calculations. J Chem Phys, 117, 6982-6990.
39. Shvartsburg, A. A., Smith, R. D. (2008) Fundamentals of traveling wave ion mobility spectrometry. Anal Chem, 80, 9689-9699.
40. Mason, E. A., McDaniel, E. W. (1988) Measurement of drift velocities and longitudinal diffusion coefficients, in Transport Properties of Ions in Gases, John Wiley & Sons, New York, NY, 31-102.
41. Kanu, A. B., Dwivedi, P., Tam, M., Matz, L., Hill, H. H., Jr. (2008) Ion mobility-mass spectrometry, J Mass Spectrom, 43, 1-22.
42. Steiner, W. E., Clowers, B. H., English, W. A., Hill, H. H., Jr. (2004) Atmospheric pressure matrix-assisted laser desorption/ ionization with analysis by ion mobilitymass spectrometry. Rapid Commun Mass Spectrom, 18, 882-888.
43. McLean, J. A., Russell, D. H. (2003) Subfemtomole peptide detection in ion-mobilitytime- of-flight mass spectrometry measurements. J Proteome Res, 2, 427-430.
44. McLean, J. A., Ridenour, W. B., Caprioli, R. M. (2007) Imaging ion mobility mass spectrometry: Advantages, challenges, and future prospects. Proceedings of the 55th Annual Meeting of the American Society for Mass Spectrometry, Indianapolis, IN.
45. Merenbloom, S. I., Glaskin, R. S., Clemmer, D. E. (2009) High resolution ion cyclotron mobility spectrometry. Anal Chem, 81, 1482-1487.
46. Wyttenbach, T., Kemper, P. R., Bowers, M. T. (2001) Design of a new electrospray ion mobility mass spectrometer. Int J Mass Spectrom, 212, 13-23.
47. Dugourd, Ph., Hudgins, R. R., Clemmer, D. E., Jarrold,M. F. (1997) High-resolution ion mobility measurements. Rev Sci Instrum, 68, 1122-1129.
48. Giles, K., Pringle, S. D., Worthington, D. L., Wildgoose, J. L., Bateman, R. H. (2004) Applications of travelling wave-based radiofrequency- only stacked ring ion guide. Rapid Commun Mass Spectrom, 18, 2401-2414.
49. Pringle, S. D., Giles, K., Wildgoose, J. L., Williams, J. P., Slade, S. E., Thalassinos, K., Bateman, R. H., Bowers, M. T., Scrivens, J. H. (2007) An investigation of the mobility separation of some peptide and protein ions using a new hybrid quadrupole/travelling wave IMS/oa-ToF instrument. Int J Mass Spectrom, 261, 1-12.
50. Vakhrushev, S. Y., Langridge, J., Campuzano, I., Hughes, C., Peter-Katalinic, J. (2008) Ion mobility mass spectrometry analysis of human glycourinome. Anal Chem, 80, 2506-2513.
51. Riba-Garcia, I., Giles, K., Bateman, R.H., Gaskell, S.J. (2008) Evidence for structural variants of a- and b- type peptide fragment ions using combined ion mobility/mass spectrometry. J Am Soc Mass Spectrom, 19, 609-613.
52. Trim, P. J., Henson, C. M., Avery, J. L., McEwen, A., Snel, M. F., Claude, E., Marshall, P. S., West, A., Princivalle, A. P., Clench, M. R. (2008) Matrix-assisted laser desorption/ionization-ion mobility separation-mass spectrometry imaging of vinblastine in whole body tissue sections. Anal Chem, 80, 8628-8634.
53. Reyzer, M. L., Hsieh, Y., Ng, K., Korfmacher, W .A., Caprioli, R. M. (2003) Direct analysis of drug candidates in tissue by matrix-assisted laser desorption/ionization mass spectrometry. J Mass Spectrom, 38, 1081-1092.
54. Domon, B., Costello, C. E. (1988) A systematic nomenclature for carbohydrate fragmentations in FAB-MS/MS spectra of glycoconjugates. Glycoconjugate J, 5, 397-409.
55. Karas, M., Hillenkamp, F. (1988) Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem, 60, 2299-2301.
56. Henderson, S. C., Valentine, S. J., Counterman, A. E., Clemmer, D. E. (1999) ESI/ion trap/ion mobility/timeof- flight mass spectrometry for rapid and sensitive analysis of biomolecular mixtures. Anal Chem, 71, 291-301.
57. Hoaglund, C. S., Valentine, S. J., Sporleder, C. R., Reilly, J. P., Clemmer, D. E. (1998) Three-dimensional ion mobility/TOFMS analysis of electrosprayed biomolecules. Anal Chem, 70, 2236-2242.
58. Clemmer cross section database (2006) (Assessed January 28th, 2009 at http:// www.indiana.edu/clemmer/Research/cross section database/cs database.htm)
59. Fenn, L. S., Kliman, M., Mahsutt, A., Zhao, S. R., McLean, J. A. (2009) Characterizing ion mobility-mass spectrometry conformation space for the analysis of complex biological samples. Anal Bioanal Chem, 394, 235-244.
60. Theories and analysis of IM-MS data (Assessed January 28th, 2009 at http:// bowers.chem.ucsb.edu/theory-analysis/index. shtml).
61. Wyttenbach, T., von Helden, G., Batka, J. J., Jr., Carlat, D., Bowers, M. T. (1997) Effect of the long-range interaction potential on ion mobility measurements. J Am Soc Mass Spectrom, 8, 275-282.
62. Mesleh, M. F., Hunter, J. M., Shvartsburg, A. A., Schatz, G. C., Jarrold, M. F. (1996) Structural information from ion mobility measurements: Effects of the long-range potential. J Phys Chem, 100, 16082-16086.