-
1
-
-
0035895505
-
The sequence of the human genome
-
DOI 10.1126/science.1058040
-
Venter JC, Adams MD Myers E, et al. The sequence of the human genome. Science 291, 1304-1351 (2001). (Pubitemid 32173090)
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1304-1351
-
-
Craig Venter, J.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Gabor Miklos, G.L.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
Levine, A.J.31
Roberts, R.J.32
Simon, M.33
Slayman, C.34
Hunkapiller, M.35
Bolanos, R.36
Delcher, A.37
Dew, I.38
Fasulo, D.39
Flanigan, M.40
Florea, L.41
Halpern, A.42
Hannenhalli, S.43
Kravitz, S.44
Levy, S.45
Mobarry, C.46
Reinert, K.47
Remington, K.48
Abu-Threideh, J.49
Beasley, E.50
Biddick, K.51
Bonazzi, V.52
Brandon, R.53
Cargill, M.54
Chandramouliswaran, I.55
Charlab, R.56
Chaturvedi, K.57
Deng, Z.58
Di Francesco, V.59
Dunn, P.60
Eilbeck, K.61
Evangelista, C.62
Gabrielian, A.E.63
Gan, W.64
Ge, W.65
Gong, F.66
Gu, Z.67
Guan, P.68
Heiman, T.J.69
Higgins, M.E.70
Ji, R.-R.71
Ke, Z.72
Ketchum, K.A.73
Lai, Z.74
Lei, Y.75
Li, Z.76
Li, J.77
Liang, Y.78
Lin, X.79
Lu, F.80
Merkulov, G.V.81
Milshina, N.82
Moore, H.M.83
Naik, A.K.84
Narayan, V.A.85
Neelam, B.86
Nusskern, D.87
Rusch, D.B.88
Salzberg, S.89
Shao, W.90
Shue, B.91
Sun, J.92
Zhen Yuan Wang93
Wang, A.94
Wang, X.95
Wang, J.96
Wei, M.-H.97
Wides, R.98
Xiao, C.99
more..
-
2
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
DOI 10.1038/35057062
-
Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001). (Pubitemid 32165345)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
Levine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
more..
-
3
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470 (1995).
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
4
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
DOI 10.1038/nmeth.1223, PII NMETH.1223
-
Cloonan N, Forrest ARR, Kolle G, et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Meth. 5, 613-619 (2008). (Pubitemid 351911866)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.R.2
Kolle, G.3
Gardiner, B.B.A.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
Robertson, A.J.11
Perkins, A.C.12
Bruce, S.J.13
Lee, C.C.14
Ranade, S.S.15
Peckham, H.E.16
Manning, J.M.17
McKernan, K.J.18
Grimmond, S.M.19
-
5
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
DOI 10.1126/science.1158441
-
Nagalakshmi U, Wang Z, Waern K, et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344-1349 (2008). (Pubitemid 351929471)
-
(2008)
Science
, vol.320
, Issue.5881
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
6
-
-
77952577869
-
Recent advances in DNA sequencing methods - General principles of sample preparation
-
Linnarsson S. Recent advances in DNA sequencing methods - general principles of sample preparation. Exp. Cell Res. 316, 1339-1343 (2010).
-
(2010)
Exp. Cell Res.
, vol.316
, pp. 1339-1343
-
-
Linnarsson, S.1
-
7
-
-
34250877841
-
A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing
-
DOI 10.1016/j.cell.2007.04.040, PII S0092867407006046
-
Landgraf P, Rusu M, Sheridan R, et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129, 1401-1414 (2007). (Pubitemid 46970709)
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
Aravin, A.6
Pfeffer, S.7
Rice, A.8
Kamphorst, A.O.9
Landthaler, M.10
Lin, C.11
Socci, N.D.12
Hermida, L.13
Fulci, V.14
Chiaretti, S.15
Foa, R.16
Schliwka, J.17
Fuchs, U.18
Novosel, A.19
Muller, R.-U.20
Schermer, B.21
Bissels, U.22
Inman, J.23
Phan, Q.24
Chien, M.25
Weir, D.B.26
Choksi, R.27
De Vita, G.28
Frezzetti, D.29
Trompeter, H.-I.30
Hornung, V.31
Teng, G.32
Hartmann, G.33
Palkovits, M.34
Di Lauro, R.35
Wernet, P.36
Macino, G.37
Rogler, C.E.38
Nagle, J.W.39
Ju, J.40
Papavasiliou, F.N.41
Benzing, T.42
Lichter, P.43
Tam, W.44
Brownstein, M.J.45
Bosio, A.46
Borkhardt, A.47
Russo, J.J.48
Sander, C.49
Zavolan, M.50
Tuschl, T.51
more..
-
8
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotech. 28, 511-515 (2010).
-
(2010)
Nat. Biotech.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
-
9
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
DOI 10.1073/pnas.0608638104
-
Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl Acad. Sci. USA 104, 5860-5865 (2007). (Pubitemid 47175624)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.14
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
10
-
-
0014013696
-
A membrane-filter technique for the detection of complementary DNA
-
Denhardt DT. A membrane-filter technique for the detection of complementary DNA. Biochem. Biophys. Res. Commun. 23, 641-646 (1966).
-
(1966)
Biochem. Biophys. Res. Commun.
, vol.23
, pp. 641-646
-
-
Denhardt, D.T.1
-
11
-
-
0016700864
-
Detection of specific sequences among DNA fragments separated by gel electrophoresis
-
Southern EM. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98, 503-517 (1975).
-
(1975)
J. Mol. Biol.
, vol.98
, pp. 503-517
-
-
Southern, E.M.1
-
12
-
-
0017643426
-
RNA molecular weight determinations by gel electrophoresis under denaturing conditions, a critical reexamination
-
DOI 10.1021/bi00640a033
-
Lehrach H, Diamond D, Wozney JM, Boedtker H. RNA molecular weight determinations by gel electrophoresis under denaturing conditions, a critical reexamination. Biochemistry 16, 4743-4751 (1977). (Pubitemid 8205616)
-
(1977)
Biochemistry
, vol.16
, Issue.21
, pp. 4743-4751
-
-
Lehrach, H.1
Diamond, D.2
Wozney, J.M.3
Boedtker, H.4
-
13
-
-
0017690216
-
Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes
-
Alwine JC, Kemp DJ, Stark GR. Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. Proc. Natl Acad. Sci. USA 74, 5350-5354 (1977).
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 5350-5354
-
-
Alwine, J.C.1
Kemp, D.J.2
Stark, G.R.3
-
14
-
-
0027203343
-
Improved resolution and sensitivity of northern blots using polyacrylamide-urea gels
-
Stoeckle MY, Guan L. Improved resolution and sensitivity of northern blots using polyacrylamide-urea gels. Biotechniques 15, 227, 230-231 (1993).
-
(1993)
Biotechniques
, vol.15
, Issue.227
, pp. 230-231
-
-
Stoeckle, M.Y.1
Guan, L.2
-
16
-
-
0026516892
-
One-hour downward alkaline capillary transfer for blotting of DNA and RNA
-
Chomczynski P. One-hour downward alkaline capillary transfer for blotting of DNA and RNA. Anal. Biochem. 201, 134-139 (1992).
-
(1992)
Anal. Biochem.
, vol.201
, pp. 134-139
-
-
Chomczynski, P.1
-
17
-
-
0020071534
-
Cloning and screening of sequences expressed in a mouse colon tumor
-
Augenlicht LH, Kobrin D. Cloning and screening of sequences expressed in a mouse colon tumor. Cancer Res. 42, 1088-1093 (1982). (Pubitemid 12141224)
-
(1982)
Cancer Research
, vol.42
, Issue.3
, pp. 1088-1093
-
-
Augenlicht, L.H.1
Kobrin, D.2
-
18
-
-
0023474254
-
Identification of interferon-modulated proliferation-related cDNA sequences
-
Kulesh DA, Clive DR, Zarlenga DS, Greene JJ. Identification of interferon-modulated proliferation-related cDNA sequences. Proc. Natl Acad. Sci. USA 84, 8453-8457 (1987).
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 8453-8457
-
-
Kulesh, D.A.1
Clive, D.R.2
Zarlenga, D.S.3
Greene, J.J.4
-
19
-
-
0029812283
-
A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
-
Shalon D, Smith SJ, Brown PO. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res. 6, 639-645 (1996). (Pubitemid 26275868)
-
(1996)
Genome Research
, vol.6
, Issue.7
, pp. 639-645
-
-
Shalon, D.1
Smith, S.J.2
Brown, P.O.3
-
20
-
-
0031442518
-
Characterization of the yeast transcriptome
-
DOI 10.1016/S0092-8674(00)81845-0
-
Velculescu VE, Zhang L, Zhou W, et al. Characterization of the yeast transcriptome. Cell 88, 243-251 (1997). (Pubitemid 28015873)
-
(1997)
Cell
, vol.88
, Issue.2
, pp. 243-251
-
-
Velculescu, V.E.1
Zhang, L.2
Zhou, W.3
Vogelstein, J.4
Basrai, M.A.5
Bassett Jr., D.E.6
Hieter, P.7
Vogelstein, B.8
Kinzler, K.W.9
-
21
-
-
61449237172
-
Quantitative interaction proteomics using mass spectrometry
-
Wepf A, Glatter T, Schmidt A, Aebersold R, Gstaiger M. Quantitative interaction proteomics using mass spectrometry. Nat. Methods 6, 203-205 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 203-205
-
-
Wepf, A.1
Glatter, T.2
Schmidt, A.3
Aebersold, R.4
Gstaiger, M.5
-
22
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz A, Choi H, Sharom JR, et al. A global protein kinase and phosphatase interaction network in yeast. Science 328, 1043-1046 (2010).
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
-
23
-
-
70849132924
-
Proteome organization in a genomereduced bacterium
-
Kühner S, van Noort V, Betts MJ, et al. Proteome organization in a genomereduced bacterium. Science 326 1235-1240 (2009).
-
(2009)
Science
, vol.326
, pp. 1235-1240
-
-
Kühner, S.1
Van Noort, V.2
Betts, M.J.3
-
24
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy LMF, Olsen JV, Cox J, et al. Comprehensive mass-spectrometry- based proteome quantification of haploid versus diploid yeast. Nature 455 1251-1254 (2008).
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
De Godoy Lmf1
Olsen, J.V.2
Cox, J.3
-
25
-
-
65949096636
-
Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes
-
Schrimpf SP, Weiss M, Reiter L, et al. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. PLoS Biol. 7, e1000048 (2009).
-
(2009)
PLoS Biol.
, vol.7
-
-
Schrimpf, S.P.1
Weiss, M.2
Reiter, L.3
-
26
-
-
44249091879
-
Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics
-
DOI 10.1126/science.1157956
-
Baerenfaller K, Grossmann J, Grobei MA, et al. Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science 320, 938-941 (2008). (Pubitemid 351929590)
-
(2008)
Science
, vol.320
, Issue.5878
, pp. 938-941
-
-
Baerenfaller, K.1
Grossmann, J.2
Grobei, M.A.3
Hull, R.4
Hirsch-Hoffmann, M.5
Yalovsky, S.6
Zimmermann, P.7
Grossniklaus, U.8
Gruissem, W.9
Baginsky, S.10
-
28
-
-
0142215475
-
Global analysis of protein expression in yeast
-
DOI 10.1038/nature02046
-
Ghaemmaghami S, Huh W, Bower K, et al. Global analysis of protein expression in yeast. Nature 425, 737-741 (2003). (Pubitemid 37314318)
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.-K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
29
-
-
0016711037
-
High resolution twodimensional electrophoresis of proteins
-
OFarrell PH. High resolution twodimensional electrophoresis of proteins. J. Biol. Chem. 250, 4007-4021 (1975).
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 4007-4021
-
-
Ofarrell, P.H.1
-
30
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
Gygi SP, Corthals GL, Zhang Y, Rochon Y, Aebersold R. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Natl Acad. Sci. USA 97, 9390-9395 (2000). (Pubitemid 30650785)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.17
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
Rochon, Y.4
Aebersold, R.5
-
31
-
-
13844271208
-
Protein identification using 2D-LC-MS/MS
-
DOI 10.1016/j.ymeth.2004.08.016
-
Delahunty C, Yates III JR. Protein identification using 2D-LC-MS/MS. Methods 35, 248-255 (2005). (Pubitemid 40255590)
-
(2005)
Methods
, vol.35
, Issue.3 SPEC.ISS.
, pp. 248-255
-
-
Delahunty, C.1
Yates III, J.R.2
-
32
-
-
0021890952
-
Automated tandem high-performance liquid chromatographic system for separation of extremely complex peptide mixtures
-
Takahashi N, Ishioka N, Takahashi Y, Putnam FW. Automated tandem highperformance liquid chromatographic system for separation of extremely complex peptide mixtures. J. Chromatogr. 326, 407-418 (1985). (Pubitemid 15069387)
-
(1985)
Journal of Chromatography
, vol.VOL. 326
, pp. 407-418
-
-
Takahashi, N.1
Ishioka, N.2
Takahashi, Y.3
Putnam, F.W.4
-
33
-
-
0026745055
-
Two-dimensional liquid chromatography of peptides: An optimization strategy
-
Lundell N, Markides K. Two-dimensional liquid chromatography of peptides: an optimization strategy. Chromatographia 34, 369-375 (1992).
-
(1992)
Chromatographia
, vol.34
, pp. 369-375
-
-
Lundell, N.1
Markides, K.2
-
34
-
-
0032190378
-
Protein identification at the low femtomole level from silver-stained gels using a new fritless electrospray interface for liquid chromatography- microspray and nanospray mass spectrometry
-
DOI 10.1006/abio.1998.2809
-
Gatlin CL, Kleemann GR, Hays LG, Link AJ, Yates JR. Protein identification at the low femtomole level from silver-stained gels using a new fritless electrospray interface for liquid chromatography-microspray and nanospray mass spectrometry. Anal. Biochem. 263, 93-101 (1998). (Pubitemid 28445431)
-
(1998)
Analytical Biochemistry
, vol.263
, Issue.1
, pp. 93-101
-
-
Gatlin, C.L.1
Kleemann, G.R.2
Hays, L.G.3
Link, A.J.4
Yates III, J.R.5
-
35
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
DOI 10.1038/13690
-
Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999 (1999). (Pubitemid 29474856)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
36
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using aminereactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN, et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using aminereactive isobaric tagging reagents. Mol. Cell. Proteomics 3, 1154-1169 (2004).
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
-
37
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong S, Blagoev B, Kratchmarova I, et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386 (2002).
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.1
Blagoev, B.2
Kratchmarova, I.3
-
38
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
DOI 10.1073/pnas.96.12.6591
-
Oda Y, Huang K, Cross FR, Cowburn D, Chait BT. Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl Acad. Sci. USA 96, 6591-6596 (1999). (Pubitemid 29274927)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.12
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
39
-
-
26844576371
-
Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules
-
DOI 10.1074/mcp.M500089-MCP200
-
Zhang Y, Wolf-Yadlin A, Ross PL, et al. Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Mol. Cell. Proteomics 4, 1240-1250 (2005). (Pubitemid 41448712)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.9
, pp. 1240-1250
-
-
Zhang, Y.1
Wolf-Yadlin, A.2
Ross, P.L.3
Pappin, D.J.4
Rush, J.5
Lauffenburger, D.A.6
White, F.M.7
-
40
-
-
3543121341
-
Quantification in proteomics through stable isotope coding: A review
-
DOI 10.1021/pr0340734
-
Julka S, Regnier F. Quantification in proteomics through stable isotope coding: a review. J. Proteome Res. 3, 350-363 (2004). (Pubitemid 39207339)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.3
, pp. 350-363
-
-
Julka, S.1
Regnier, F.2
-
41
-
-
70449412362
-
ITRAQ Underestimation in simple and complex mixtures: "The good, the bad and the ugly"
-
Ow SY, Salim M, Noirel J, Evans C, Rehman I, Wright PC. iTRAQ Underestimation in simple and complex mixtures: "the good, the bad and the ugly". J. Proteome Res. 8, 5347-5355 (2009).
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5347-5355
-
-
Ow, S.Y.1
Salim, M.2
Noirel, J.3
Evans, C.4
Rehman, I.5
Wright, P.C.6
-
42
-
-
18344390418
-
ERBB receptors and cancer: The complexity of targeted inhibitors
-
DOI 10.1038/nrc1609
-
Hynes NE, Lane HA. ERBB receptors and cancer: the complexity of targeted inhibitors. Nat. Rev. Cancer 5, 341-354 (2005). (Pubitemid 40637826)
-
(2005)
Nature Reviews Cancer
, vol.5
, Issue.5
, pp. 341-354
-
-
Hynes, N.E.1
Lane, H.A.2
-
44
-
-
33745828702
-
EGF-ERBB signalling: Towards the systems level
-
DOI 10.1038/nrm1962, PII NRM1962
-
Citri A, Yarden Y. EGF-ERBB signalling: towards the systems level. Nat. Rev. Mol. Cell. Biol. 7, 505-516 (2006). (Pubitemid 44036456)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.7
, pp. 505-516
-
-
Citri, A.1
Yarden, Y.2
-
45
-
-
77953896432
-
Cell signaling by receptor tyrosine kinases
-
Lemmon MA, Schlessinger J. Cell signaling by receptor tyrosine kinases. Cell 141, 1117-1134 (2010).
-
(2010)
Cell
, vol.141
, pp. 1117-1134
-
-
Lemmon, M.A.1
Schlessinger, J.2
-
46
-
-
0037429737
-
Epidermal growth factor receptor: Mechanisms of activation and signalling
-
DOI 10.1016/S0014-4827(02)00098-8
-
Jorissen RN, Walker F, Pouliot N, Garrett TPJ, Ward CW, Burgess AW. Epidermal growth factor receptor: mechanisms of activation and signalling. Exp. Cell. Res. 284, 31-53 (2003). (Pubitemid 36331965)
-
(2003)
Experimental Cell Research
, vol.284
, Issue.1
, pp. 31-53
-
-
Jorissen, R.N.1
Walker, F.2
Pouliot, N.3
Garrett, T.P.J.4
Ward, C.W.5
Burgess, A.W.6
-
47
-
-
63749086305
-
ErbB receptors and signaling pathways in cancer
-
Hynes NE, MacDonald G. ErbB receptors and signaling pathways in cancer. Curr. Opin. Cell Biol. 21, 177-184 (2009).
-
(2009)
Curr. Opin. Cell Biol.
, vol.21
, pp. 177-184
-
-
Hynes, N.E.1
MacDonald, G.2
-
48
-
-
0036898579
-
Protein microarrays and proteomics
-
MacBeath G. Protein microarrays and proteomics. Nat. Genet. 32(Suppl.), 526-532 (2002). (Pubitemid 35435157)
-
(2002)
Nature Genetics
, vol.32
, Issue.5 SUPPL. DEC.
, pp. 526-532
-
-
MacBeath, G.1
-
49
-
-
10744221765
-
Protein microarrays: Meeting analytical challenges for clinical applications
-
DOI 10.1016/S1535-6108(03)00086-2, PII S1535610803000862
-
Liotta LA, Espina V, Mehta AI, et al. Protein microarrays: meeting analytical challenges for clinical applications. Cancer Cell 3, 317-325 (2003). (Pubitemid 38340301)
-
(2003)
Cancer Cell
, vol.3
, Issue.4
, pp. 317-325
-
-
Liotta, L.A.1
Espina, V.2
Mehta, A.I.3
Calvert, V.4
Rosenblatt, K.5
Geho, D.6
Munson, P.J.7
Young, L.8
Wulfkuhle, J.9
Petricoin III, E.F.10
-
50
-
-
1642463417
-
Analysis of protein phosphorylation and cellular signaling events by flow cytometry: Techniques and clinical applications
-
DOI 10.1016/j.clim.2003.11.009, PII S1521661603003097
-
Krutzik PO, Irish JM, Nolan GP, Perez OD. Analysis of protein phosphorylation and cellular signaling events by flow cytometry: techniques and clinical applications. Clin. Immunol. 110, 206-221 (2004). (Pubitemid 38402001)
-
(2004)
Clinical Immunology
, vol.110
, Issue.3
, pp. 206-221
-
-
Krutzik, P.O.1
Irish, J.M.2
Nolan, G.P.3
Perez, O.D.4
-
51
-
-
0346244001
-
Intracellular phospho-protein staining techniques for flow cytometry: Monitoring single cell signaling events
-
Krutzik PO, Nolan GP. Intracellular phospho-protein staining techniques for flow cytometry: monitoring single cell signaling events. Cytometry 55A, 61-70 (2003). (Pubitemid 37522508)
-
(2003)
Cytometry Part A
, vol.55
, Issue.2
, pp. 61-70
-
-
Krutzik, P.O.1
Nolan, G.P.2
-
52
-
-
0036173143
-
Simultaneous measurement of multiple active kinase states using polychromatic flow cytometry
-
DOI 10.1038/nbt0202-155
-
Perez OD, Nolan GP. Simultaneous measurement of multiple active kinase states using polychromatic flow cytometry. Nat. Biotechnol. 20, 155-162 (2002). (Pubitemid 34158031)
-
(2002)
Nature Biotechnology
, vol.20
, Issue.2
, pp. 155-162
-
-
Perez, O.D.1
Nolan, G.P.2
-
53
-
-
0035221240
-
Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
-
RESEARCH0004
-
Haab BB, Dunham MJ, Brown PO. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2, RESEARCH0004 (2001).
-
(2001)
Genome Biol.
, vol.2
-
-
Haab, B.B.1
Dunham, M.J.2
Brown, P.O.3
-
54
-
-
0042925411
-
Profiling receptor tyrosine kinase activation by using Ab microarrays
-
DOI 10.1073/pnas.1633513100
-
Nielsen UB, Cardone MH, Sinskey AJ, MacBeath G, Sorger PK. Profiling receptor tyrosine kinase activation by using Ab microarrays. Proc. Natl Acad. Sci. USA 100, 9330-9335 (2003). (Pubitemid 37033928)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.16
, pp. 9330-9335
-
-
Nielsen, U.B.1
Cardone, M.H.2
Sinskey, A.J.3
MacBeath, G.4
Sorger, P.K.5
-
55
-
-
78149301758
-
Sequential multiplex analyte capturing for phosphoprotein profiling
-
Poetz O, Henzler T, Hartmann M, et al. Sequential multiplex analyte capturing for phosphoprotein profiling. Mol. Cell. Proteomics 9, 2474-2481 (2010).
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2474-2481
-
-
Poetz, O.1
Henzler, T.2
Hartmann, M.3
-
56
-
-
0035848705
-
Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front
-
DOI 10.1038/sj.onc.1204265
-
Paweletz CP, Charboneau L, Bichsel VE, et al. Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene 20, 1981-1989 (2001). (Pubitemid 32458030)
-
(2001)
Oncogene
, vol.20
, Issue.16
, pp. 1981-1989
-
-
Pjaweletz, C.P.1
Charboneau, L.2
Bichsel, V.E.3
Simone, N.L.4
Chen, T.5
Gillespie, J.W.6
Emmert-Buck, M.R.7
Roth, M.J.8
Petricoin III, E.F.9
Liotta, L.A.10
-
57
-
-
0035848705
-
Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front
-
DOI 10.1038/sj.onc.1204265
-
Liotta LA, Paweletz CP, Charboneau L, et al. Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene 20, 1981-1989 (2001). (Pubitemid 32458030)
-
(2001)
Oncogene
, vol.20
, Issue.16
, pp. 1981-1989
-
-
Pjaweletz, C.P.1
Charboneau, L.2
Bichsel, V.E.3
Simone, N.L.4
Chen, T.5
Gillespie, J.W.6
Emmert-Buck, M.R.7
Roth, M.J.8
Petricoin III, E.F.9
Liotta, L.A.10
-
58
-
-
0034969901
-
New technologies for biomarker analysis of prostate cancer progression: Laser capture microdissection and tissue proteomics
-
Paweletz CP, Liotta LA, Petricoin EF. New technologies for biomarker analysis of prostate cancer progression: laser capture microdissection and tissue proteomics. Urology 57, 160-163 (2001).
-
(2001)
Urology
, vol.57
, pp. 160-163
-
-
Paweletz, C.P.1
Liotta, L.A.2
Petricoin, E.F.3
-
59
-
-
0035487804
-
New approaches to proteomic analysis of breast cancer
-
Wulfkuhle JD, McLean KC, Paweletz CP, et al. New approaches to proteomic analysis of breast cancer. Proteomics 1, 1205-1215 (2001).
-
(2001)
Proteomics
, vol.1
, pp. 1205-1215
-
-
Wulfkuhle, J.D.1
McLean, K.C.2
Paweletz, C.P.3
-
60
-
-
0242406333
-
Utility of reverse phase protein arrays: Applications to signalling pathways and human body arrays
-
Charboneau L, Tory H, Chen T, et al. Utility of reverse phase protein arrays: applications to signalling pathways and human body arrays. Brief. Funct. Genomic Proteomic 1, 305-315 (2002).
-
(2002)
Brief. Funct. Genomic Proteomic
, vol.1
, pp. 305-315
-
-
Charboneau, L.1
Tory, H.2
Chen, T.3
-
61
-
-
10744226821
-
Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays
-
DOI 10.1073/pnas.2331323100
-
Espina V, Munson PJ, Petricoin E, et al. Proteomic profiling of the NCI-60 cancer cell lines using new high-density reversephase lysate microarrays. Proc. Natl Acad. Sci. USA 100, 14229-14234 (2003). (Pubitemid 37499219)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.SUPPL. 2
, pp. 14229-14234
-
-
Nishizuka, S.1
Charboneau, L.2
Young, L.3
Major, S.4
Reinhold, W.C.5
Waltham, M.6
Kouros-Mehr, H.7
Bussey, K.J.8
Lee, J.K.9
Espina, V.10
Munson, P.J.11
Petricoin III, E.12
Liotta, L.A.13
Weinstein, J.N.14
-
62
-
-
0242523651
-
Signal pathway profiling of prostate cancer using reverse phase protein arrays
-
DOI 10.1002/pmic.200300598
-
Grubb RL, Calvert VS, Wulkuhle JD, et al. Signal pathway profiling of prostate cancer using reverse phase protein arrays. Proteomics 3, 2142-2146 (2003). (Pubitemid 37414080)
-
(2003)
Proteomics
, vol.3
, Issue.11
, pp. 2142-2146
-
-
Grubb, R.L.1
Calvert, V.S.2
Wulkuhle, J.D.3
Paweletz, C.P.4
Linehan, W.M.5
Phillips, J.L.6
Chuaqui, R.7
Valasco, A.8
Gillespie, J.9
Emmert-Buck, M.10
Liotta, L.A.11
Petricoin, E.F.12
-
63
-
-
17844377553
-
Use of reverse phase protein microarrays and reference standard development for molecular network analysis of metastatic ovarian carcinoma
-
DOI 10.1074/mcp.T500003-MCP200
-
Sheehan KM, Calvert VS, Kay EW, et al. Use of reverse phase protein microarrays and reference standard development for molecular network analysis of metastatic ovarian carcinoma. Mol. Cell. Proteomics 4, 346-355 (2005). (Pubitemid 40590555)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.4
, pp. 346-355
-
-
Sheehan, K.M.1
Calvert, V.S.2
Kay, E.W.3
Lu, Y.4
Fishman, D.5
Espina, V.6
Aquino, J.7
Speer, R.8
Araujo, R.9
Mills, G.B.10
Liotta, L.A.11
Petricoin III, E.F.12
Wulfkuhle, J.D.13
-
64
-
-
17844377553
-
Use of reverse phase protein microarrays and reference standard development for molecular network analysis of metastatic ovarian carcinoma
-
DOI 10.1074/mcp.T500003-MCP200
-
Mills GB, Liotta LA, Petricoin EF, et al. Use of reverse phase protein microarrays and reference standard development for molecular network analysis of metastatic ovarian carcinoma. Mol. Cell. Proteomics 4, 346-355 (2005). (Pubitemid 40590555)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.4
, pp. 346-355
-
-
Sheehan, K.M.1
Calvert, V.S.2
Kay, E.W.3
Lu, Y.4
Fishman, D.5
Espina, V.6
Aquino, J.7
Speer, R.8
Araujo, R.9
Mills, G.B.10
Liotta, L.A.11
Petricoin III, E.F.12
Wulfkuhle, J.D.13
-
65
-
-
33750456480
-
Reverse phase protein array: Validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells
-
DOI 10.1158/1535-7163.MCT-06-0334
-
Tibes R, Qiu Y, Lu Y, et al. Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells. Mol. Cancer Ther. 5, 2512-2521 (2006). (Pubitemid 44650915)
-
(2006)
Molecular Cancer Therapeutics
, vol.5
, Issue.10
, pp. 2512-2521
-
-
Tibes, R.1
Qiu, Y.H.2
Lu, Y.3
Hennessy, B.4
Andreeff, M.5
Mills, G.B.6
Kornblau, S.M.7
-
66
-
-
33749037412
-
State-based discovery: A multidimensional screen for small-molecule modulators of EGF signaling
-
DOI 10.1038/nmeth931, PII NMETH931
-
Sevecka M, MacBeath G. State-based discovery: a multidimensional screen for small-molecule modulators of EGF signaling. Nat. Methods 3, 825-831 (2006). (Pubitemid 44445830)
-
(2006)
Nature Methods
, vol.3
, Issue.10
, pp. 825-831
-
-
Sevecka, M.1
MacBeath, G.2
-
67
-
-
79953330541
-
Lysate microarrays enable high-throughput, quantitative investigations of cellular signaling
-
M110.005363
-
Sevecka M, Wolf-Yadlin A, Macbeath G. Lysate microarrays enable high-throughput, quantitative investigations of cellular signaling. Mol. Cell. Proteomics 10(4), M110.005363 (2011).
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.4
-
-
Sevecka, M.1
Wolf-Yadlin, A.2
MacBeath, G.3
-
68
-
-
77449126570
-
Systems analysis of EGF receptor signaling dynamics with microwestern arrays
-
Ciaccio MF, Wagner JP, Chuu C, Lauffenburger DA, Jones RB. Systems analysis of EGF receptor signaling dynamics with microwestern arrays. Nat. Methods 7, 148-155 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 148-155
-
-
Ciaccio, M.F.1
Wagner, J.P.2
Chuu, C.3
Lauffenburger, D.A.4
Jones, R.B.5
-
69
-
-
33750351769
-
Data-driven modelling of signal-transduction networks
-
DOI 10.1038/nrm2041, PII NRM2041
-
Janes KA, Yaffe MB. Data-driven modelling of signal-transduction networks. Nat. Rev. Mol. Cell. Biol. 7, 820-828 (2006). (Pubitemid 44627475)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.11
, pp. 820-828
-
-
Janes, K.A.1
Yaffe, M.B.2
-
70
-
-
15944426084
-
Bayesian analysis of signaling networks governing embryonic stem cell fate decisions
-
DOI 10.1093/bioinformatics/bti056
-
Woolf PJ, Prudhomme W, Daheron L, Daley GQ, Lauffenburger DA. Bayesian analysis of signaling networks governing embryonic stem cell fate decisions. Bioinformatics 21, 741-753 (2005). (Pubitemid 40439410)
-
(2005)
Bioinformatics
, vol.21
, Issue.6
, pp. 741-753
-
-
Woolf, P.J.1
Prudhomme, W.2
Daheron, L.3
Daley, G.Q.4
Lauffenburger, D.A.5
-
71
-
-
1542327692
-
Multivariate proteomic analysis of murine embryonic stem cell self-renewal versus differentation signaling
-
DOI 10.1073/pnas.0308768101
-
Prudhomme W, Daley GQ, Zandstra P, Lauffenburger DA. Multivariate proteomic analysis of murine embryonic stem cell self-renewal versus differentiation signaling. Proc. Natl Acad. Sci. USA 101, 2900-2905 (2004). (Pubitemid 38327708)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.9
, pp. 2900-2905
-
-
Prudhomme, W.1
Daley, G.Q.2
Zandstra, P.3
Lauffenburger, D.A.4
-
72
-
-
77956554551
-
Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes
-
Alexopoulos LG, Saez-Rodriguez J, Cosgrove BD, Lauffenburger DA, Sorger PK. Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes. Mol. Cell. Proteomics 9, 1849-1865 (2010).
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 1849-1865
-
-
Alexopoulos, L.G.1
Saez-Rodriguez, J.2
Cosgrove, B.D.3
Lauffenburger, D.A.4
Sorger, P.K.5
-
73
-
-
33646036758
-
The response of human epithelial cells to TNF involves an inducible autocrine cascade
-
Janes KA, Gaudet S, Albeck JG, Nielsen UB, Lauffenburger DA, Sorger PK. The response of human epithelial cells to TNF involves an inducible autocrine cascade. Cell 124, 1225-1239 (2006).
-
(2006)
Cell
, vol.124
, pp. 1225-1239
-
-
Janes, K.A.1
Gaudet, S.2
Albeck, J.G.3
Nielsen, U.B.4
Lauffenburger, D.A.5
Sorger, P.K.6
-
74
-
-
53749085729
-
Cytokine-induced signaling networks prioritize dynamic range over signal strength
-
Janes KA, Reinhardt HC, Yaffe MB. Cytokine-induced signaling networks prioritize dynamic range over signal strength. Cell 135, 343-354 (2008).
-
(2008)
Cell
, vol.135
, pp. 343-354
-
-
Janes, K.A.1
Reinhardt, H.C.2
Yaffe, M.B.3
-
75
-
-
34547623194
-
Common effector processing mediates cell-specific responses to stimuli
-
DOI 10.1038/nature06001, PII NATURE06001
-
Miller-Jensen K, Janes KA, Brugge JS, Lauffenburger DA. Common effector processing mediates cell-specific responses to stimuli. Nature 448, 604-608 (2007). (Pubitemid 47206933)
-
(2007)
Nature
, vol.448
, Issue.7153
, pp. 604-608
-
-
Miller-Jensen, K.1
Janes, K.A.2
Brugge, J.S.3
Lauffenburger, D.A.4
-
76
-
-
77953593640
-
Cytokine-associated drug toxicity in human hepatocytes is associated with signaling network dysregulation
-
Cosgrove BD, Alexopoulos LG, Hang T, et al. Cytokine-associated drug toxicity in human hepatocytes is associated with signaling network dysregulation. Mol. BioSyst. 6 1195 (2010).
-
(2010)
Mol. BioSyst.
, vol.6
, pp. 1195
-
-
Cosgrove, B.D.1
Alexopoulos, L.G.2
Hang, T.3
-
77
-
-
77952902183
-
Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics
-
Nakakuki T, Birtwistle MR, Saeki Y, et al. Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics. Cell 141, 884-896 (2010).
-
(2010)
Cell
, vol.141
, pp. 884-896
-
-
Nakakuki, T.1
Birtwistle, M.R.2
Saeki, Y.3
-
78
-
-
44949201115
-
A genome-wide association study identifies protein quantitative trait loci (pQTLs)
-
Melzer D, Perry JRB, Hernandez D, et al. A genome-wide association study identifies protein quantitative trait loci (pQTLs). PLoS Genet. 4, e1000072 (2008).
-
(2008)
PLoS Genet.
, vol.4
-
-
Melzer, D.1
Jrb, P.2
Hernandez, D.3
-
79
-
-
77954732472
-
Identification of quantitative trait loci underlying proteome variation in human lymphoblastoid cells
-
Garge N, Pan H, Rowland MD, et al. Identification of quantitative trait loci underlying proteome variation in human lymphoblastoid cells. Mol. Cell. Proteomics 9, 1383-1399 (2010).
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 1383-1399
-
-
Garge, N.1
Pan, H.2
Rowland, M.D.3
-
80
-
-
35648969195
-
Genetic basis of proteomevariation in yeast
-
Foss EJ, Radulovic D, Shaffer SA, et al. Genetic basis of proteomevariation in yeast. Nat. Genet. 39, 1369-1375 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 1369-1375
-
-
Foss, E.J.1
Radulovic, D.2
Shaffer, S.A.3
-
81
-
-
79959812980
-
Comparative analysis of proteome and transcriptome variation in mouse
-
Ghazalpour A, Bennett B, Petyuk VA, et al. Comparative analysis of proteome and transcriptome variation in mouse. PLoS Genet. 7, e1001393 (2011).
-
(2011)
PLoS Genet.
, vol.7
-
-
Ghazalpour, A.1
Bennett, B.2
Petyuk, V.A.3
-
82
-
-
53049089340
-
Can proteomics retire the western blot?
-
Mann M. Can proteomics retire the western blot? J. Proteome Res. 7, 3065 (2008).
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3065
-
-
Mann, M.1
|