-
1
-
-
0019551730
-
"western blotting":electrophoretic transfer of proteins from sodium dodecyl sulfate polyacrylamide gels to unmodifed nitrocellulose and radiographic detection with antibody and radioiodinated protein A
-
Burnette, W. "Western blotting": electrophoretic transfer of proteins from sodium dodecyl sulfate polyacrylamide gels to unmodifed nitrocellulose and radiographic detection with antibody and radioiodinated protein A. Anal. Biochem. 112, 195-203 (1981).
-
(1981)
Anal. Biochem.
, vol.112
, pp. 195-203
-
-
Burnette, W.1
-
2
-
-
0034969901
-
New technologies for biomarker analysis of prostate cancer progression: Laser capture microdissection and tissue proteomics
-
Paweletz, C.P., Liotta, L.A. & Petricoin, E.F. New technologies for biomarker analysis of prostate cancer progression: Laser capture microdissection and tissue proteomics. Urology 57, 160-163 (2001).
-
(2001)
Urology
, vol.57
, pp. 160-163
-
-
Paweletz, C.P.1
Liotta, L.A.2
Petricoin, E.F.3
-
3
-
-
0035848705
-
Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front
-
Paweletz, C.P. et al. Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene 20, 1981-1989 (2001).
-
(2001)
Oncogene
, vol.20
, pp. 1981-1989
-
-
Paweletz, C.P.1
-
4
-
-
33749037412
-
State-based discovery: A multidimensional screen for small-molecule modulators of EGF signaling
-
Sevecka, M. & MacBeath, G. State-based discovery: a multidimensional screen for small-molecule modulators of EGF signaling. Nat. Methods 3, 825-831 (2006).
-
(2006)
Nat. Methods
, vol.3
, pp. 825-831
-
-
Sevecka, M.1
MacBeath, G.2
-
5
-
-
17644427718
-
Causal protein-signaling networks derived from multiparameter single-cell data
-
Sachs, K., Perez, O., Peer, D., Lauffenburger, D.A. & Nolan, G.P. Causal protein-signaling networks derived from multiparameter single-cell data. Science 308, 523-529 (2005).
-
(2005)
Science
, vol.308
, pp. 523-529
-
-
Sachs, K.1
Perez, O.2
Peer, D.3
Lauffenburger, D.A.4
Nolan, G.P.5
-
6
-
-
36849065315
-
Global survey of phosphotyrosine signaling identifes oncogenic kinases in lung cancer
-
Rikova, K. et al. Global survey of phosphotyrosine signaling identifes oncogenic kinases in lung cancer. Cell 131, 1190-1203 (2007).
-
(2007)
Cell
, vol.131
, pp. 1190-1203
-
-
Rikova, K.1
-
7
-
-
33750456519
-
Global, in vivo and site-specifc phosphorylation dynamics in signaling networks
-
Olsen, J.V. et al. Global, in vivo and site-specifc phosphorylation dynamics in signaling networks. Cell 127, 635-648 (2006).
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
-
8
-
-
33750696663
-
Effects of HER2 overexpression on cell signaling networks governing proliferation and migration
-
Wolf-Yadlin, A. et al. Effects of HER2 overexpression on cell signaling networks governing proliferation and migration. Mol. Syst. Biol. 2, 54 (2006).
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 54
-
-
Wolf-Yadlin, A.1
-
9
-
-
33750456480
-
Reverse phase protein array: Validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells
-
Tibes, R. et al. Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells. Mol. Cancer Ther. 5, 2512-2521 (2006).
-
(2006)
Mol. Cancer Ther.
, vol.5
, pp. 2512-2521
-
-
Tibes, R.1
-
10
-
-
30544449081
-
A quantitative protein interaction network for the ErbB receptors using protein microarrays
-
DOI 10.1038/nature04177, PII NATURE04177
-
Jones, R.B., Gordus, A., Krall, J.A. & MacBeath, G. A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature 439, 168-174 (2006). (Pubitemid 43083134)
-
(2006)
Nature
, vol.439
, Issue.7073
, pp. 168-174
-
-
Jones, R.B.1
Gordus, A.2
Krall, J.A.3
MacBeath, G.4
-
11
-
-
0008486660
-
Monoclonal antibody against epidermal growth factor receptor is internalized without stimulating receptor phosphorylation
-
Sunada, H., Magun, B.E., Mendelsohn, J. & MacLeod, C.L. Monoclonal antibody against epidermal growth factor receptor is internalized without stimulating receptor phosphorylation. Proc. Natl. Acad. Sci. USA 83, 3825-3829 (1986).
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 3825-3829
-
-
Sunada, H.1
Magun, B.E.2
Mendelsohn, J.3
MacLeod, C.L.4
-
12
-
-
0019861187
-
Increased phosphotyrosine content and inhibition of proliferation in EGF-treated A431 cells
-
Gill, G.N. & Lazar, C.S. Increased phosphotyrosine content and inhibition of proliferation in EGF-treated A431 cells. Nature 293, 305-307 (1981).
-
(1981)
Nature
, vol.293
, pp. 305-307
-
-
Gill, G.N.1
Lazar, C.S.2
-
13
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
DOI 10.1073/pnas.0608638104
-
Wolf-Yadlin, A., Hautaniemi, S., Lauffenburger, D.A. & White, F.M. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl. Acad. Sci. USA 104, 5860-5865 (2007). (Pubitemid 47175624)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.14
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
14
-
-
0037352170
-
Involvement of PI3K//Akt pathway in cell cycle progression, apoptosis and neoplastic transformation: A target for cancer chemotherapy
-
Chang, F. et al. Involvement of PI3K//Akt pathway in cell cycle progression, apoptosis and neoplastic transformation: a target for cancer chemotherapy. Leukemia 17, 590-603 (2003).
-
(2003)
Leukemia
, vol.17
, pp. 590-603
-
-
Chang, F.1
-
15
-
-
17644412264
-
Bayesian network analysis of signaling networks: A primer
-
Pe'er, D. Bayesian network analysis of signaling networks: a primer. Sci. STKE 2005, l4 (2005).
-
(2005)
Sci. STKE
, vol.14
, pp. 2005
-
-
Pe'Er, D.1
-
17
-
-
84862287246
-
Exact Bayesian structure learning from uncertain interventions
-
Eaton, D. & Murphy, K. Exact Bayesian structure learning from uncertain interventions. in Proc. 12th Conf. on AI and Stats, 107-114 (2007).
-
(2007)
Proc. 12th Conf. on AI and Stats
, pp. 107-114
-
-
Eaton, D.1
Murphy, K.2
-
18
-
-
0042496103
-
Learning equivalence classes of bayesian-network structures
-
Chickering, D.M. Learning equivalence classes of bayesian-network structures. J. Mach. Learn. Res. 2, 445-498 (2002).
-
(2002)
J. Mach. Learn. Res.
, vol.2
, pp. 445-498
-
-
Chickering, D.M.1
-
19
-
-
0021204118
-
Autophosphorylation sites on the epidermal growth factor receptor
-
Downward, J., Parker, P. & Waterfeld, M.D. Autophosphorylation sites on the epidermal growth factor receptor. Nature 311, 483-485 (1984). (Pubitemid 14035459)
-
(1984)
Nature
, vol.311
, Issue.5985
, pp. 483-485
-
-
Downward, J.1
Parker, P.2
Waterfield, M.D.3
-
20
-
-
0034805908
-
Receptor heterodimerization: Essential mechanism for platelet-derived growth factor-induced epidermal growth factor receptor transactivation
-
Saito, Y., Haendeler, J., Hojo, Y., Yamamoto, K. & Berk, B.C. Receptor heterodimerization: essential mechanism for platelet-derived growth factor-induced epidermal growth factor receptor transactivation. Mol. Cell. Biol. 21, 6387-6394 (2001).
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 6387-6394
-
-
Saito, Y.1
Haendeler, J.2
Hojo, Y.3
Yamamoto, K.4
Berk, B.C.5
-
21
-
-
33748749862
-
N-glycosylation of fbroblast growth factor receptor 1 regulates ligand and heparan sulfate co-receptor binding
-
Duchesne, L., Tissot, B., Rudd, T.R., Dell, A. & Fernig, D.G. N-glycosylation of fbroblast growth factor receptor 1 regulates ligand and heparan sulfate co-receptor binding. J. Biol. Chem. 281, 27178-27189 (2006).
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 27178-27189
-
-
Duchesne, L.1
Tissot, B.2
Rudd, T.R.3
Dell, A.4
Fernig, D.G.5
-
22
-
-
0037075815
-
SHP-2 is involved in heterodimer specifc loss of phosphorylation of Tyr771 in the PDGF beta-receptor
-
Ekman, S., Kallin, A., Engström, U., Heldin, C. & Rönnstrand, L. SHP-2 is involved in heterodimer specifc loss of phosphorylation of Tyr771 in the PDGF beta-receptor. Oncogene 21, 1870-1875 (2002).
-
(2002)
Oncogene
, vol.21
, pp. 1870-1875
-
-
Ekman, S.1
Kallin, A.2
Engström, U.3
Heldin, C.4
Rönnstrand, L.5
-
23
-
-
0023755783
-
Platelet-derived growth factor induces multisite phosphorylation of pp60c-src and increases its protein-tyrosine kinase activity
-
Gould, K.L. & Hunter, T. Platelet-derived growth factor induces multisite phosphorylation of pp60c-src and increases its protein-tyrosine kinase activity. Mol. Cell. Biol. 8, 3345-3356 (1988).
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 3345-3356
-
-
Gould, K.L.1
Hunter, T.2
-
24
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
Margolin, A.A. et al. ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics 7 (Suppl. 1), S7 (2006).
-
(2006)
BMC Bioinformatics
, vol.7-57
, Issue.SUPPL. 1
-
-
Margolin, A.A.1
-
25
-
-
33846400424
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profles
-
Faith, J.J. et al. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profles. PLoS Biol. 5, e8 (2007).
-
(2007)
PLoS Biol.
, vol.5
-
-
Faith, J.J.1
-
26
-
-
50949117527
-
Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress
-
Taylor, R.C., Acquaah-Mensah, G., Singhal, M., Malhotra, D. & Biswal, S. Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress. PLOS Comput. Biol. 4, e1000166 (2008).
-
(2008)
PLOS Comput. Biol.
, vol.4
-
-
Taylor, R.C.1
Acquaah-Mensah, G.2
Singhal, M.3
Malhotra, D.4
Biswal, S.5
-
27
-
-
63049128934
-
A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches
-
Cantone, I. et al. A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches. Cell 137, 172-181 (2009).
-
(2009)
Cell
, vol.137
, pp. 172-181
-
-
Cantone, I.1
-
28
-
-
0344464762
-
And specifcity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
-
Husmeier, D. Sensitivity and specifcity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. Bioinformatics 19, 2271-2282 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. 2271-2282
-
-
Husmeier, D.1
Sensitivity2
-
29
-
-
37349012503
-
Redox regulation of the protein tyrosine phosphatase PTP1B in cancer cells
-
Lou, Y.W. et al. Redox regulation of the protein tyrosine phosphatase PTP1B in cancer cells. FEBS J. 275, 69-88 (2008).
-
(2008)
FEBS J.
, vol.275
, pp. 69-88
-
-
Lou, Y.W.1
-
30
-
-
0037881830
-
Chemical dissection of the effects of tyrosine phosphorylation of SHP-2
-
Lu, W., Shen, K. & Cole, P.A. Chemical dissection of the effects of tyrosine phosphorylation of SHP-2. Biochemistry 42, 5461-5468 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 5461-5468
-
-
Lu, W.1
Shen, K.2
Cole, P.A.3
-
31
-
-
0037262841
-
Being Bayesian about Bayesian network structure: A Bayesian approach to structure discovery in Bayesian networks
-
Friedman, N. & Koller, D. Being Bayesian about Bayesian network structure: a Bayesian approach to structure discovery in Bayesian networks. Mach. Learn. 50, 95-125 (2003).
-
(2003)
Mach. Learn.
, vol.50
, pp. 95-125
-
-
Friedman, N.1
Koller, D.2
-
32
-
-
34249761849
-
Learning Bayesian networks: The combination of knowledge and statistical data
-
Heckerman, D., Geiger, D. & Chickering, D.M. Learning Bayesian networks: The combination of knowledge and statistical data. Mach. Learn. 20, 197-243 (1995).
-
(1995)
Mach. Learn.
, vol.20
, pp. 197-243
-
-
Heckerman, D.1
Geiger, D.2
Chickering, D.M.3
-
33
-
-
21844520724
-
Bayesian graphical models for discrete data
-
Madigan, D. & York, J. Bayesian graphical models for discrete data. Int. Stat. Rev. 63, 215-232 (1995).
-
(1995)
Int. Stat. Rev.
, vol.63
, pp. 215-232
-
-
Madigan, D.1
York, J.2
-
34
-
-
59949086432
-
Minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information
-
Meyer, P., Laftte, F. & Bontempi, G. minet: a R/Bioconductor package for inferring large transcriptional networks using mutual information. BMC Bioinformatics 9, 461 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 461
-
-
Meyer, P.1
Laftte, F.2
Bontempi, G.3
|