Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics

Science

Volumn 320, Issue 5878, 2008, Pages 938-941

  Baerenfaller, Katja ^a,b   Grossmann, Jonas ^a,b,c   Grobei, Monica A ^b   Hull, Roger ^d   Hirsch Hoffmann, Matthias ^a   Yalovsky, Shaul ^e   Zimmermann, Philip ^a   Grossniklaus, Ueli ^b   Gruissem, Wilhelm ^a,b,c   Baginsky, Sacha ^a,b  

^a ETH ZURICH   (Switzerland)

^b UNIVERSITY OF ZURICH   (Switzerland)

^c FUNCTIONAL GENOMICS CENTER ZURICH   (Switzerland)

^d UNIVERSITY OF MANCHESTER   (United Kingdom)

^e TEL AVIV UNIVERSITY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION; GENOME; HERB; MODELING; PROTEOMICS; QUANTITATIVE ANALYSIS;

ARABIDOPSIS; ARTICLE; CHLOROPLAST; CONTROLLED STUDY; COTYLEDON; GENETIC MODEL; GENOME; ION TRAP MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; PHOTOSYNTHESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN DATABASE; PROTEIN EXPRESSION; PROTEIN TRANSPORT; PROTEOMICS; ALGORITHM; AMINO ACID SEQUENCE; BIOLOGICAL MODEL; BIOLOGY; CELL CULTURE; CHEMISTRY; CYTOLOGY; FLOWER; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC DATABASE; GENETIC TRANSCRIPTION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT ROOT; PLANT SEED;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

ARABIDOPSIS PROTEIN; BIOLOGICAL MARKER; PEPTIDE; PROTEOME;

ALGORITHMS; AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; BIOLOGICAL MARKERS; CELLS, CULTURED; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; FLOWERS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PEPTIDES; PLANT ROOTS; PROTEOME; PROTEOMICS; SEEDS; TRANSCRIPTION, GENETIC;

EID: 44249091879     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1157956     Document Type: Article

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29. We thank the Functional Genomics Center Zurich, especially B. Roschitzki, C. Panse, and M. Schmidt, for providing infrastructure and technical support; E. Brunner from the Center for Model Organism Proteomes (C-MOP) for project coordination; and J. Fütterer from the Institute of Plant Sciences for critical reading of the manuscript. We also thank our colleagues at the European Bioinformatics Institute for their help in building the PRIDE Arabidopsis peptide database. This work was supported by the SystemsX initiative of ETH Zurich (K.B., W.G., S.B.) and the University Research Priority Program in Systems Biology/Functional Genomics (U.G. and M.A.G.) in the framework of the C-MOP project, and by the European Framework Programme 6 AGRON-OMICS project (LSHG-CT-2006-037704, W.G.). S.Y. was supported by a sabbatical fellowship provided by ETH Zurich.