-
2
-
-
77954202405
-
A transformed scientific method
-
In Hey T, Tansley S, Tolle K, eds; Redmond, WA: Microsoft Research.
-
Gray J. 2009. A transformed scientific method. In Hey T, Tansley S, Tolle K, eds; The Fourth Paradigm. Data-Intensive Scientific Discovery. Redmond, WA: Microsoft Research.
-
(2009)
The Fourth Paradigm. Data-Intensive Scientific Discovery
-
-
Gray, J.1
-
3
-
-
49649122472
-
Moving AHEAD with an international human epigenome project
-
American Association for Cancer Research Human Epigenome Task Force EUNoESAB
-
American Association for Cancer Research Human Epigenome Task Force EUNoESAB. 2008. Moving AHEAD with an international human epigenome project. Nature 454: 711-5.
-
(2008)
Nature
, vol.454
, pp. 711-715
-
-
-
4
-
-
46649099510
-
1000 Genomes project
-
Siva N. 2008. 1000 Genomes project. Nat Biotechnol 26: 256.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 256
-
-
Siva, N.1
-
5
-
-
77951115122
-
International network of cancer genome projects
-
Hudson TJ, Anderson W, Artez A, Barker AD, et al. 2010. International network of cancer genome projects. Nature 464: 993-8.
-
(2010)
Nature
, vol.464
, pp. 993-998
-
-
Hudson, T.J.1
Anderson, W.2
Artez, A.3
Barker, A.D.4
-
6
-
-
0035100888
-
Biomarkers and surrogate endpoints: preferred definitions and conceptual framework
-
Group BDW
-
Group BDW. 2001. Biomarkers and surrogate endpoints: preferred definitions and conceptual framework. Clin Pharmacol Ther 69: 89-95.
-
(2001)
Clin Pharmacol Ther
, vol.69
, pp. 89-95
-
-
-
7
-
-
0023550835
-
Expression of cloned sequences in biopsies of human colonic tissue and in colonic carcinoma cells induced to differentiate in vitro
-
Augenlicht LH, Wahrman MZ, Halsey H, Anderson L, et al. 1987. Expression of cloned sequences in biopsies of human colonic tissue and in colonic carcinoma cells induced to differentiate in vitro. Cancer Res 47: 6017-21.
-
(1987)
Cancer Res
, vol.47
, pp. 6017-6021
-
-
Augenlicht, L.H.1
Wahrman, M.Z.2
Halsey, H.3
Anderson, L.4
-
8
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, et al. 1999. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-7.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
-
9
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, et al. 2002. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 415: 436-42.
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
-
10
-
-
78650735473
-
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
-
Shi L, Campbell G, Jones WD, Campagne F, et al. 2010. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol 28: 827-38.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 827-838
-
-
Shi, L.1
Campbell, G.2
Jones, W.D.3
Campagne, F.4
-
11
-
-
77950910419
-
Revealing strengths and weaknesses of methods for gene network inference
-
Marbach D, Prill RJ, Schaffter T, Mattiussi C, et al. 2010. Revealing strengths and weaknesses of methods for gene network inference. Proc Natl Acad Sci USA 107: 6286-91.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 6286-6291
-
-
Marbach, D.1
Prill, R.J.2
Schaffter, T.3
Mattiussi, C.4
-
12
-
-
52149097555
-
Regulatory networks define phenotypic classes of human stem cell lines
-
Müller FJ, Laurent LC, Kostka D, Ulitsky I, et al. 2008. Regulatory networks define phenotypic classes of human stem cell lines. Nature 455: 401-5.
-
(2008)
Nature
, vol.455
, pp. 401-405
-
-
Müller, F.J.1
Laurent, L.C.2
Kostka, D.3
Ulitsky, I.4
-
13
-
-
79957795795
-
miR-371-3 expression predicts neural differentiation propensity in human pluripotent stem cells
-
Kim H, Lee G, Ganat Y, Papapetrou EP, et al. 2011. miR-371-3 expression predicts neural differentiation propensity in human pluripotent stem cells. Cell Stem Cell 8: 695-706.
-
(2011)
Cell Stem Cell
, vol.8
, pp. 695-706
-
-
Kim, H.1
Lee, G.2
Ganat, Y.3
Papapetrou, E.P.4
-
14
-
-
33744960411
-
A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling
-
Hummel M, Bentink S, Berger H, Klapper W, et al. 2006. A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling. N Engl J Med 354: 2419-30.
-
(2006)
N Engl J Med
, vol.354
, pp. 2419-2430
-
-
Hummel, M.1
Bentink, S.2
Berger, H.3
Klapper, W.4
-
15
-
-
36549060490
-
The MINDACT trial: the first prospective clinical validation of a genomic tool
-
Cardoso F, Piccart-Gebhart M, Van't Veer L, Rutgers E. 2007. The MINDACT trial: the first prospective clinical validation of a genomic tool. Mol Oncol 1: 246-51.
-
(2007)
Mol Oncol
, vol.1
, pp. 246-251
-
-
Cardoso, F.1
Piccart-Gebhart, M.2
Van't Veer, L.3
Rutgers, E.4
-
17
-
-
77149147144
-
Human embryonic stem cell lines and their use in international research
-
Loser P, Schirm J, Guhr A, Wobus AM, et al. 2010. Human embryonic stem cell lines and their use in international research. Stem Cells 28: 240-6.
-
(2010)
Stem Cells
, vol.28
, pp. 240-246
-
-
Loser, P.1
Schirm, J.2
Guhr, A.3
Wobus, A.M.4
-
18
-
-
77749279749
-
Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency
-
Hu BY, Weick JP, Yu J, Ma LX, et al. 2010. Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency. Proc Natl Acad Sci USA 107: 4335-40.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 4335-4340
-
-
Hu, B.Y.1
Weick, J.P.2
Yu, J.3
Ma, L.X.4
-
19
-
-
77955449906
-
Epigenetic memory in induced pluripotent stem cells
-
Kim K, Doi A, Wen B, Ng K, et al. 2010. Epigenetic memory in induced pluripotent stem cells. Nature 467: 285-90.
-
(2010)
Nature
, vol.467
, pp. 285-290
-
-
Kim, K.1
Doi, A.2
Wen, B.3
Ng, K.4
-
20
-
-
79952126043
-
Copy number variation and selection during reprogramming to pluripotency
-
Hussein SM, Batada NN, Vuoristo S, Ching RW, et al. 2011. Copy number variation and selection during reprogramming to pluripotency. Nature 471: 58-62.
-
(2011)
Nature
, vol.471
, pp. 58-62
-
-
Hussein, S.M.1
Batada, N.N.2
Vuoristo, S.3
Ching, R.W.4
-
21
-
-
78650971216
-
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture
-
Laurent LC, Ulitsky I, Slavin I, Tran H, et al. 2011. Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. Cell Stem Cell 8: 106-18.
-
(2011)
Cell Stem Cell
, vol.8
, pp. 106-118
-
-
Laurent, L.C.1
Ulitsky, I.2
Slavin, I.3
Tran, H.4
-
22
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
Lister R, Pelizzola M, Kida YS, Hawkins RD, et al. 2011. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 471: 68-73.
-
(2011)
Nature
, vol.471
, pp. 68-73
-
-
Lister, R.1
Pelizzola, M.2
Kida, Y.S.3
Hawkins, R.D.4
-
23
-
-
79952258224
-
Somatic coding mutations in human induced pluripotent stem cells
-
Gore A, Li Z, Fung HL, Young JE, et al. 2011. Somatic coding mutations in human induced pluripotent stem cells. Nature 471: 63-7.
-
(2011)
Nature
, vol.471
, pp. 63-67
-
-
Gore, A.1
Li, Z.2
Fung, H.L.3
Young, J.E.4
-
24
-
-
85027958626
-
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
-
Ohi Y, Qin H, Hong C, Blouin L, et al. 2011. Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nat Cell Biol 13: 541-9.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 541-549
-
-
Ohi, Y.1
Qin, H.2
Hong, C.3
Blouin, L.4
-
25
-
-
79551677421
-
Reference maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines
-
Bock C, Kiskinis E, Verstappen G, Gu H, et al. 2011. Reference maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines. Cell 144: 439-52.
-
(2011)
Cell
, vol.144
, pp. 439-452
-
-
Bock, C.1
Kiskinis, E.2
Verstappen, G.3
Gu, H.4
-
26
-
-
79957807595
-
Immunogenicity of induced pluripotent stem cells
-
Zhao T, Zhang ZN, Rong Z, Xu Y. 2011. Immunogenicity of induced pluripotent stem cells. Nature 474: 212-5.
-
(2011)
Nature
, vol.474
, pp. 212-215
-
-
Zhao, T.1
Zhang, Z.N.2
Rong, Z.3
Xu, Y.4
-
27
-
-
0025245614
-
Embryonic stem cells alone are able to support fetal development in the mouse
-
Nagy A, Gocza E, Diaz EM, Prideaux VR, et al. 1990. Embryonic stem cells alone are able to support fetal development in the mouse. Development 110: 815-21.
-
(1990)
Development
, vol.110
, pp. 815-821
-
-
Nagy, A.1
Gocza, E.2
Diaz, E.M.3
Prideaux, V.R.4
-
28
-
-
69949089630
-
iPS cells produce viable mice through tetraploid complementation
-
Zhao XY, Li W, Lv Z, Liu L, et al. 2009. iPS cells produce viable mice through tetraploid complementation. Nature 461: 86-90.
-
(2009)
Nature
, vol.461
, pp. 86-90
-
-
Zhao, X.Y.1
Li, W.2
Lv, Z.3
Liu, L.4
-
29
-
-
79956296654
-
Stem cells: the growing pains of pluripotency
-
Hayden EC. 2011. Stem cells: the growing pains of pluripotency. Nature 473: 272-4.
-
(2011)
Nature
, vol.473
, pp. 272-274
-
-
Hayden, E.C.1
-
30
-
-
77956634610
-
A call to standardize teratoma assays used to define human pluripotent cell lines
-
Müller FJ, Goldmann J, Loser P, Loring JF. 2010. A call to standardize teratoma assays used to define human pluripotent cell lines. Cell Stem Cell 6: 412-4.
-
(2010)
Cell Stem Cell
, vol.6
, pp. 412-414
-
-
Müller, F.J.1
Goldmann, J.2
Loser, P.3
Loring, J.F.4
-
31
-
-
78649998814
-
Putting stem cells to the test
-
Dolgin E. 2010. Putting stem cells to the test. Nat Med 16: 1354-7.
-
(2010)
Nat Med
, vol.16
, pp. 1354-1357
-
-
Dolgin, E.1
-
32
-
-
0000727065
-
Spontaneous testicular teratomas in an inbred strain of mice
-
Stevens LC, Little CC. 1954. Spontaneous testicular teratomas in an inbred strain of mice. Proc Natl Acad Sci USA 40: 1080-7.
-
(1954)
Proc Natl Acad Sci USA
, vol.40
, pp. 1080-1087
-
-
Stevens, L.C.1
Little, C.C.2
-
33
-
-
67649222358
-
Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures
-
Chin MH, Mason MJ, Xie W, Volinia S, et al. 2009. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell 5: 111-23.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 111-123
-
-
Chin, M.H.1
Mason, M.J.2
Xie, W.3
Volinia, S.4
-
34
-
-
77952425747
-
Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells
-
Stadtfeld M, Apostolou E, Akutsu H, Fukuda A, et al. 2010. Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells. Nature 465: 175-81.
-
(2010)
Nature
, vol.465
, pp. 175-181
-
-
Stadtfeld, M.1
Apostolou, E.2
Akutsu, H.3
Fukuda, A.4
-
35
-
-
33846933757
-
Qualification of embryonal carcinoma 2102Ep as a reference for human embryonic stem cell research
-
Josephson R, Ording CJ, Liu Y, Shin S, et al. 2007. Qualification of embryonal carcinoma 2102Ep as a reference for human embryonic stem cell research. Stem Cells 25: 437-46.
-
(2007)
Stem Cells
, vol.25
, pp. 437-446
-
-
Josephson, R.1
Ording, C.J.2
Liu, Y.3
Shin, S.4
-
36
-
-
0035511908
-
Molecular markers in CNS stem cell research: hitting a moving target
-
Kornblum HI, Geschwind DH. 2001. Molecular markers in CNS stem cell research: hitting a moving target. Nat Rev Neurosci 2: 843-6.
-
(2001)
Nat Rev Neurosci
, vol.2
, pp. 843-846
-
-
Kornblum, H.I.1
Geschwind, D.H.2
-
37
-
-
0026576937
-
Isolation of a candidate human hematopoietic stem-cell population
-
Baum CM, Weissman IL, Tsukamoto AS, Buckle AM, et al. 1992. Isolation of a candidate human hematopoietic stem-cell population. Proc Natl Acad Sci USA 89: 2804-8.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 2804-2808
-
-
Baum, C.M.1
Weissman, I.L.2
Tsukamoto, A.S.3
Buckle, A.M.4
-
38
-
-
79960106880
-
Isolation of single human hematopoietic stem cells capable of long-term multilineage engraftment
-
Notta F, Doulatov S, Laurenti E, Poeppl A, et al. 2011. Isolation of single human hematopoietic stem cells capable of long-term multilineage engraftment. Science 333: 218-21.
-
(2011)
Science
, vol.333
, pp. 218-221
-
-
Notta, F.1
Doulatov, S.2
Laurenti, E.3
Poeppl, A.4
-
39
-
-
0343236268
-
The radiation sensitivity of normal mouse bone marrow cells, determined by quantitative marrow transplantation into irradiated mice
-
McCulloch EA, Till JE. 1960. The radiation sensitivity of normal mouse bone marrow cells, determined by quantitative marrow transplantation into irradiated mice. Radiat Res 13: 115-25.
-
(1960)
Radiat Res
, vol.13
, pp. 115-125
-
-
McCulloch, E.A.1
Till, J.E.2
-
40
-
-
0024462072
-
Octamer binding proteins confer transcriptional activity in early mouse embryogenesis
-
Schöler HR, Balling R, Hatzopoulos AK, Suzuki N, et al. 1989. Octamer binding proteins confer transcriptional activity in early mouse embryogenesis. EMBO J 8: 2551-7.
-
(1989)
EMBO J
, vol.8
, pp. 2551-2557
-
-
Schöler, H.R.1
Balling, R.2
Hatzopoulos, A.K.3
Suzuki, N.4
-
41
-
-
0024433706
-
A family of octamer-specific proteins present during mouse embryogenesis: evidence for germline-specific expression of an Oct factor
-
Schöler HR, Hatzopoulos AK, Balling R, Suzuki N, et al. 1989. A family of octamer-specific proteins present during mouse embryogenesis: evidence for germline-specific expression of an Oct factor. EMBO J 8: 2543-50.
-
(1989)
EMBO J
, vol.8
, pp. 2543-2550
-
-
Schöler, H.R.1
Hatzopoulos, A.K.2
Balling, R.3
Suzuki, N.4
-
42
-
-
70349687407
-
Direct reprogramming of human neural stem cells by OCT4
-
Kim JB, Greber B, Arauzo-Bravo MJ, Meyer J, et al. 2009. Direct reprogramming of human neural stem cells by OCT4. Nature 461: 649-3.
-
(2009)
Nature
, vol.461
, pp. 649-643
-
-
Kim, J.B.1
Greber, B.2
Arauzo-Bravo, M.J.3
Meyer, J.4
-
43
-
-
34848874100
-
Oct4 expression is not required for mouse somatic stem cell self-renewal
-
Lengner CJ, Camargo FD, Hochedlinger K, Welstead GG, et al. 2007. Oct4 expression is not required for mouse somatic stem cell self-renewal. Cell Stem Cell 1: 403-15.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 403-415
-
-
Lengner, C.J.1
Camargo, F.D.2
Hochedlinger, K.3
Welstead, G.G.4
-
44
-
-
73849145104
-
A global view of protein expression in human cells, tissues, and organs
-
Ponten F, Gry M, Fagerberg L, Lundberg E, et al. 2009. A global view of protein expression in human cells, tissues, and organs. Mol Syst Biol 5: 337.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 337
-
-
Ponten, F.1
Gry, M.2
Fagerberg, L.3
Lundberg, E.4
-
45
-
-
77649299348
-
An atlas of combinatorial transcriptional regulation in mouse and man
-
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, et al. 2010. An atlas of combinatorial transcriptional regulation in mouse and man. Cell 140: 744-52.
-
(2010)
Cell
, vol.140
, pp. 744-752
-
-
Ravasi, T.1
Suzuki, H.2
Cannistraci, C.V.3
Katayama, S.4
-
46
-
-
0025319004
-
New type of POU domain in germ line-specific protein Oct-4
-
Schöler HR, Ruppert S, Suzuki N, Chowdhury K, et al. 1990. New type of POU domain in germ line-specific protein Oct-4. Nature 344: 435-9.
-
(1990)
Nature
, vol.344
, pp. 435-439
-
-
Schöler, H.R.1
Ruppert, S.2
Suzuki, N.3
Chowdhury, K.4
-
47
-
-
0038054341
-
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, et al. 2003. PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet 34: 267-73.
-
(2003)
Nat Genet
, vol.34
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
-
48
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, et al. 2005. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 102: 15545-50.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
-
50
-
-
79953267538
-
A bioinformatic assay for pluripotency in human cells
-
Müller FJ, Schuldt BM, Williams R, Mason D, et al. 2011. A bioinformatic assay for pluripotency in human cells. Nat Methods 8: 315-7.
-
(2011)
Nat Methods
, vol.8
, pp. 315-317
-
-
Müller, F.J.1
Schuldt, B.M.2
Williams, R.3
Mason, D.4
-
51
-
-
77950644737
-
A global map of human gene expression
-
Lukk M, Kapushesky M, Nikkila J, Parkinson H, et al. 2010. A global map of human gene expression. Nat Biotechnol 28: 322-4.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 322-324
-
-
Lukk, M.1
Kapushesky, M.2
Nikkila, J.3
Parkinson, H.4
-
52
-
-
0000325341
-
On lines and planes of closest fit to systems of points in space
-
Pearson K. 1901. On lines and planes of closest fit to systems of points in space. Philos Mag Ser 6: 559-72.
-
(1901)
Philos Mag Ser
, vol.6
, pp. 559-572
-
-
Pearson, K.1
-
53
-
-
0033592606
-
Learning the parts of objects by non-negative matrix factorization
-
Lee DD, Seung HS. 1999. Learning the parts of objects by non-negative matrix factorization. Nature 401: 788-91.
-
(1999)
Nature
, vol.401
, pp. 788-791
-
-
Lee, D.D.1
Seung, H.S.2
-
54
-
-
0037810449
-
Subsystem identification through dimensionality reduction of large-scale gene expression data
-
Kim PM, Tidor B. 2003. Subsystem identification through dimensionality reduction of large-scale gene expression data. Genome Res 13: 1706-18.
-
(2003)
Genome Res
, vol.13
, pp. 1706-1718
-
-
Kim, P.M.1
Tidor, B.2
-
56
-
-
77952699848
-
Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs
-
Hanna J, Cheng AW, Saha K, Kim J, et al. 2010. Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs. Proc Natl Acad Sci USA 107: 9222-7.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 9222-9227
-
-
Hanna, J.1
Cheng, A.W.2
Saha, K.3
Kim, J.4
-
57
-
-
66049117813
-
Naive and primed pluripotent states
-
Nichols J, Smith A. 2009. Naive and primed pluripotent states. Cell Stem Cell 4: 487-92.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 487-492
-
-
Nichols, J.1
Smith, A.2
-
58
-
-
77956260872
-
Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells
-
Guenther MG, Frampton GM, Soldner F, Hockemeyer D, et al. 2010. Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells. Cell Stem Cell 7: 249-57.
-
(2010)
Cell Stem Cell
, vol.7
, pp. 249-257
-
-
Guenther, M.G.1
Frampton, G.M.2
Soldner, F.3
Hockemeyer, D.4
-
59
-
-
79956308473
-
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
-
Pastor WA, Pape UJ, Huang Y, Henderson HR, et al. 2011. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature 473: 394-7.
-
(2011)
Nature
, vol.473
, pp. 394-397
-
-
Pastor, W.A.1
Pape, U.J.2
Huang, Y.3
Henderson, H.R.4
-
60
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl BD, Allis CD. 2000. The language of covalent histone modifications. Nature 403: 41-5.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
61
-
-
79952696158
-
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets
-
Cheng C, Yan KK, Yip KY, Rozowsky J, et al. 2011. A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets. Genome Biol 12: R15.
-
(2011)
Genome Biol
, vol.12
-
-
Cheng, C.1
Yan, K.K.2
Yip, K.Y.3
Rozowsky, J.4
-
62
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, et al. 2011. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster Nature 471: 480-5.
-
(2011)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
Alekseyenko, A.A.2
Schwartz, Y.B.3
Minoda, A.4
-
63
-
-
79551665440
-
A functionally characterized test set of human induced pluripotent stem cells
-
Boulting GL, Kiskinis E, Croft GF, Amoroso MW, et al. 2011. A functionally characterized test set of human induced pluripotent stem cells. Nat Biotechnol 29: 279-86.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 279-286
-
-
Boulting, G.L.1
Kiskinis, E.2
Croft, G.F.3
Amoroso, M.W.4
-
64
-
-
0004104697
-
-
3rd edn., London, England: Longmans, Green and Co
-
Mill JS. 1884. A System of Logic Ratiocinative and Inductive, Being a Connected View of the Principles of Evidence, and the Methods of Scientific Investigation. 3rd edn., London, England: Longmans, Green and Co. p. 622.
-
(1884)
A System of Logic Ratiocinative and Inductive, Being a Connected View of the Principles of Evidence, and the Methods of Scientific Investigation
, pp. 622
-
-
Mill, J.S.1
-
65
-
-
10044248411
-
-
A consistency-based model selection for one-class classification. Proceedings of the 17th International Conference on Pattern Recognition (ICPR'04), Cambridge, England.
-
Tax DMJ, Müller KR. 2004. A consistency-based model selection for one-class classification. Proceedings of the 17th International Conference on Pattern Recognition (ICPR'04), Cambridge, England.
-
(2004)
-
-
Tax, D.M.J.1
Müller, K.R.2
-
66
-
-
79956020510
-
Assessing affymetrix GeneChip microarray quality
-
McCall MN, Murakami PN, Lukk M, Huber W, et al. 2011. Assessing affymetrix GeneChip microarray quality. BMC Bioinf 12: 137.
-
(2011)
BMC Bioinf
, vol.12
, pp. 137
-
-
McCall, M.N.1
Murakami, P.N.2
Lukk, M.3
Huber, W.4
-
67
-
-
77956873627
-
Tackling the widespread and critical impact of batch effects in high-throughput data
-
Leek JT, Scharpf RB, Bravo HC, Simcha D, et al. 2010. Tackling the widespread and critical impact of batch effects in high-throughput data. Nat Rev Genet 11: 733-9.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 733-739
-
-
Leek, J.T.1
Scharpf, R.B.2
Bravo, H.C.3
Simcha, D.4
-
68
-
-
33845432928
-
Adjusting batch effects in microarray expression data using empirical Bayes methods
-
Johnson WE, Li C, Rabinovic A. 2007. Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8: 118-27.
-
(2007)
Biostatistics
, vol.8
, pp. 118-127
-
-
Johnson, W.E.1
Li, C.2
Rabinovic, A.3
-
69
-
-
77955131271
-
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data
-
Luo J, Schumacher M, Scherer A, Sanoudou D, et al. 2010. A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data. Pharmacogenomics J 10: 278-91.
-
(2010)
Pharmacogenomics J
, vol.10
, pp. 278-291
-
-
Luo, J.1
Schumacher, M.2
Scherer, A.3
Sanoudou, D.4
-
70
-
-
67649197934
-
Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction
-
Cheng C, Shen K, Song C, Luo J, et al. 2009. Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction. Bioinformatics 25: 1655-61.
-
(2009)
Bioinformatics
, vol.25
, pp. 1655-1661
-
-
Cheng, C.1
Shen, K.2
Song, C.3
Luo, J.4
-
71
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A, Mikkelsen TS, Gu H, Wernig M, et al. 2008. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454: 766-70.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
-
72
-
-
79251575001
-
Equivalence of conventionally-derived and parthenote-derived human embryonic stem cells
-
Harness JV, Turovets NA, Seiler MJ, Nistor G, et al. 2011. Equivalence of conventionally-derived and parthenote-derived human embryonic stem cells. PLoS One 6: e14499.
-
(2011)
PLoS One
, vol.6
-
-
Harness, J.V.1
Turovets, N.A.2
Seiler, M.J.3
Nistor, G.4
-
73
-
-
80054708708
-
-
The PageRank Citation Ranking: Bringing Order to the Web. Technical Report. Stanford InfoLab.
-
Page L, Brin S, Motwani R, Winograd T. 1998. The PageRank Citation Ranking: Bringing Order to the Web. Technical Report. Stanford InfoLab.
-
(1998)
-
-
Page, L.1
Brin, S.2
Motwani, R.3
Winograd, T.4
-
74
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
Takahashi K, Yamanaka S. 2006. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126: 663-76.
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
|