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Volumn 12, Issue , 2011, Pages

Assessing affymetrix GeneChip microarray quality

Author keywords

[No Author keywords available]

Indexed keywords

AFFYMETRIX GENECHIP; BIOLOGICAL SCIENCE; CLINICAL SETTINGS; HIGH-THROUGHPUT TECHNOLOGIES; MICROARRAY TECHNOLOGIES; PRECISE DEFINITION; QUALITY METRICES; SECONDARY DATA ANALYSIS;

EID: 79956020510     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-137     Document Type: Article
Times cited : (68)

References (27)
  • 4
    • 84888281955 scopus 로고    scopus 로고
    • American Society of Quality
    • American Society of Quality. , http://asq.org/glossary/index.html
  • 5
    • 35748952199 scopus 로고    scopus 로고
    • A gene expression bar code for microarray data
    • 10.1038/nmeth1102, 17906632
    • Zilliox M, Irizarry R. A gene expression bar code for microarray data. Nature Methods 2007, 4:911-913. 10.1038/nmeth1102, 17906632.
    • (2007) Nature Methods , vol.4 , pp. 911-913
    • Zilliox, M.1    Irizarry, R.2
  • 6
    • 78651271261 scopus 로고    scopus 로고
    • The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
    • 3013751, 21177656
    • McCall M, Uppal K, Jaffee H, Zilliox M, Irizarry R. The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. Nucleic Acids Research 2011, 39(SUPPL 1):D1011. 3013751, 21177656.
    • (2011) Nucleic Acids Research , vol.39 , Issue.SUPPL 1
    • McCall, M.1    Uppal, K.2    Jaffee, H.3    Zilliox, M.4    Irizarry, R.5
  • 7
    • 60849126175 scopus 로고    scopus 로고
    • Clinical utility of microarrays: Current status, existing challenges and future outlook
    • 10.2174/138920208786241199, 2691672, 19506735
    • Li X, Quigg R, Zhou J, Gu W, Rao P, Reed E. Clinical utility of microarrays: Current status, existing challenges and future outlook. Current genomics 2008, 9(7):466. 10.2174/138920208786241199, 2691672, 19506735.
    • (2008) Current genomics , vol.9 , Issue.7 , pp. 466
    • Li, X.1    Quigg, R.2    Zhou, J.3    Gu, W.4    Rao, P.5    Reed, E.6
  • 9
    • 46049110099 scopus 로고    scopus 로고
    • TiGER: a database for tissue-specific gene expression and regulation
    • 10.1186/1471-2105-9-271, 2438328, 18541026
    • Liu X, Yu X, Zack D, Zhu H, Qian J. TiGER: a database for tissue-specific gene expression and regulation. BMC bioinformatics 2008, 9:271. 10.1186/1471-2105-9-271, 2438328, 18541026.
    • (2008) BMC bioinformatics , vol.9 , pp. 271
    • Liu, X.1    Yu, X.2    Zack, D.3    Zhu, H.4    Qian, J.5
  • 10
    • 33644874572 scopus 로고    scopus 로고
    • BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
    • 1347499, 16381946
    • Ogasawara O, Otsuji M, Watanabe K, Iizuka T, Tamura T, Hishiki T, Kawamoto S, Okubo K. BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression. Nucleic Acids Research 2006, 34(SUPPL 1):D628. 1347499, 16381946.
    • (2006) Nucleic Acids Research , vol.34 , Issue.SUPPL 1
    • Ogasawara, O.1    Otsuji, M.2    Watanabe, K.3    Iizuka, T.4    Tamura, T.5    Hishiki, T.6    Kawamoto, S.7    Okubo, K.8
  • 12
    • 77952796368 scopus 로고    scopus 로고
    • TiSGeD: a database for tissue-specific genes
    • 10.1093/bioinformatics/btq109, 2859128, 20223836
    • Xiao S, Zhang C, Zou Q, Ji Z. TiSGeD: a database for tissue-specific genes. Bioinformatics 2010, 26(9):1273. 10.1093/bioinformatics/btq109, 2859128, 20223836.
    • (2010) Bioinformatics , vol.26 , Issue.9 , pp. 1273
    • Xiao, S.1    Zhang, C.2    Zou, Q.3    Ji, Z.4
  • 13
    • 0035684378 scopus 로고    scopus 로고
    • A model for measurement error for gene expression arrays
    • 10.1089/106652701753307485, 11747612
    • Rocke D, Durbin B. A model for measurement error for gene expression arrays. Journal of Computational Biology 2001, 8(6):557-569. 10.1089/106652701753307485, 11747612.
    • (2001) Journal of Computational Biology , vol.8 , Issue.6 , pp. 557-569
    • Rocke, D.1    Durbin, B.2
  • 14
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • 10.1093/bioinformatics/18.SUPPL_1.S96, 12169536
    • Huber W, Von Heydebreck A, Sultmann H, Poustka A, Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002, 18(SUPPL 1):S96. 10.1093/bioinformatics/18.SUPPL_1.S96, 12169536.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL 1
    • Huber, W.1    Von Heydebreck, A.2    Sultmann, H.3    Poustka, A.4    Vingron, M.5
  • 15
    • 48249152355 scopus 로고    scopus 로고
    • A statistical framework for the analysis of microarray probe-level data
    • Wu Z, Irizarry R. A statistical framework for the analysis of microarray probe-level data. Ann Appl Stat 2007, 1(2):333-357.
    • (2007) Ann Appl Stat , vol.1 , Issue.2 , pp. 333-357
    • Wu, Z.1    Irizarry, R.2
  • 16
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • 10.1093/biostatistics/4.2.249, 12925520
    • Irizarry R, Hobbs B, Collin F, Beazer-Barclay Y, Antonellis K, Scherf U, Speed T. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249. 10.1093/biostatistics/4.2.249, 12925520.
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249
    • Irizarry, R.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.4    Antonellis, K.5    Scherf, U.6    Speed, T.7
  • 19
    • 77749291770 scopus 로고    scopus 로고
    • Frozen robust multiarray analysis (fRMA)
    • 10.1093/biostatistics/kxp059, 2830579, 20097884
    • McCall M, Bolstad B, Irizarry R. Frozen robust multiarray analysis (fRMA). Biostatistics 2010, 11(2):242. 10.1093/biostatistics/kxp059, 2830579, 20097884.
    • (2010) Biostatistics , vol.11 , Issue.2 , pp. 242
    • McCall, M.1    Bolstad, B.2    Irizarry, R.3
  • 22
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • 10.1093/nar/30.1.207, 99122, 11752295
    • Edgar R, Domrachev M, Lash A. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research 2002, 30:207. 10.1093/nar/30.1.207, 99122, 11752295.
    • (2002) Nucleic Acids Research , vol.30 , pp. 207
    • Edgar, R.1    Domrachev, M.2    Lash, A.3
  • 24
    • 68549090980 scopus 로고    scopus 로고
    • Importing arrayexpress datasets into r/bioconductor
    • 10.1093/bioinformatics/btp354, 2723004, 19505942
    • Kauffmann A, Rayner T, Parkinson H, Kapushesky M, Lukk M, Brazma A, Huber W. Importing arrayexpress datasets into r/bioconductor. Bioinformatics 2009, 25(16):2092. 10.1093/bioinformatics/btp354, 2723004, 19505942.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2092
    • Kauffmann, A.1    Rayner, T.2    Parkinson, H.3    Kapushesky, M.4    Lukk, M.5    Brazma, A.6    Huber, W.7
  • 25
    • 59549093642 scopus 로고    scopus 로고
    • ArrayQualityMetrics-a bioconductor package for quality assessment of microarray data
    • 10.1093/bioinformatics/btn647, 2639074, 19106121
    • Kauffmann A, Gentleman R, Huber W. arrayQualityMetrics-a bioconductor package for quality assessment of microarray data. Bioinformatics 2009, 25(3):415. 10.1093/bioinformatics/btn647, 2639074, 19106121.
    • (2009) Bioinformatics , vol.25 , Issue.3 , pp. 415
    • Kauffmann, A.1    Gentleman, R.2    Huber, W.3
  • 26
    • 77549088298 scopus 로고    scopus 로고
    • Microarray data quality control improves the detection of differentially expressed genes
    • [NA], 10.1016/j.ygeno.2010.01.003, 20079422
    • Kauffmann A, Huber W. Microarray data quality control improves the detection of differentially expressed genes. Genomics 2010, 95:138-142. [NA], 10.1016/j.ygeno.2010.01.003, 20079422.
    • (2010) Genomics , vol.95 , pp. 138-142
    • Kauffmann, A.1    Huber, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.