Metagenes and molecular pattern discovery using matrix factorization

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 12, 2004, Pages 4164-4169

  Brunet, Jean Philippe ^a   Tamayo, Pablo ^a   Golub, Todd R ^a,b   Mesirov, Jill P ^a  

^a HARVARD UNIVERSITY   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANALYTIC METHOD; ARTICLE; DNA MICROARRAY; GENE; GENE EXPRESSION; INFORMATION PROCESSING; INTERMETHOD COMPARISON; LEUKEMIA; METAGENE; MODEL; MOLECULAR GENETICS; NONNEGATIVE MATRIX FACTORIZATION; PRIORITY JOURNAL; STOCHASTIC MODEL;

ALGORITHMS; CENTRAL NERVOUS SYSTEM NEOPLASMS; COMPUTATIONAL BIOLOGY; DATA INTERPRETATION, STATISTICAL; LEUKEMIA; MEDULLOBLASTOMA; MODELS, GENETIC; NEOPLASMS;

EID: 1642529511     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0308531101     Document Type: Article

References (15)

1. Eisen, M., Spellman, P., Brown, P. & Botstein, D. (1998) Proc. Natl. Acad. Sci. USA 95, 14863-14868.
2. Alizadeh, A. A., Eisen, M. B., Davis, R. E., Ma, C., Lossos, I. S., Rosenwald, A., Boldrick, J. C., Sabet, H., Tran, T., Yu, X., et al. (2000) Nature 403, 503-511.
3. Perou, C. M., Sorlie, T., Eisen, M. B., van de Rijn, M., Jeffrey, S. S., Rees, C. A., Pollack, J. R., Ross, D. T., Johnsen, H., Akslen, L. A., et al. (2000) Nature 406, 747-752.
4. Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Dmitrovsky, E., Lander, E. S. & Golub, T. R. (1999) Proc. Natl. Acad. Sci. USA 96, 2907-2912.
5. Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., et al. (1999) Science 286, 531-537.
6. Moloshok, T. D., Klevecz, R. R., Grant, J. D., Manion, F. J., Speier, W. F. 4th, & Ochs, M. F. (2002) Bioinformatics 18, 566-575.
7. Gasch, A. P. & Eisen, M. B. (2002) Genome Biol. 3, research0059.1-0059.22.
8. Alter, O., Brown, P. O. & Botstein, D. (2000) Proc. Natl. Acad. Sci. USA 97, 10101-10106.
9. Lee, D. D. & Seung, H. S. (1999) Nature 401, 788-793.
10. Lee, D. D. & Seung, H. S. (2001) Adv. Neural Info. Proc. Syst. 13, 556-562.
11. Monti, S., Tamayo, P., Golub, T. R. & Mesirov, J. P. (2003) Machine Learn. J. 52, 91-118.
12. Slonim, D. K., Tamayo, P., Mesirov, J. P., Golub, T. R. & Lander, E. S. (2000) Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, 263-272.
13. Pomeroy, S. L., Tamayo, P., Gaasenbeek, M., Sturla, L. M., Angelo, M., McLaughlin, M. E., Kim, J. Y., Goumnerova, L. C., Black, P. M., Lau, C., et al. (2002) Nature 415, 436-442.
14. Kim, P. M. & Tidor, B. (2003) Genome Res. 13, 1706-1718.
15. Heger, A. & Holm, L. (2003) Bioinformatics 19, Suppl., i130-i137.