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Volumn 53, Issue 10, 2011, Pages 800-813

Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker Discovery

Author keywords

Hydrolyzable tannin; Natural product; Pomegranate; SSR marker; Transcriptome

Indexed keywords

BIOACTIVITY; DNA; FATTY ACID; GENE; SHRUB; TANNIN;

EID: 80053514752     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2011.01073.x     Document Type: Article
Times cited : (69)

References (50)
  • 2
    • 0025581736 scopus 로고
    • The shikimate pathway - A metabolic tree with many branches
    • Bentley R (1990) The shikimate pathway - A metabolic tree with many branches. Crit. Rev. Biochem. Mol. Biol. 25, 307-384.
    • (1990) Crit. Rev. Biochem. Mol. Biol. , vol.25 , pp. 307-384
    • Bentley, R.1
  • 6
    • 28444466637 scopus 로고    scopus 로고
    • Identification of steroid hormones in pomegranate (Punica granatum) using HPLC and GC-mass spectrometry
    • Choi DW, Kim JY, Choi SH, Jung HS, Kim HJ, Cho SY, Kang CS, Chang SY (2006) Identification of steroid hormones in pomegranate (Punica granatum) using HPLC and GC-mass spectrometry. Food Chem. 96, 562-571.
    • (2006) Food Chem. , vol.96 , pp. 562-571
    • Choi, D.W.1    Kim, J.Y.2    Choi, S.H.3    Jung, H.S.4    Kim, H.J.5    Cho, S.Y.6    Kang, C.S.7    Chang, S.Y.8
  • 8
    • 33745946053 scopus 로고    scopus 로고
    • Vitamin synthesis in plants: Tocopherols and carotenoids.
    • DellaPenna D, Pogson BJ (2006) Vitamin synthesis in plants: Tocopherols and carotenoids. Annu. Rev. Plant Biol. 57, 711-738.
    • (2006) Annu. Rev. Plant Biol. , vol.57 , pp. 711-738
    • DellaPenna, D.1    Pogson, B.J.2
  • 9
    • 0030775733 scopus 로고    scopus 로고
    • Automated sizing of fluorescent-labelled simple sequence repeat (SSR) markers to assay genetic variation in soybean
    • Diwan N, Cregan P (1997) Automated sizing of fluorescent-labelled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor. Appl. Genet. 95, 723-733.
    • (1997) Theor. Appl. Genet. , vol.95 , pp. 723-733
    • Diwan, N.1    Cregan, P.2
  • 11
    • 0008711252 scopus 로고    scopus 로고
    • Characterization of certain steroid hormones in Punica granatum L. seeds
    • El Wahab S, El Fiki N, Mostafa F, Hassan A (1998) Characterization of certain steroid hormones in Punica granatum L. seeds. Bull. Fac. Pharm. 36, 11-15.
    • (1998) Bull. Fac. Pharm. , vol.36 , pp. 11-15
    • El Wahab, S.1    El Fiki, N.2    Mostafa, F.3    Hassan, A.4
  • 14
    • 0033788223 scopus 로고    scopus 로고
    • Antioxidant activity of pomegranate juice and its relationship with phenolic composition and processing
    • Gil MI, Tomas-Barberan FA, Hess-Pierce B, Holcroft DM, Kader AA (2000) Antioxidant activity of pomegranate juice and its relationship with phenolic composition and processing. J. Agric. Food Chem. 48, 4581-4589.
    • (2000) J. Agric. Food Chem. , vol.48 , pp. 4581-4589
    • Gil, M.I.1    Tomas-Barberan, F.A.2    Hess-Pierce, B.3    Holcroft, D.M.4    Kader, A.A.5
  • 17
    • 0000708080 scopus 로고
    • Enzymatic synthesis of gallotannins and related compounds
    • In: Stafford H, Ibrahim R, eds. Plenum Press, New York
    • Gross G (1992) Enzymatic synthesis of gallotannins and related compounds. In: Stafford H, Ibrahim R, eds. Phenolic Metabolism in Plant. Plenum Press, New York pp. 297-324.
    • (1992) Phenolic Metabolism in Plant. , pp. 297-324
    • Gross, G.1
  • 18
    • 0034736046 scopus 로고    scopus 로고
    • Advances in flavonoid research since 1992
    • Harborne JB, Williams CA (2000) Advances in flavonoid research since 1992. Phytochemistry 55, 481-504.
    • (2000) Phytochemistry , vol.55 , pp. 481-504
    • Harborne, J.B.1    Williams, C.A.2
  • 19
    • 51349096457 scopus 로고    scopus 로고
    • Multitargeted therapy of cancer by ellagitannins
    • Heber D (2008) Multitargeted therapy of cancer by ellagitannins. Cancer Lett. 269, 262-268.
    • (2008) Cancer Lett. , vol.269 , pp. 262-268
    • Heber, D.1
  • 20
    • 84897666217 scopus 로고    scopus 로고
    • Pomegranate: Botany, horticulture, breeding
    • In: Janick J, ed. John Wiley & Sons, Hoboken, NJ
    • Holland D, Hatib K, Bar-Ya'akov I (2009) Pomegranate: Botany, horticulture, breeding. In: Janick J, ed. Horticultural Reveiws. John Wiley & Sons, Hoboken, NJ .
    • (2009) Horticultural Reveiws
    • Holland, D.1    Hatib, K.2    Bar-Ya'akov, I.3
  • 21
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: A DNA sequence assembly program. Genome Res. 9, 868-877.
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 22
    • 0034778714 scopus 로고    scopus 로고
    • Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit
    • Jaakola L, Pirttilä A, Halonen M, Hohtola A (2001) Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit. Mol. Biotechnol. 19, 201-203.
    • (2001) Mol. Biotechnol. , vol.19 , pp. 201-203
    • Jaakola, L.1    Pirttilä, A.2    Halonen, M.3    Hohtola, A.4
  • 23
    • 84946045193 scopus 로고    scopus 로고
    • Postharvest biology and technology of pomegranates
    • In: Seeram N, Schulman R, Heber D, eds. Taylor and Francis, Boca Raton, FL
    • Kader AA (2006) Postharvest biology and technology of pomegranates. In: Seeram N, Schulman R, Heber D, eds. Pomegranates Ancient Roots to Modern Medicine. Taylor and Francis, Boca Raton, FL pp. 211-220.
    • (2006) Pomegranates Ancient Roots to Modern Medicine , pp. 211-220
    • Kader, A.A.1
  • 24
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 28
    • 11444257734 scopus 로고    scopus 로고
    • Developing pineapple fruit has a small transcriptome dominated by metallothionein
    • Moyle R, Fairbairn DJ, Ripi J, Crowe M, Botella JR (2005) Developing pineapple fruit has a small transcriptome dominated by metallothionein. J. Exp. Bot. 56, 101-112.
    • (2005) J. Exp. Bot. , vol.56 , pp. 101-112
    • Moyle, R.1    Fairbairn, D.J.2    Ripi, J.3    Crowe, M.4    Botella, J.R.5
  • 29
    • 0037310568 scopus 로고    scopus 로고
    • Oxidation of pentagalloylglucose to the ellagitannin, tellimagrandin II, by a phenol oxidase from Tellima grandiflora leaves
    • Niemetz R, Gross G (2003a) Oxidation of pentagalloylglucose to the ellagitannin, tellimagrandin II, by a phenol oxidase from Tellima grandiflora leaves. Phytochemistry 62, 301-306.
    • (2003) Phytochemistry , vol.62 , pp. 301-306
    • Niemetz, R.1    Gross, G.2
  • 30
    • 0344874161 scopus 로고    scopus 로고
    • Ellagitannin biosynthesis: Laccase-catalyzed dimerization of tellimagrandin II to cornusiin E in Tellima grandiflora
    • Niemetz R, Gross G (2003b) Ellagitannin biosynthesis: Laccase-catalyzed dimerization of tellimagrandin II to cornusiin E in Tellima grandiflora. Phytochemistry 64, 1197-1201.
    • (2003) Phytochemistry , vol.64 , pp. 1197-1201
    • Niemetz, R.1    Gross, G.2
  • 31
    • 23444432854 scopus 로고    scopus 로고
    • Enzymology of gallotannins and ellagitannin biosynthesis
    • Niemetz R, Gross G (2005) Enzymology of gallotannins and ellagitannin biosynthesis. Phytochemistry 66, 2001-2011.
    • (2005) Phytochemistry , vol.66 , pp. 2001-2011
    • Niemetz, R.1    Gross, G.2
  • 32
    • 62349122684 scopus 로고    scopus 로고
    • Substrate specificity of plant UDP-dependent glycosyltransferases predicted from crystal structures and homology modeling
    • Osmani SA, Bak S, Møller BL (2009) Substrate specificity of plant UDP-dependent glycosyltransferases predicted from crystal structures and homology modeling. Phytochemistry 70, 325-347.
    • (2009) Phytochemistry , vol.70 , pp. 325-347
    • Osmani, S.A.1    Bak, S.2    Møller, B.L.3
  • 33
    • 0036403449 scopus 로고    scopus 로고
    • Phytosterols in human nutrition
    • Ostlund R (2002) Phytosterols in human nutrition. Annu. Rev. Nutr. 22, 533-549.
    • (2002) Annu. Rev. Nutr. , vol.22 , pp. 533-549
    • Ostlund, R.1
  • 35
    • 33344460777 scopus 로고    scopus 로고
    • TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat
    • Pourcel L, Routaboul JM, Kerhoas L, Caboche M, Lepiniec L, Debeaujon I (2005) TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat. Plant Cell 17, 2966-2980.
    • (2005) Plant Cell , vol.17 , pp. 2966-2980
    • Pourcel, L.1    Routaboul, J.M.2    Kerhoas, L.3    Caboche, M.4    Lepiniec, L.5    Debeaujon, I.6
  • 38
    • 20144381777 scopus 로고    scopus 로고
    • In vitro antiproliferative, apoptotic and antioxidant activities of punicalagin, ellagic acid and a total pomegranate tannin extract are enhanced in combination with other polyphenols as found in pomegranate juice
    • Seeram NP, Adams LS, Henning SM, Niu Y, Zhang Y, Nair MG, Heber D (2005) In vitro antiproliferative, apoptotic and antioxidant activities of punicalagin, ellagic acid and a total pomegranate tannin extract are enhanced in combination with other polyphenols as found in pomegranate juice. J. Nutr. Biochem. 16, 360-367.
    • (2005) J. Nutr. Biochem. , vol.16 , pp. 360-367
    • Seeram, N.P.1    Adams, L.S.2    Henning, S.M.3    Niu, Y.4    Zhang, Y.5    Nair, M.G.6    Heber, D.7
  • 39
    • 77956976114 scopus 로고    scopus 로고
    • Pomegranates: A botanical perspective
    • In: Seeram N, Schulman R, Heber D, eds. Taylor and Francis group, Boca Raton, FL
    • Still D (2006) Pomegranates: A botanical perspective. In: Seeram N, Schulman R, Heber D, eds. Pomegranates Ancient Roots to Modern Medicine. Taylor and Francis group, Boca Raton, FL pp. 199-209.
    • (2006) Pomegranates Ancient Roots to Modern Medicine , pp. 199-209
    • Still, D.1
  • 40
    • 34447635890 scopus 로고    scopus 로고
    • The pomegranate: A new look of the fruit of paradise
    • Stover E, Mercure E (2007) The pomegranate: A new look of the fruit of paradise. Hortscience 42, 1088-1092.
    • (2007) Hortscience , vol.42 , pp. 1088-1092
    • Stover, E.1    Mercure, E.2
  • 42
    • 79951958564 scopus 로고    scopus 로고
    • The laccase multigene family in Arabidopsis thaliana: Towards addressing the mystery of their gene function(s)
    • Turlapati P, Kim KW, Davin L, Lewis N (2011) The laccase multigene family in Arabidopsis thaliana: Towards addressing the mystery of their gene function(s). Planta 23, 439-470.
    • (2011) Planta , vol.23 , pp. 439-470
    • Turlapati, P.1    Kim, K.W.2    Davin, L.3    Lewis, N.4
  • 43
    • 0742324892 scopus 로고    scopus 로고
    • Rapid dereplication of estrogenic compounds in pomegranate (Punica granatum) using on-line biochemical detection coupled to mass spectrometry
    • van Elswijk DA, Schobel UP, Lansky EP, Irth H, van der Greef J (2004) Rapid dereplication of estrogenic compounds in pomegranate (Punica granatum) using on-line biochemical detection coupled to mass spectrometry. Phytochemistry 65, 233-241.
    • (2004) Phytochemistry , vol.65 , pp. 233-241
    • van Elswijk, D.A.1    Schobel, U.P.2    Lansky, E.P.3    Irth, H.4    van der Greef, J.5
  • 44
    • 0037072486 scopus 로고    scopus 로고
    • Transcription factors controlling plant secondary metabolism: What regulates the regulators?
    • Vom Endt D, Kijne JW, Memelink J (2002) Transcription factors controlling plant secondary metabolism: What regulates the regulators? Phytochemistry 61, 107-114.
    • (2002) Phytochemistry , vol.61 , pp. 107-114
    • Vom Endt, D.1    Kijne, J.W.2    Memelink, J.3
  • 45
    • 77950676425 scopus 로고    scopus 로고
    • Apocarotenoids: Hormones, mycorrhizal metabolites and aroma volatiles
    • Walter M, Floss D, Strack D (2010) Apocarotenoids: Hormones, mycorrhizal metabolites and aroma volatiles. Planta 232, 1-17.
    • (2010) Planta , vol.232 , pp. 1-17
    • Walter, M.1    Floss, D.2    Strack, D.3
  • 46
    • 4944266971 scopus 로고    scopus 로고
    • Biosynthesis of gallic acid in Rhus typhina: Discrimination between alternative pathways from natural oxygen isotope abundance
    • Werner R, Rossmann A, Schwarz C, Bacher A, Schmidt H, Eisenreich W (2004) Biosynthesis of gallic acid in Rhus typhina: Discrimination between alternative pathways from natural oxygen isotope abundance. Phytochemistry 65, 2809-2813.
    • (2004) Phytochemistry , vol.65 , pp. 2809-2813
    • Werner, R.1    Rossmann, A.2    Schwarz, C.3    Bacher, A.4    Schmidt, H.5    Eisenreich, W.6
  • 47
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan - an integration platform for the signature-recognition methods in InterPro
    • Zdobnov EM, Apweiler R (2001) InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17, 847-848.
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 48
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino D, Birney E (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.1    Birney, E.2
  • 49
    • 77949511368 scopus 로고    scopus 로고
    • Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler
    • Zerbino D, McEwen G, Margulies E, Birney E (2009) Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. PLoS One 4, e8407.
    • (2009) PLoS One , vol.4
    • Zerbino, D.1    McEwen, G.2    Margulies, E.3    Birney, E.4


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