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Volumn 135, Issue 12, 2011, Pages

Confinement in nanopores can destabilize α-helix folding proteins and stabilize the β structures

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL CELLS; CHAPERONIN; CONFINED ENVIRONMENT; CONFINED PORES; CONFINING WALLS; CONFORMATIONAL TRANSITIONS; CURRENT THEORIES; ENTROPIC EFFECTS; ENZYME STABILIZATION; EXPERIMENTAL OBSERVATION; FOLDED STATE; FOLDING RATES; FREE ENERGY SURFACE; IN-SILICO; IN-VITRO; IN-VIVO; MOLECULAR DYNAMICS SIMULATIONS; NATIVE STATE; PARKINSONS DISEASE; PROTEIN STABILITY; THEORETICAL EXPLANATION;

EID: 80053512774     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3641482     Document Type: Article
Times cited : (19)

References (101)
  • 2
    • 0015859467 scopus 로고
    • 10.1126/science.181.4096.223
    • C. B. Anfinsen, Science 181, 223 (1973). 10.1126/science.181.4096.223
    • (1973) Science , vol.181 , pp. 223
    • Anfinsen, C.B.1
  • 8
    • 0035092041 scopus 로고    scopus 로고
    • Molecular confinement influences protein structure and enhances thermal protein stability
    • DOI 10.1110/ps.36201
    • D. K. Eggers and J. S. Valentine, Protein Sci. 10, 250 (2001). 10.1110/ps.36201 (Pubitemid 32229119)
    • (2001) Protein Science , vol.10 , Issue.2 , pp. 250-261
    • Eggers, D.K.1    Valentine, J.S.2
  • 10
    • 0035913902 scopus 로고    scopus 로고
    • Dual function of protein confinement in chaperonin-assisted protein folding
    • DOI 10.1016/S0092-8674(01)00517-7
    • A. Brinker, G. Pfeifer, M. J. Kemer, D. J. Naylor, F.-U. Hartl, and M. Hayer-Hartl, Cell 107, 223 (2001). 10.1016/S0092-8674(01)00517-7 (Pubitemid 33035948)
    • (2001) Cell , vol.107 , Issue.2 , pp. 223-233
    • Brinker, A.1    Pfeifer, G.2    Kerner, M.J.3    Naylor, D.J.4    Hartl F.Ulrich5    Hayer-Hartl, M.6
  • 14
    • 33746813983 scopus 로고    scopus 로고
    • How can biochemical reactions within cells differ from those in test tubes?
    • DOI 10.1242/jcs.03063
    • A. P. Minton, J. Cell Sci. 119, 2863 (2006). 10.1242/jcs.03063 (Pubitemid 44177864)
    • (2006) Journal of Cell Science , vol.119 , Issue.14 , pp. 2863-2869
    • Minton, A.P.1
  • 15
    • 0035938764 scopus 로고    scopus 로고
    • Pore network model of deactivation of immobolized glucose isomerase in packed-bed reactors I: Two-dimensional simulations at the particle level
    • DOI 10.1016/S0009-2509(00)00548-0, PII S0009250900005480
    • M. Dadvara, M. Sohrabia, and M. Sahimi, Chem. Eng. Sci. 56, 2803 (2001); 10.1016/S0009-2509(00)00548-0 (Pubitemid 32480852)
    • (2001) Chemical Engineering Science , vol.56 , Issue.8 , pp. 2803-2819
    • Dadvar, M.1    Sohrabi, M.2    Sahimi, M.3
  • 16
    • 0242498527 scopus 로고    scopus 로고
    • Pore network model of deactivation of immobilized glucose isomerase in packed-bed reactors. Part III: Multiscale modelling
    • DOI 10.1016/j.ces.2003.07.006
    • M. Dadvara, M. Sohrabia, and M. Sahimi, Chem. Eng. Sci. 58, 4935 (2003). 10.1016/j.ces.2003.07.006 (Pubitemid 37388137)
    • (2003) Chemical Engineering Science , vol.58 , Issue.22 , pp. 4935-4951
    • Dadvar, M.1    Sahimi, M.2
  • 17
    • 11144226737 scopus 로고    scopus 로고
    • Stabilization of enzymes in nanoporous materials for biosensor applications
    • DOI 10.1016/j.bios.2004.07.019, PII S095656630400332X
    • S. Sotiropoulou, V. Vamvakaki, and N. A. Chaniotakis, Biosens. Bioelectron. 20, 1674 (2005). 10.1016/j.bios.2004.07.019 (Pubitemid 40051259)
    • (2005) Biosensors and Bioelectronics , vol.20 , Issue.8 SPEC. ISSUE , pp. 1674-1679
    • Sotiropoulou, S.1    Vamvakaki, V.2    Chaniotakis, N.A.3
  • 19
    • 0035920531 scopus 로고    scopus 로고
    • Encapsulation of biomolecules in silica gels
    • DOI 10.1088/0953-8984/13/33/202, PII S095389840119990X
    • J. Livage, T. Coradin, and C. Roux, J. Phys. Condens. Matter 13, R673 (2001). 10.1088/0953-8984/13/33/202 (Pubitemid 32796789)
    • (2001) Journal of Physics Condensed Matter , vol.13 , Issue.33
    • Livage, J.1    Coradin, T.2    Roux, C.3
  • 23
    • 33846633309 scopus 로고    scopus 로고
    • Silicon carbide membranes for gas separation applications
    • DOI 10.1016/j.memsci.2006.11.027, PII S037673880600768X
    • B. Elyassi, M. Sahimi, and T. T. Tsotsis, J. Membr. Sci. 288, 290 (2007); 10.1016/j.memsci.2006.11.027 (Pubitemid 46186777)
    • (2007) Journal of Membrane Science , vol.288 , Issue.1-2 , pp. 290-297
    • Elyassi, B.1    Sahimi, M.2    Tsotsis, T.T.3
  • 26
    • 0242540367 scopus 로고    scopus 로고
    • Protein Folding: Importance of the Anfinsen Cage
    • DOI 10.1016/j.cub.2003.10.051
    • R. J. Ellis, Curr. Biol. 13, R881 (2003). 10.1016/j.cub.2003.10.051 (Pubitemid 37425198)
    • (2003) Current Biology , vol.13 , Issue.22
    • Ellis, R.J.1
  • 27
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • DOI 10.1126/science.289.5481.920
    • P. Nissen, J. Hansen, N. Ban, P. B. Moore, and T. A. Steitz, Science 289, 920 (2000). 10.1126/science.289.5481.920 (Pubitemid 30659940)
    • (2000) Science , vol.289 , Issue.5481 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 28
    • 33746377894 scopus 로고    scopus 로고
    • Protein misfolding, functional amyloid, and human disease
    • DOI 10.1146/annurev.biochem.75.101304.123901
    • F. Chiti and C. M. Dobson, Annu. Rev. Biochem. 75, 333 (2006); 10.1146/annurev.biochem.75.101304.123901 (Pubitemid 44118036)
    • (2006) Annual Review of Biochemistry , vol.75 , pp. 333-366
    • Chiti, F.1    Dobson, C.M.2
  • 30
    • 0347357617 scopus 로고    scopus 로고
    • Protein folding and misfolding
    • DOI 10.1038/nature02261
    • C. M. Dobson, Nature (London) 426, 884 (2003). 10.1038/nature02261 (Pubitemid 38056880)
    • (2003) Nature , vol.426 , Issue.6968 , pp. 884-890
    • Dobson, C.M.1
  • 36
    • 36749103188 scopus 로고    scopus 로고
    • Protein folding in confined and crowded environments
    • DOI 10.1016/j.abb.2007.07.013, PII S000398610700358X, Highlight Issue: Protein Folding
    • H.-X. Zhou, Arch. Biochem. Biophys. 130, 76 (2008). 10.1016/j.abb.2007. 07.013 (Pubitemid 350212847)
    • (2008) Archives of Biochemistry and Biophysics , vol.469 , Issue.1 , pp. 76-82
    • Zhou, H.-X.1
  • 37
    • 25444487734 scopus 로고    scopus 로고
    • Influence of macromolecular crowding upon the stability and state of association of proteins: Predictions and observations
    • DOI 10.1002/jps.20417
    • A. P. Minton, J. Pharm. Sci. 94, 1668 (2005). 10.1002/jps.20417 (Pubitemid 41360861)
    • (2005) Journal of Pharmaceutical Sciences , vol.94 , Issue.8 , pp. 1668-1675
    • Minton, A.P.1
  • 38
    • 1242338901 scopus 로고    scopus 로고
    • 10.1021/ar0302282
    • H.-X. Zhou, Acc. Chem. Res. 37, 123 (2004). 10.1021/ar0302282
    • (2004) Acc. Chem. Res. , vol.37 , pp. 123
    • Zhou, H.-X.1
  • 39
    • 0035949430 scopus 로고    scopus 로고
    • Stabilization of proteins in confined spaces
    • DOI 10.1021/bi0155504
    • H.-X. Zho and K. A. Dill, Biochemistry 40, 11289 (2001). 10.1021/bi0155504 (Pubitemid 32911271)
    • (2001) Biochemistry , vol.40 , Issue.38 , pp. 11289-11293
    • Zhou, H.-X.1    Dill, K.A.2
  • 44
    • 33750720952 scopus 로고    scopus 로고
    • A simple semiempirical model for the effect of molecular confinement upon the rate of protein folding
    • DOI 10.1021/bi061597j
    • H.-H. Manajit and A. P. Minton, Biochemistry 45, 13356 (2006); 10.1021/bi061597j (Pubitemid 44707695)
    • (2006) Biochemistry , vol.45 , Issue.44 , pp. 13356-13360
    • Hayer-Hartl, M.1    Minton, A.P.2
  • 46
    • 33344476423 scopus 로고    scopus 로고
    • Nanopore-protein interactions dramatically alter stability and yield of the native state in restricted spaces
    • DOI 10.1016/j.jmb.2005.12.048, PII S0022283605016220
    • M. S. Cheung and D. Thirumalai, J. Mol. Biol. 357, 632 (2006). 10.1016/j.jmb.2005.12.048 (Pubitemid 43290761)
    • (2006) Journal of Molecular Biology , vol.357 , Issue.2 , pp. 632-643
    • Cheung, M.S.1    Thirumalai, D.2
  • 47
    • 41049107127 scopus 로고    scopus 로고
    • Molecular simulation of protein dynamics in nanopores. I. Stability and folding
    • DOI 10.1063/1.2894299
    • L. Javidpour, M. R. Rahimi Tabar, and M. Sahimi, J. Chem. Phys. 128, 115105 (2008); 10.1063/1.2894299 (Pubitemid 351423250)
    • (2008) Journal of Chemical Physics , vol.128 , Issue.11 , pp. 115105
    • Javidpour, L.1    Tabar, M.R.R.2    Sahimi, M.3
  • 49
    • 0023812695 scopus 로고
    • 10.1126/science.3043666
    • L. Regan and W. F. DeGrado, Science 241, 976 (1988). 10.1126/science. 3043666
    • (1988) Science , vol.241 , pp. 976
    • Regan, L.1    Degrado, W.F.2
  • 50
    • 0030601851 scopus 로고    scopus 로고
    • Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein
    • DOI 10.1006/jmbi.1996.0578
    • Z. Guo and D. Thirumalai, J. Mol. Biol. 263, 323 (1996). 10.1006/jmbi.1996.0578 (Pubitemid 26363091)
    • (1996) Journal of Molecular Biology , vol.263 , Issue.2 , pp. 323-343
    • Guo, Z.1    Thirumalai, D.2
  • 51
    • 0027503403 scopus 로고
    • 10.1002/pro.5560020508
    • S. Sun, Protein Sci. 2, 762 (1993); 10.1002/pro.5560020508
    • (1993) Protein Sci. , vol.2 , pp. 762
    • Sun, S.1
  • 54
    • 0035882559 scopus 로고    scopus 로고
    • α-helix formation: Discontinuous molecular dynamics on an intermediate-resolution protein model
    • DOI 10.1002/prot.1100
    • A. V. Smith and C. K. Hall, Proteins 44, 344 (2001); 10.1002/prot.1100 (Pubitemid 32702244)
    • (2001) Proteins: Structure, Function and Genetics , vol.44 , Issue.3 , pp. 344-360
    • Smith, A.V.1    Hall, C.K.2
  • 55
    • 0035882537 scopus 로고    scopus 로고
    • Assembly of a tetrameric α-helical bundle: Computer simulations on an intermediate-resolution protein model
    • DOI 10.1002/prot.1103
    • A. V. Smith and C. K. Hall, Proteins 44, 376 (2001); 10.1002/prot.1103 (Pubitemid 32702247)
    • (2001) Proteins: Structure, Function and Genetics , vol.44 , Issue.3 , pp. 376-391
    • Smith, A.V.1    Hall, C.K.2
  • 56
    • 0035823222 scopus 로고    scopus 로고
    • Protein refolding versus aggregation: Computer simulations on an intermediate-resolution protein model
    • DOI 10.1006/jmbi.2001.4845
    • A. V. Smith and C. K. Hall, J. Mol. Biol. 312, 187 (2001); 10.1006/jmbi.2001.4845 (Pubitemid 32835686)
    • (2001) Journal of Molecular Biology , vol.312 , Issue.1 , pp. 187-202
    • Smith, A.V.1    Hall, C.K.2
  • 57
    • 7244253280 scopus 로고    scopus 로고
    • Solvent effects on the conformational transition of a model polyalanine peptide
    • DOI 10.1110/ps.04701304
    • H. D. Nguyen, A. J. Marchut, and C. K. Hall, Protein Sci. 13, 2909 (2004); 10.1110/ps.04701304 (Pubitemid 39431254)
    • (2004) Protein Science , vol.13 , Issue.11 , pp. 2909-2924
    • Nguyen, H.D.1    Marchut, A.J.2    Hall, C.K.3
  • 58
    • 33747032067 scopus 로고    scopus 로고
    • Spontaneous formation of annular structures observed in molecular dynamics simulations of polyglutamine peptides
    • DOI 10.1016/j.compbiolchem.2006.01.003, PII S1476927106000077
    • A. J. Marchut and C. K. Hall, Comput. Biol. Chem. 30, 215 (2006). 10.1016/j.compbiolchem.2006.01.003 (Pubitemid 44208731)
    • (2006) Computational Biology and Chemistry , vol.30 , Issue.3 , pp. 215-218
    • Marchut, A.J.1    Hall, C.K.2
  • 60
    • 36149044755 scopus 로고
    • 10.1088/0305-4470/11/8/008
    • D. C. Rapaport, J. Phys. A 11, L213 (1978); 10.1088/0305-4470/11/8/008
    • (1978) J. Phys. A , vol.11 , pp. 213
    • Rapaport, D.C.1
  • 61
    • 0000439253 scopus 로고
    • 10.1063/1.438770
    • D. C. Rapaport, J. Chem. Phys. 71, 3299 (1979); 10.1063/1.438770
    • (1979) J. Chem. Phys. , vol.71 , pp. 3299
    • Rapaport, D.C.1
  • 63
    • 0031161658 scopus 로고    scopus 로고
    • Molecular dynamics for polymeric fluids using discontinuous potentials
    • DOI 10.1006/jcph.1996.5510, PII S0021999196955102
    • S. W. Smith, C. K. Hall, and B. D. Freeman, J. Comput. Phys. 134, 16 (1997). 10.1006/jcph.1996.5510 (Pubitemid 127175539)
    • (1997) Journal of Computational Physics , vol.134 , Issue.1 , pp. 16-30
    • Smith, S.W.1    Hall, C.K.2    Freeman, B.D.3
  • 73
    • 34147112824 scopus 로고    scopus 로고
    • Structure and energetics of the hydronium hydration shells
    • DOI 10.1021/jp068960g
    • O. Markovitch and N. Agmon, J. Phys. Chem. A 111, 2253 (2007); 10.1021/jp068960g (Pubitemid 46573427)
    • (2007) Journal of Physical Chemistry A , vol.111 , Issue.12 , pp. 2253-2256
    • Markovitch, O.1    Agmon, N.2
  • 74
    • 26444561843 scopus 로고    scopus 로고
    • Cooperative effects in hydrogen-bonding of protein secondary structure elements: A systematic analysis of crystal data using secbase
    • DOI 10.1002/prot.20613
    • O. Koch, M. Bocola, and G. Klebe, Proteins: Struct., Funct., Bioinf. 61, 310 (2005). 10.1002/prot.20613 (Pubitemid 41429138)
    • (2005) Proteins: Structure, Function and Genetics , vol.61 , Issue.2 , pp. 310-317
    • Koch, O.1    Bocola, M.2    Klebe, G.3
  • 86
    • 0034992527 scopus 로고    scopus 로고
    • 10.1379/1466-1268(2001)0060126:IOTOTM2.0.CO;2
    • R. I. Viner and J. S. Clegg, Cell Stress Chaperones 6, 126 (2001); 10.1379/1466-1268(2001)0060126:IOTOTM2.0.CO;2
    • (2001) Cell Stress Chaperones , vol.6 , pp. 126
    • Viner, R.I.1    Clegg, J.S.2
  • 87
    • 0035198188 scopus 로고    scopus 로고
    • Osmolytes as modulators of conformational changes in serpins
    • DOI 10.1515/BC.2001.194
    • M. K. Chow, G. L. Devlin, and S. P. Bottomley, J. Biol. Chem. 382, 1593 (2001); 10.1515/BC.2001.194 (Pubitemid 33107701)
    • (2001) Biological Chemistry , vol.382 , Issue.11 , pp. 1593-1599
    • Chow, M.K.M.1    Devlin, G.L.2    Bottomley, S.P.3
  • 90
    • 33947197428 scopus 로고    scopus 로고
    • Thermal destabilization of stem bromelain by trehalose
    • DOI 10.1007/s10930-006-9052-1
    • S. Habib, M. A. Khan, and H. Younus, Protein 26, 117 (2007); 10.1007/s10930-006-9052-1 (Pubitemid 46434839)
    • (2007) Protein Journal , vol.26 , Issue.2 , pp. 117-124
    • Habib, S.1    Khan, M.A.2    Younus, H.3
  • 96
    • 0037040878 scopus 로고    scopus 로고
    • Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II
    • DOI 10.1074/jbc.M110429200
    • D. M. Hatters, A. P. Minton, and G. J. Howlett, J. Biol. Chem. 277, 7824 (2002); 10.1074/jbc.M110429200 (Pubitemid 34968230)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.10 , pp. 7824-7830
    • Hatters, D.M.1    Minton, A.P.2    Howlett, G.J.3
  • 97
    • 36849036973 scopus 로고    scopus 로고
    • Misfolding of amyloidogenic proteins at membrane surfaces: The impact of macromolecular crowding
    • DOI 10.1021/ja076059o
    • M. Bokvist and G. Grbner, J. Am. Chem. Soc. 129, 14848 (2007); 10.1021/ja076059o (Pubitemid 350230696)
    • (2007) Journal of the American Chemical Society , vol.129 , Issue.48 , pp. 14848-14849
    • Bokvist, M.1    Grobner, G.2
  • 98
    • 0037181497 scopus 로고    scopus 로고
    • Accelerated α-synuclein fibrillation in crowded milieu
    • DOI 10.1016/S0014-5793(02)02446-8, PII S0014579302024468
    • V. N. Uversky, E. M. Cooper, K. S. Bower, J. Li, and A. L. Fink, FEBS Lett. 515, 99 (2002); 10.1016/S0014-5793(02)02446-8 (Pubitemid 34273905)
    • (2002) FEBS Letters , vol.515 , Issue.1-3 , pp. 99-103
    • Uversky, V.N.1    M. Cooper, E.2    Bower, K.S.3    Li, J.4    Fink, A.L.5
  • 99
    • 0037177250 scopus 로고    scopus 로고
    • Molecular crowding accelerates fibrillization of α-synuclein: Could an increase in the cytoplasmic protein concentration induce Parkinson's disease?
    • DOI 10.1021/bi0120906
    • M. D. Shtilerman, T. T. Ding, and P. T. Lansbury, Biochemistry 41, 3855 (2002). 10.1021/bi0120906 (Pubitemid 34251023)
    • (2002) Biochemistry , vol.41 , Issue.12 , pp. 3855-3860
    • Shtilerman, M.D.1    Ding, T.T.2    Lansbury Jr., P.T.3


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