-
1
-
-
77950628781
-
The recombination landscape of the zebra finch Taeniopygia guttata genome
-
11 co-authors
-
Backström N, Forstmeier W, Schielzeth H, et al. 11 co-authors. 2010. The recombination landscape of the zebra finch Taeniopygia guttata genome. Genome Res. 20:485-495.
-
(2010)
Genome Res.
, vol.20
, pp. 485-495
-
-
Backström, N.1
Forstmeier, W.2
Schielzeth, H.3
-
2
-
-
34548499987
-
Phylogenetic relationships and divergence times of Charadriiformes genera: Multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds
-
DOI 10.1098/rsbl.2006.0606, PII F102V21Q8101GRP3
-
Baker AJ, Pereira SL, Paton TA. 2007. Phylogenetic relationships and divergence times of Charadriiformes genera: multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds. Biol Lett. 3:205-209. (Pubitemid 351878154)
-
(2007)
Biology Letters
, vol.3
, Issue.2
, pp. 205-209
-
-
Baker, A.J.1
Pereira, S.L.2
Paton, T.A.3
-
3
-
-
34548128406
-
SNP discovery via 454 transcriptome sequencing
-
DOI 10.1111/j.1365-313X.2007.03193.x
-
Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS. 2007. SNP discovery via 454 transcriptome sequencing. Plant J. 51:910-918. (Pubitemid 47301664)
-
(2007)
Plant Journal
, vol.51
, Issue.5
, pp. 910-918
-
-
Barbazuk, W.B.1
Emrich, S.J.2
Chen, H.D.3
Li, L.4
Schnable, P.S.5
-
4
-
-
3342978151
-
Phylogeny and diversification of the largest avian radiation
-
DOI 10.1073/pnas.0401892101
-
Barker FK, Cibois A, Schikler P, Feinstein J, Cracraft J. 2004. Phylogeny and diversification of the largest avian radiation. Proc Natl Acad Sci U S A. 101:11040-11045. (Pubitemid 38992336)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.30
, pp. 11040-11045
-
-
Barker, F.K.1
Cibois, A.2
Schikler, P.3
Feinstein, J.4
Cracraft, J.5
-
5
-
-
2942684863
-
The decline of isochores in mammals: An assessment of the GC-content variation along the mammalian phylogeny
-
Belle E, Galtier N, Duret L, Eyre-Walker A. 2004. The decline of isochores in mammals: an assessment of the GC-content variation along the mammalian phylogeny. J Mol Evol. 58:653-660.
-
(2004)
J Mol Evol.
, vol.58
, pp. 653-660
-
-
Belle, E.1
Galtier, N.2
Duret, L.3
Eyre-Walker, A.4
-
6
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
DOI 10.1093/molbev/msl150
-
Benton MJ, Donoghue PCJ. 2007. Paleontological evidence to date the tree of life. Mol Biol Evol. 24:26-53. (Pubitemid 46026279)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.1
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.J.2
-
7
-
-
20444491634
-
A review of long-branch attraction
-
DOI 10.1111/j.1096-0031.2005.00059.x
-
Bergsten J. 2005. A review of long-branch attraction. Cladistics 21:163-193. (Pubitemid 40817232)
-
(2005)
Cladistics
, vol.21
, Issue.2
, pp. 163-193
-
-
Bergsten, J.1
-
8
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi G. 2000. Isochores and the evolutionary genomics of vertebrates. Gene. 241:3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
9
-
-
47249122561
-
A site-and time-heterogeneous model of amino acid replacement
-
Blanquart S, Lartillot N. 2008. A site-and time-heterogeneous model of amino acid replacement. Mol Biol Evol. 25:842-858.
-
(2008)
Mol Biol Evol.
, vol.25
, pp. 842-858
-
-
Blanquart, S.1
Lartillot, N.2
-
10
-
-
36849143183
-
The World's oldest songbirds
-
Boles WE. 1995. The World's oldest songbirds. Nature 374:21-22.
-
(1995)
Nature
, vol.374
, pp. 21-22
-
-
Boles, W.E.1
-
11
-
-
0030682484
-
Comparative approaches to the avian song system
-
DOI 10.1002/(SICI)1097-4695(19971105)33:5<517::AID-NEU3>3.0.CO;2-7
-
Brenowitz EA. 1997. Comparative approaches to the avian song system. J Neurobiol. 33:517-531. (Pubitemid 27456450)
-
(1997)
Journal of Neurobiology
, vol.33
, Issue.5
, pp. 517-531
-
-
Brenowitz, E.A.1
-
13
-
-
17744394753
-
Phylogenomics and the reconstruction of the tree of life
-
DOI 10.1038/nrg1603
-
Delsuc F, Brinkmann H, Philippe H. 2005. Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet. 6:361-375. (Pubitemid 40577180)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.5
, pp. 361-375
-
-
Delsuc, F.1
Brinkmann, H.2
Philippe, H.3
-
15
-
-
0033005856
-
Birdsong and human speech: Common themes and mechanisms
-
DOI 10.1146/annurev.neuro.22.1.567
-
Doupe AJ, Kuhl PK. 1999. Birdsong and human speech: common themes and mechanisms. Annu Rev Neurosci. 22:567-631. (Pubitemid 29144898)
-
(1999)
Annual Review of Neuroscience
, vol.22
, pp. 567-631
-
-
Doupe, A.J.1
Kuhl, P.K.2
-
16
-
-
34948890647
-
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
-
DOI 10.1101/gr.6395807
-
Dreszer TR, Wall GD, Haussler D, Pollard KS. 2007. Biased clustered substitutions in the human genome: the footprints of maledriven biased gene conversion. Genome Res. 17:1420-1430. (Pubitemid 47529426)
-
(2007)
Genome Research
, vol.17
, Issue.10
, pp. 1420-1430
-
-
Dreszer, T.R.1
Wall, G.D.2
Haussler, D.3
Pollard, K.S.4
-
17
-
-
44949198268
-
The impact of recombination on nucleotide substitutions in the human genome
-
Duret L, Arndt PF. 2008. The impact of recombination on nucleotide substitutions in the human genome. PLoS Genet. 4:e1000071.
-
(2008)
PLoS Genet.
, vol.4
-
-
Duret, L.1
Arndt, P.F.2
-
18
-
-
0036959203
-
Vanishing GC-rich isochores in mammalian genomes
-
Duret L, Semon M, Piganeau G, Mouchiroud D, Galtier N. 2002. Vanishing GC-rich isochores in mammalian genomes. Genetics. 162:1837-1847. (Pubitemid 36114667)
-
(2002)
Genetics
, vol.162
, Issue.4
, pp. 1837-1847
-
-
Duret, L.1
Semon, M.2
Piganeau, G.3
Mouchiroud, D.4
Galtier, N.5
-
19
-
-
53249100490
-
Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs
-
Dutheil J, Boussau B. 2008. Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs. BMC Evol Biol. 8:255.
-
(2008)
BMC Evol Biol.
, vol.8
, pp. 255
-
-
Dutheil, J.1
Boussau, B.2
-
20
-
-
33745955637
-
Bio++: A set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics
-
Dutheil J, Gaillard S, Bazin E, Glemin S, Ranwez V, Galtier N, Belkhir K. 2006. Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics. BMC Bioinformatics. 7:188.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 188
-
-
Dutheil, J.1
Gaillard, S.2
Bazin, E.3
Glemin, S.4
Ranwez, V.5
Galtier, N.6
Belkhir, K.7
-
21
-
-
0036700153
-
A genomic schism in birds revealed by phylogenetic analysis of DNA strings
-
DOI 10.1080/10635150290102285
-
Edwards SV, Fertil B, Giron A, Deschavanne PJ. 2002. A genomic schism in birds revealed by phylogenetic analysis of DNA strings. Syst Biol. 51:599-613. (Pubitemid 35197578)
-
(2002)
Systematic Biology
, vol.51
, Issue.4
, pp. 599-613
-
-
Edwards, S.V.1
Fertil, B.2
Giron, A.3
Deschavanne, P.J.4
-
22
-
-
77950630372
-
Evolutionary stasis: The stable chromosomes of birds
-
Ellegren H. Forthcoming. 2010. Evolutionary stasis: the stable chromosomes of birds. Trends Ecol Evol. 25:283-291.
-
(2010)
Trends Ecol Evol.
, vol.25
, pp. 283-291
-
-
Forthcoming, E.H.1
-
23
-
-
77958007159
-
Resolving postglacial phylogeography using high-throughput sequencing
-
Emerson KJ, Merz CR, Catchen JM, Hohenlohe PA, Cresko WA, Bradshaw WE, Holzapfel CM. 2010. Resolving postglacial phylogeography using high-throughput sequencing. PNAS 107:16196-16200.
-
(2010)
PNAS
, vol.107
, pp. 16196-16200
-
-
Emerson, K.J.1
Merz, C.R.2
Catchen, J.M.3
Hohenlohe, P.A.4
Cresko, W.A.5
Bradshaw, W.E.6
Holzapfel, C.M.7
-
24
-
-
33845585115
-
Diversification of Neoaves: Integration of molecular sequence data and fossils
-
DOI 10.1098/rsbl.2006.0523
-
Ericson PGP, Anderson CL, Britton T, Elzanowski A, Johansson US, Kallersjo M, Ohlson JI, Parsons TJ, Zuccon D, Mayr G. 2006. Diversification of neoaves: integration of molecular sequence data and fossils. Biol Lett. 2:543-547. (Pubitemid 44935427)
-
(2006)
Biology Letters
, vol.2
, Issue.4
, pp. 543-547
-
-
Ericson, P.G.P.1
Anderson, C.L.2
Britton, T.3
Elzanowski, A.4
Johansson, U.S.5
Kallersjo, M.6
Ohlson, J.I.7
Parsons, T.J.8
Zuccon, D.9
Mayr, G.10
-
25
-
-
43049130064
-
Hangin' on to our rocks 'n clocks: A reply to Brown et al
-
Ericson PGP, Anderson CL, Mayr G. 2007. Hangin' on to our rocks 'n clocks: a reply to Brown et al. Biol Lett. 3:260-261.
-
(2007)
Biol Lett.
, vol.3
, pp. 260-261
-
-
Ericson, P.G.P.1
Anderson, C.L.2
Mayr, G.3
-
26
-
-
0035407214
-
The evolution of isochores
-
DOI 10.1038/35080577
-
Eyre-Walker A, Hurst LD. 2001. The evolution of isochores. Nat Rev Genet. 2:549-555. (Pubitemid 33674028)
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.7
, pp. 549-555
-
-
Eyre-Walker, A.1
Hurst, L.D.2
-
27
-
-
46349089821
-
Molecular mapping of movement-associated areas in the avian brain: A motor theory for vocal learning origin
-
Feenders G, Liedvogel M, Rivas M, Zapka M, Horita H, Hara E, Wada K, Mouritsen H, Jarvis ED. 2008. Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin. PLoS One 3:e1768.
-
(2008)
PLoS One
, vol.3
-
-
Feenders, G.1
Liedvogel, M.2
Rivas, M.3
Zapka, M.4
Horita, H.5
Hara, E.6
Wada, K.7
Mouritsen, H.8
Jarvis, E.D.9
-
28
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool. 27:401-410.
-
(1978)
Syst Zool
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
29
-
-
0033004743
-
Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions
-
Foster PG, Hickey DA. 1999. Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. J Mol Evol. 48:284-290. (Pubitemid 29116073)
-
(1999)
Journal of Molecular Evolution
, vol.48
, Issue.3
, pp. 284-290
-
-
Foster, P.G.1
Hickey, D.A.2
-
30
-
-
16244391465
-
The quality of the fossil record of Mesozoic birds
-
DOI 10.1098/rspb.2004.2923
-
Fountaine TMR, Benton MJ, Dyke GJ, Nudds RL. 2005. The quality of the fossil record of mesozoic birds. Proc R Soc Lond Ser B Biol Sci. 272:289-294. (Pubitemid 40731836)
-
(2005)
Proceedings of the Royal Society B: Biological Sciences
, vol.272
, Issue.1560
, pp. 289-294
-
-
Fountaine, T.M.R.1
Benton, M.J.2
Dyke, G.J.3
Nudds, R.L.4
-
31
-
-
3242696303
-
Recombination, GC-content and the human pseudoautosomal boundary paradox
-
Galtier N. 2004. Recombination, GC-content and the human pseudoautosomal boundary paradox. Trends Genet. 20:347-434.
-
(2004)
Trends Genet.
, vol.20
, pp. 347-434
-
-
Galtier, N.1
-
32
-
-
0031829758
-
Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
-
Galtier N, Gouy M. 1998. Inferring pattern and process: maximumlikelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. Mol Biol Evol. 15:871-879. (Pubitemid 28321885)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.7
, pp. 871-879
-
-
Galtier, N.1
Gouy, M.2
-
33
-
-
0034766004
-
GC-content evolution in mammalian genomes: The biased gene conversion hypothesis
-
Galtier N, Piganeau G, Mouchiroud D, Duret L. 2001. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics 159:907-911. (Pubitemid 33035129)
-
(2001)
Genetics
, vol.159
, Issue.2
, pp. 907-911
-
-
Galtier, N.1
Piganeau, G.2
Mouchiroud, D.3
Duret, L.4
-
34
-
-
33845873317
-
Mitochondrial genomes and avian phylogeny: Complex characters and resolvability without explosive radiations
-
DOI 10.1093/molbev/msl158
-
Gibb GC, Kardailsky O, Kimball RT, Braun EL, Penny D. 2007. Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Mol Biol Evol. 24:269-280. (Pubitemid 46026300)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.1
, pp. 269-280
-
-
Gibb, G.C.1
Kardailsky, O.2
Kimball, R.T.3
Braun, E.L.4
Penny, D.5
-
35
-
-
78349237426
-
Surprising fitness consequences of GC-biased gene conversion: I. Mutation load and inbreeding depression
-
Glémin S. 2010. Surprising fitness consequences of GC-biased gene conversion: I. Mutation load and inbreeding depression. Genetics 185:939-959.
-
(2010)
Genetics
, vol.185
, pp. 939-959
-
-
Glémin, S.1
-
36
-
-
34248231212
-
The evolution of the avian genome as revealed by comparative molecular cytogenetics
-
DOI 10.1159/000103166
-
Griffin DK, Robertson LB, Tempest HG, Skinner BM. 2007. The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet Genome Res. 117:64-77. (Pubitemid 47202666)
-
(2007)
Cytogenetic and Genome Research
, vol.117
, Issue.1-4
, pp. 64-77
-
-
Griffin, D.K.1
Robertson, L.B.W.2
Tempest, H.G.3
Skinner, B.M.4
-
37
-
-
61849153558
-
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
-
12 co-authors
-
Groenen MA, Wahlberg P, Foglio M, et al. 12 co-authors. 2009. A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res. 19:510-519.
-
(2009)
Genome Res.
, vol.19
, pp. 510-519
-
-
Groenen, M.A.1
Wahlberg, P.2
Foglio, M.3
-
38
-
-
46449135061
-
A phylogenomic study of birds reveals their evolutionary history
-
DOI 10.1126/science.1157704
-
Hackett SJ, Kimball RT, Reddy S, et al. 17 co-authors. 2008. A phylogenomic study of birds reveals their evolutionary history. Science 320:1763-1768. (Pubitemid 351931288)
-
(2008)
Science
, vol.320
, Issue.5884
, pp. 1763-1768
-
-
Hackett, S.J.1
Kimball, R.T.2
Reddy, S.3
Bowie, R.C.K.4
Braun, E.L.5
Braun, M.J.6
Chojnowski, J.L.7
Cox, W.A.8
Han, K.-L.9
Harshman, J.10
Huddleston, C.J.11
Marks, B.D.12
Miglia, K.J.13
Moore, W.S.14
Sheldon, F.H.15
Steadman, D.W.16
Witt, C.C.17
Yuri, T.18
-
39
-
-
65449144325
-
Evaluation of next generation sequencing platforms for population targeted sequencing studies
-
11 co-authors
-
Harismendy O, Ng PC, Strausberg RL, et al. 11 co-authors. 2009. Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biol. 10:R32.
-
(2009)
Genome Biol.
, vol.10
-
-
Harismendy, O.1
Ng, P.C.2
Strausberg, R.L.3
-
40
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
International Chicken Genome Sequencing Consortium ICGSC
-
International Chicken Genome Sequencing Consortium (ICGSC). 2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
41
-
-
3242716663
-
Learned birdsong and the neurobiology of human language
-
DOI 10.1196/annals.1298.038
-
Jarvis ED. 2004. Learned birdsong and the neurobiology of human language. Ann N Y Acad Sci. 1016:749-777. (Pubitemid 38951495)
-
(2004)
Annals of the New York Academy of Sciences
, vol.1016
, pp. 749-777
-
-
Jarvis, E.D.1
-
42
-
-
0034014679
-
Molecular mapping of brain areas involved in parrot vocal communication
-
DOI 10.1002/(SICI)1096-9861(20000327)419:1<1::AID-CNE1>3.0.CO;2-M
-
Jarvis ED, Mello CV. 2000. Molecular mapping of brain areas involved in parrot vocal communication. J Comp Neurol. 419:1-31. (Pubitemid 30131451)
-
(2000)
Journal of Comparative Neurology
, vol.419
, Issue.1
, pp. 1-31
-
-
Jarvis, E.D.1
Mello, C.V.2
-
43
-
-
0034632857
-
Behaviourally driven gene expression reveals song nuclei in hummingbird brain
-
DOI 10.1038/35020570
-
Jarvis ED, Ribeiro S, Da Silva ML, Ventura D, Vielliard J, Mello CV. 2000. Behaviourally driven gene expression reveals song nuclei in hummingbird brain. Nature 406:628-632. (Pubitemid 30641049)
-
(2000)
Nature
, vol.406
, Issue.6796
, pp. 628-632
-
-
Jarvis, E.D.1
Ribeiro, S.2
Da Silva, M.L.3
Ventura, D.4
Vielliard, J.5
Mello, C.V.6
-
45
-
-
50249112600
-
Phylogenetic relationships within Passerida (Aves: Passeriformes): A review and a new molecular phylogeny based on three nuclear intron markers
-
Johansson US, Fjeldsa J, Bowie RCK. 2008. Phylogenetic relationships within Passerida (Aves: Passeriformes): a review and a new molecular phylogeny based on three nuclear intron markers. Mol Phylogenet Evol. 48:858-876.
-
(2008)
Mol Phylogenet Evol.
, vol.48
, pp. 858-876
-
-
Johansson, U.S.1
Fjeldsa, J.2
Bowie, R.C.K.3
-
46
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059-3066. (Pubitemid 34851225)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.14
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.-I.3
Miyata, T.4
-
47
-
-
77951918115
-
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species
-
13 co-authors
-
Künstner A, Wolf JBW, Backström N, et al. 13 co-authors. 2010. Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Mol Ecol. 19(Suppl 1):266-276.
-
(2010)
Mol Ecol.
, vol.19
, Issue.1 SUPPL.
, pp. 266-276
-
-
Künstner, A.1
Wold, J.B.W.2
Backström, N.3
-
48
-
-
34248159030
-
Suppression of longbranch attraction artefacts in the animal phylogeny using a siteheterogeneous model
-
Lartillot N, Brinkmann H, Philippe H. 2007. Suppression of longbranch attraction artefacts in the animal phylogeny using a siteheterogeneous model. BMC Evol Biol. 7(Suppl 1):S4.
-
(2007)
BMC Evol Biol.
, vol.7
, Issue.1 SUPPL.
-
-
Lartillot, N.1
Brinkmann, H.2
Philippe, H.3
-
49
-
-
2442691520
-
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
-
DOI 10.1093/molbev/msh112
-
Lartillot N, Philippe H. 2004. A Bayesian mixture model for acrosssite heterogeneities in the amino acid replacement process. Mol Biol Evol. 21:1095-1109. (Pubitemid 38658218)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.6
, pp. 1095-1109
-
-
Lartillot, N.1
Philippe, H.2
-
50
-
-
0036134757
-
Heterotachy, an important process of protein evolution
-
Lopez P, Casane D, Philippe H. 2002. Heterotachy, an important process of protein evolution. Mol Biol Evol. 19:1-7. (Pubitemid 34008041)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.1
, pp. 1-7
-
-
Lopez, P.1
Casane, D.2
Philippe, H.3
-
51
-
-
47949108144
-
High-resolution mapping of meiotic crossovers and non-crossovers in yeast
-
Mancera E, Bourgon R, Brozzi A, Huber W, Steinmetz LM. 2008. High-resolution mapping of meiotic crossovers and non-crossovers in yeast. Nature 454:479-485.
-
(2008)
Nature
, vol.454
, pp. 479-485
-
-
Mancera, E.1
Bourgon, R.2
Brozzi, A.3
Huber, W.4
Steinmetz, L.M.5
-
52
-
-
41349097522
-
Earliest fossil record of the Certhioidea (treecreepers and allies) from the early Miocene of Germany
-
Manegold A. 2008. Earliest fossil record of the Certhioidea (treecreepers and allies) from the early Miocene of Germany. J Ornithol. 149:223-228.
-
(2008)
J Ornithol
, vol.149
, pp. 223-228
-
-
Manegold, A.1
-
53
-
-
33748062306
-
A small suboscine-like passeriform bird from the early Oligocene of France
-
Mayr G, Manegold A. 2006. A small suboscine-like passeriform bird from the early oligocene of France. Condor 108:717-720. (Pubitemid 44300013)
-
(2006)
Condor
, vol.108
, Issue.3
, pp. 717-720
-
-
Mayr, G.1
Manegold, A.2
-
54
-
-
2442651458
-
Recombination drives the evolution of GC-content in the human genome
-
DOI 10.1093/molbev/msh070
-
Meunier J, Duret L. 2004. Recombination drives the evolution of GC-content in the human genome. Mol Biol Evol. 21:984-990. (Pubitemid 38658206)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.6
, pp. 984-990
-
-
Meunier, J.1
Duret, L.2
-
55
-
-
63049112416
-
The erratic mitochondrial clock: Variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals
-
Nabholz B, Glémin S, Galtier N. 2009. The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals. BMC Evol Biol. 9:54.
-
(2009)
BMC Evol Biol.
, vol.9
, pp. 54
-
-
Nabholz, B.1
Glémin, S.2
Galtier, N.3
-
56
-
-
0001719256
-
Origins of vocal learning
-
Nottebohm F. 1972. Origins of vocal learning. Am Nat. 106:116-140.
-
(1972)
Am Nat.
, vol.106
, pp. 116-140
-
-
Nottebohm, F.1
-
58
-
-
33747179098
-
A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock
-
DOI 10.1093/molbev/msl038
-
Pereira SL, Baker AJ. 2006. A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock. Mol Biol Evol. 23:1731-1740. (Pubitemid 44309767)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.9
, pp. 1731-1740
-
-
Pereira, S.L.1
Baker, A.J.2
-
59
-
-
65249099546
-
Phylogenomics revives traditional views on deep animal relationships
-
20 co-authors
-
Philippe H, Derelle R, Lopez P, et al. (20 co-authors). 2009. Phylogenomics revives traditional views on deep animal relationships. Curr Biol. 19:706-712.
-
(2009)
Curr Biol.
, vol.19
, pp. 706-712
-
-
Philippe, H.1
Derelle, R.2
Lopez, P.3
-
60
-
-
3042550872
-
Genome-scale phylogeny and the detection of systematic biases
-
DOI 10.1093/molbev/msh137
-
Phillips MJ, Delsuc F, Penny D. 2004. Genome-scale phylogeny and the detection of systematic biases. Mol Biol Evol. 21:1455-1458. (Pubitemid 38823748)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.7
, pp. 1455-1458
-
-
Phillips, M.J.1
Delsuc, F.2
Penny, D.3
-
61
-
-
45849154165
-
JModelTest: Phylogenetic model averaging
-
DOI 10.1093/molbev/msn083
-
Posada D. 2008. jModelTest: phylogenetic model averaging. Mol Biol Evol. 25:1253-1256. (Pubitemid 351882013)
-
(2008)
Molecular Biology and Evolution
, vol.25
, Issue.7
, pp. 1253-1256
-
-
Posada, D.1
-
62
-
-
58449087343
-
Toward resolving deep neoaves phylogeny: Data, signal enhancement, and priors
-
Pratt RC, Gibb GC, Morgan-Richards M, Phillips MJ, Hendy MD, Penny D. 2009. Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors. Mol Biol Evol. 26:313-326.
-
(2009)
Mol Biol Evol.
, vol.26
, pp. 313-326
-
-
Pratt, R.C.1
Gibb, G.C.2
Morgan-Richards, M.3
Phillips, M.J.4
Hendy, M.D.5
Penny, D.6
-
63
-
-
34548556039
-
Inferring speciation times under an episodic molecular clock
-
Rannala B, Yang Z. 2007. Inferring speciation times under an episodic molecular clock. Syst Biol. 56:453-466.
-
(2007)
Syst Biol.
, vol.56
, pp. 453-466
-
-
Rannala, B.1
Yang, Z.2
-
65
-
-
77955136814
-
Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
-
Romiguier J, Ranwez V, Douzery EJ, Galtier N. 2010. Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res. 20:1001-1009.
-
(2010)
Genome Res.
, vol.20
, pp. 1001-1009
-
-
Romiguier, J.1
Ranwez, V.2
Douzery, E.J.3
Galtier, N.4
-
66
-
-
70349434888
-
Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics
-
Sheffield NC, Song H, Cameron SL, Whiting MF. 2009. Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. Syst Biol. 58:381-394.
-
(2009)
Syst Biol.
, vol.58
, pp. 381-394
-
-
Sheffield, N.C.1
Song, H.2
Cameron, S.L.3
Whiting, M.F.4
-
67
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J, Ji H. 2008. Next-generation DNA sequencing. Nat Biotechnol. 26:1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
69
-
-
33646886799
-
Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution
-
DOI 10.1093/molbev/msj124
-
Slack KE, Jones CM, Ando T, Harrison GLA, Fordyce RE, Arnason U, Penny D. 2006. Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution. Mol Biol Evol. 23:1144-1155. (Pubitemid 43781590)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.6
, pp. 1144-1155
-
-
Slack, K.E.1
Jones, C.M.2
Ando, T.3
Harrison, G.L.4
Fordyce, R.E.5
Arnason, U.6
Penny, D.7
-
70
-
-
33749416027
-
The influence of recombination on human genetic diversity
-
Spencer CC, Deloukas P, Hunt S, Mullikin J, Myers S, Silverman B, Donnelly P, Bentley D, Mcvean G. 2006. The influence of recombination on human genetic diversity. PLoS Genet. 2:e148.
-
(2006)
PLoS Genet.
, vol.2
-
-
Spencer, C.C.1
Deloukas, P.2
Hunt, S.3
Mullikin, J.4
Myers, S.5
Silverman, B.6
Donnelly, P.7
Bentley, D.8
Mcvean, G.9
-
71
-
-
0035142366
-
Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction
-
Springer M, Debry R, Douady C, Amrine H, Madsen O, de Jong W, Stanhope M. 2001. Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. Mol Biol Evol. 18:132-143. (Pubitemid 32118858)
-
(2001)
Molecular Biology and Evolution
, vol.18
, Issue.2
, pp. 132-143
-
-
Springer, M.S.1
DeBry, R.W.2
Douady, C.3
Amrine, H.M.4
Madsen, O.5
De Jong, W.W.6
Stanhope, M.J.7
-
72
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
DOI 10.1093/bioinformatics/btl446
-
Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690. (Pubitemid 44642609)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
73
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne J, Kishino H, Painter I. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol Biol Evol. 15:1647-1657. (Pubitemid 28550989)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.12
, pp. 1647-1657
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
74
-
-
77950376512
-
The genome of the zebra finch: Special insights into vocal learning and communication
-
74 co-authors
-
Warren WC, Clayton DF, Ellegren H, et al. (74 co-authors). 2010. The genome of the zebra finch: special insights into vocal learning and communication. Nature 464:757-762.
-
(2010)
Nature
, vol.464
, pp. 757-762
-
-
Warren, W.C.1
Clayton, D.F.2
Ellegren, H.3
-
75
-
-
33646884615
-
Strong regional biases in nucleotide substitution in the chicken genome
-
DOI 10.1093/molbev/msk008
-
Webster MT, Axelsson E, Ellegren H. 2006. Strong regional biases in nucleotide substitution in the chicken genome. Mol Biol Evol. 23:1203-1216. (Pubitemid 43781595)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.6
, pp. 1203-1216
-
-
Webster, M.T.1
Axelsson, E.2
Ellegren, H.3
-
76
-
-
19544384915
-
Male-driven biased gene conversion governs the evolution of base composition in human Alu repeats
-
DOI 10.1093/molbev/msi136
-
Webster MT, Smith NG, Hultin-Rosenberg L, Arndt PF, Ellegren H. 2005. Male-driven biased gene conversion governs the evolution of base composition in human Alu repeats. Mol Biol Evol. 22:1468-1474. (Pubitemid 40734197)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.6
, pp. 1468-1474
-
-
Webster, M.T.1
Smith, N.G.C.2
Hultin-Rosenberg, L.3
Arndt, P.F.4
Ellegren, H.5
-
78
-
-
0030451420
-
Among-site rate variation and its impact on phylogenetic analyses
-
DOI 10.1016/0169-5347(96)10041-0, PII S0169534796100410
-
Yang Z. 1996. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol. 11:367-372. (Pubitemid 126381530)
-
(1996)
Trends in Ecology and Evolution
, vol.11
, Issue.9
, pp. 367-372
-
-
Yang, Z.1
-
79
-
-
79961074696
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. 2007a. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 23:7-9.
-
(2007)
Mol Biol Evol.
, vol.23
, pp. 7-9
-
-
Yang, Z.1
-
81
-
-
28944451210
-
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
-
DOI 10.1093/molbev/msj024
-
Yang Z, Rannala B. 2006. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol Biol Evol. 23:212-226. (Pubitemid 41785968)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.1
, pp. 212-226
-
-
Yang, Z.1
Rannala, B.2
-
82
-
-
0033933640
-
Estimation of primate speciation dates using local molecular clocks
-
Yoder AD, Yang Z. 2000. Estimation of primate speciation dates using local molecular clocks. Mol Biol Evol. 17:1081-1090. (Pubitemid 30419221)
-
(2000)
Molecular Biology and Evolution
, vol.17
, Issue.7
, pp. 1081-1090
-
-
Yoder, A.D.1
Yang, Z.2
|