-
1
-
-
0033531344
-
Taxon-specific content of oligonucleotide triplets in 16S rRNAs of anoxygenic phototropic and nitrifying bacteria
-
Abella, C. A., V. N. Ivanov, and I. S. Kim. 1999. Taxon-specific content of oligonucleotide triplets in 16S rRNAs of anoxygenic phototropic and nitrifying bacteria. J. Theor. Biol. 196:289-296.
-
(1999)
J. Theor. Biol.
, vol.196
, pp. 289-296
-
-
Abella, C.A.1
Ivanov, V.N.2
Kim, I.S.3
-
2
-
-
0034681511
-
Evidence for a high frequency of simultaneous double-nucleotide substitutions
-
Averof, M., A. Rokas, K. H. Wolfe, and P. M. Sharp. 2000. Evidence for a high frequency of simultaneous double-nucleotide substitutions. Science 287:1283-1286.
-
(2000)
Science
, vol.287
, pp. 1283-1286
-
-
Averof, M.1
Rokas, A.2
Wolfe, K.H.3
Sharp, P.M.4
-
3
-
-
0031029793
-
The major compositional transitions in the vertebrate genome
-
Bernardi, G., S. Hughes, and D. Mouchiroud. 1997. The major compositional transitions in the vertebrate genome. J. Mol. Evol. 44:S44-S51.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. S44-S51
-
-
Bernardi, G.1
Hughes, S.2
Mouchiroud, D.3
-
4
-
-
0011051225
-
Evolution of the genome and the genetic code: Selection at the dinucleotide level by methylation and polyribonucleotide cleavage
-
Beutler, E., T. Gelbart, J. Han, J. A. Koziol, and B. Beutler. 1989. Evolution of the genome and the genetic code: Selection at the dinucleotide level by methylation and polyribonucleotide cleavage. Proc. Natl. Acad. Sci. USA 86:1992-1996.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1992-1996
-
-
Beutler, E.1
Gelbart, T.2
Han, J.3
Koziol, J.A.4
Beutler, B.5
-
5
-
-
0026739088
-
Evolutionary consequences of nonrandom damage and repair of chromatin domains
-
Boulikas, T. 1992. Evolutionary consequences of nonrandom damage and repair of chromatin domains. J. Mol. Evol. 35:156-180.
-
(1992)
J. Mol. Evol.
, vol.35
, pp. 156-180
-
-
Boulikas, T.1
-
6
-
-
0030593377
-
The 1.6 angstroms resolution crystal structure of nuclear transport factor 2 (NTF2)
-
Bullock, T. L., W. D. Clarkson, H. M. Kent, and M. Stewart. 1996. The 1.6 angstroms resolution crystal structure of nuclear transport factor 2 (NTF2). J. Mol. Biol. 260:422-431.
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 422-431
-
-
Bullock, T.L.1
Clarkson, W.D.2
Kent, H.M.3
Stewart, M.4
-
7
-
-
0026502711
-
Over- and under-representation of short oligonucleotide in DNA sequences
-
Burge, C., A. M. Campbell, and S. Karlin. 1992. Over- and under-representation of short oligonucleotide in DNA sequences. Proc. Natl. Acad. Sci. USA 89:1358-1362.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 1358-1362
-
-
Burge, C.1
Campbell, A.M.2
Karlin, S.3
-
8
-
-
0027934526
-
Single-copy sequence homology among the GC-richest isochores of the genomes from warm-blooded vertebrates
-
CaccioÌ, S., P. Perani, S. Saccone, F. Kadi, and G. Bernardi. 1994. Single-copy sequence homology among the GC-richest isochores of the genomes from warm-blooded vertebrates. J. Mol. Evol. 39:331-339.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 331-339
-
-
CaccioÌ, S.1
Perani, P.2
Saccone, S.3
Kadi, F.4
Bernardi, G.5
-
9
-
-
0026213471
-
Cyclobutane dimers and (6-4) photoproducts in human cells are mended with the same patch sizes
-
Cleaver, J. E., J. Jen, W. C. Charles, and D. L. Mitchell. 1991. Cyclobutane dimers and (6-4) photoproducts in human cells are mended with the same patch sizes. Photochem. Photobiol. 54:393-402.
-
(1991)
Photochem. Photobiol.
, vol.54
, pp. 393-402
-
-
Cleaver, J.E.1
Jen, J.2
Charles, W.C.3
Mitchell, D.L.4
-
10
-
-
0030621127
-
Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
-
Cooper, A., and D. Penny. 1997. Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence. Science 275:1109-1113.
-
(1997)
Science
, vol.275
, pp. 1109-1113
-
-
Cooper, A.1
Penny, D.2
-
11
-
-
84983847415
-
Phylogeny and evolution of the ratite birds
-
Cracraft, J. 1974. Phylogeny and evolution of the ratite birds. Ibis 116:494-521.
-
(1974)
Ibis
, vol.116
, pp. 494-521
-
-
Cracraft, J.1
-
12
-
-
0000903752
-
The major clades of birds
-
M. J. Benton, ed. Clarendon Press, Oxford, U.K.
-
Cracraft, J. 1988. The major clades of birds. Pages 339-361 in The phylogeny and classification of the tetrapods, Volume 1. Amphibians, reptiles, birds, Volume 35A (M. J. Benton, ed.). Clarendon Press, Oxford, U.K.
-
(1988)
The Phylogeny and Classification of the Tetrapods,Amphibians, Reptiles, Birds
, vol.35 A
, Issue.1
, pp. 339-361
-
-
Cracraft, J.1
-
13
-
-
0030248606
-
Plasma thyroxine concentrations in farmed ostriches in relation to age, body weight and growth hormone
-
Dawson, A., D. C. Deeming, A. C. K. Dick, and P. J. Sharp. 1996. Plasma thyroxine concentrations in farmed ostriches in relation to age, body weight and growth hormone. Gen. Comp. Endocrinol. 103:308-315.
-
(1996)
Gen. Comp. Endocrinol.
, vol.103
, pp. 308-315
-
-
Dawson, A.1
Deeming, D.C.2
Dick, A.C.K.3
Sharp, P.J.4
-
15
-
-
84952321451
-
Genomic signature is preserved in short DNA fragments
-
Deschavanne, P., A. Giron, J. Vilain, C. Dufraigne, and B. Fertil. 2000. Genomic signature is preserved in short DNA fragments. IEEE Int. Symp. Bioinf. Biomed. Eng. 2000:161-167.
-
(2000)
IEEE Int. Symp. Bioinf. Biomed. Eng.
, vol.2000
, pp. 161-167
-
-
Deschavanne, P.1
Giron, A.2
Vilain, J.3
Dufraigne, C.4
Fertil, B.5
-
16
-
-
0032823783
-
Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences
-
Deschavanne, P. J., A. Giron, J. Vilain, G. Fagot, and B. Fertil. 1999. Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences. Mol. Biol. Evol. 16:1391-1399.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1391-1399
-
-
Deschavanne, P.J.1
Giron, A.2
Vilain, J.3
Fagot, G.4
Fertil, B.5
-
17
-
-
0033851037
-
A 39-kb sequence around a blackbird MHC class II B gene: Ghost of selection past and songbird genome architecture
-
Edwards, S. V., J. Gasper, D. Garrigan, D. A. Martindale, and B. F. Koop. 2000. A 39-kb sequence around a blackbird MHC class II B gene: Ghost of selection past and songbird genome architecture. Mol. Biol. Evol. 17:1384-1395.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1384-1395
-
-
Edwards, S.V.1
Gasper, J.2
Garrigan, D.3
Martindale, D.A.4
Koop, B.F.5
-
18
-
-
84983695724
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
20
-
-
37049246982
-
Construction of phylogenetic trees
-
Fitch, W. M., and E. Margoliash. 1967. Construction of phylogenetic trees. Science 155:279-284.
-
(1967)
Science
, vol.155
, pp. 279-284
-
-
Fitch, W.M.1
Margoliash, E.2
-
21
-
-
0033858879
-
Cytosine deamination plays a primary role in the evolution of mammalian isochores
-
Fryxell, K. J., and E. Zuckerkandl. 2000. Cytosine deamination plays a primary role in the evolution of mammalian isochores. Mol. Biol. Evol. 17:1371-1383.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1371-1383
-
-
Fryxell, K.J.1
Zuckerkandl, E.2
-
22
-
-
0034001912
-
Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods
-
Garland, T., Jr., and A. R. Ives. 2000. Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods. Am. Nat. 155:346-364.
-
(2000)
Am. Nat.
, vol.155
, pp. 346-364
-
-
Garland T., Jr.1
Ives, A.R.2
-
23
-
-
0033159606
-
Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene
-
Groth, J. G., and G. F. Barrowclough. 1999. Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Mol. Phylogenet. Evol. 12:115-123.
-
(1999)
Mol. Phylogenet. Evol.
, vol.12
, pp. 115-123
-
-
Groth, J.G.1
Barrowclough, G.F.2
-
24
-
-
0035820835
-
Complete mitochondrial DNA genome sequences of extinct birds: Ratite phylogenetics and the vicariance biogeography hypothesis
-
Haddrath, O., and A. J. Baker. 2001. Complete mitochondrial DNA genome sequences of extinct birds: Ratite phylogenetics and the vicariance biogeography hypothesis. Proc. R. Soc. Lond. B 268:939-945.
-
(2001)
Proc. R. Soc. Lond. B
, vol.268
, pp. 939-945
-
-
Haddrath, O.1
Baker, A.J.2
-
25
-
-
0033531328
-
Analyses of mitochondrial DNA nest ratite birds within the Neognathae: Supporting a neotenous origin of ratite morphological characters
-
HaÌrlid, A., and U. Arnason. 1999. Analyses of mitochondrial DNA nest ratite birds within the Neognathae: Supporting a neotenous origin of ratite morphological characters. Proc. R. Soc. Lond. B 266:305-309.
-
(1999)
Proc. R. Soc. Lond. B
, vol.266
, pp. 305-309
-
-
HaÌrlid, A.1
Arnason, U.2
-
26
-
-
0025086910
-
Phylogeny and molecular evolution in primates
-
Hasegawa, M. 1990. Phylogeny and molecular evolution in primates. Jpn. J. Genet. 65:243-266.
-
(1990)
Jpn. J. Genet.
, vol.65
, pp. 243-266
-
-
Hasegawa, M.1
-
27
-
-
0034131120
-
Ribosomal DNA evidence and disjunctions of western American Portulacaceae
-
Hershkovitz, M. A., and E. A. Zimmer. 2000. Ribosomal DNA evidence and disjunctions of western American Portulacaceae. Mol. Phylogenet. Evol. 15:419-439.
-
(2000)
Mol. Phylogenet. Evol.
, vol.15
, pp. 419-439
-
-
Hershkovitz, M.A.1
Zimmer, E.A.2
-
28
-
-
0034126368
-
MHC class II pseudogene and genomic signature of a 32-kb cosmid in the House Finch (Carpodacus mexicanus)
-
Hess, C. M., J. Gasper, H. Hoekstra, C. Hill, and S. V. Edwards. 2000. MHC class II pseudogene and genomic signature of a 32-kb cosmid in the House Finch (Carpodacus mexicanus). Genome Res. 10:613-623.
-
(2000)
Genome Res.
, vol.10
, pp. 613-623
-
-
Hess, C.M.1
Gasper, J.2
Hoekstra, H.3
Hill, C.4
Edwards, S.V.5
-
29
-
-
0027970591
-
Chromatin self-organization by mutation bias
-
Holmquist, G. P. 1994. Chromatin self-organization by mutation bias. J. Mol. Evol. 39:436-438.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 436-438
-
-
Holmquist, G.P.1
-
30
-
-
0022904987
-
Ostrich ancestors found in the Northern Hemisphere suggest new hypotheses of ratite origins
-
Houde, P. W. 1986. Ostrich ancestors found in the Northern Hemisphere suggest new hypotheses of ratite origins. Nature 324:563-565.
-
(1986)
Nature
, vol.324
, pp. 563-565
-
-
Houde, P.W.1
-
32
-
-
0032736988
-
Warm-blooded isochore structure in the Nile Crocodile and turtle
-
Hughes, S., D. Zelus, and D. Mouchiroud. 1999. Warm-blooded isochore structure in the Nile Crocodile and turtle. Mol. Biol. Evol. 16:1521-1527.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1521-1527
-
-
Hughes, S.1
Zelus, D.2
Mouchiroud, D.3
-
33
-
-
0025340372
-
Chaos game representation of gene structure
-
Jeffrey, H. J. 1990. Chaos game representation of gene structure. Nucleic Acids Res. 18:2163-2170.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 2163-2170
-
-
Jeffrey, H.J.1
-
34
-
-
0035527384
-
Taxon sampling and the phylogenetic position of Passeriformes: Evidence from 916 avian cytochrome b sequences
-
Johnson, K. P. 2001. Taxon sampling and the phylogenetic position of Passeriformes: Evidence from 916 avian cytochrome b sequences. Syst. Biol. 50:128-136.
-
(2001)
Syst. Biol.
, vol.50
, pp. 128-136
-
-
Johnson, K.P.1
-
35
-
-
0027369473
-
The compositional patterns of the avian genomes and their evolutionary implications
-
Kadi, F., D. Mouchiroud, G. Sabeur, and G. Bernardi. 1993. The compositional patterns of the avian genomes and their evolutionary implications. J. Mol. Evol. 37:544-551.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 544-551
-
-
Kadi, F.1
Mouchiroud, D.2
Sabeur, G.3
Bernardi, G.4
-
36
-
-
0029060923
-
Dinucleotide relative abundance extremes: A genomic signature
-
Karlin, S., and C. Burge. 1995. Dinucleotide relative abundance extremes: A genomic signature. Trends Genet. 11:283-290.
-
(1995)
Trends Genet.
, vol.11
, pp. 283-290
-
-
Karlin, S.1
Burge, C.2
-
37
-
-
0028606501
-
Comparisons of eukaryotic genomic sequences
-
Karlin, S., and I. Ladunga. 1994. Comparisons of eukaryotic genomic sequences. Proc. Natl. Acad. Sci. USA 91:12832-12836.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 12832-12836
-
-
Karlin, S.1
Ladunga, I.2
-
38
-
-
1842332701
-
Compositional biases of bacterial genomes and evolutionary implications
-
Karlin, S., J. MraÌzek, and A. M. Campbell. 1997. Compositional biases of bacterial genomes and evolutionary implications. J. Bacteriol. 179:3899-3901.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3899-3901
-
-
Karlin, S.1
MraÌzek, J.2
Campbell, A.M.3
-
39
-
-
0000341183
-
Sequences and codes, fundamentals of biomolecular cryptology
-
D. Smith, ed. Academic Press, San Diego
-
Konopka, A. K. 1994. Sequences and codes, fundamentals of biomolecular cryptology. Pages 119-173 in Biocomputing: Informatics and genome projects (D. Smith, ed.). Academic Press, San Diego.
-
(1994)
Biocomputing: Informatics and Genome Projects
, pp. 119-173
-
-
Konopka, A.K.1
-
40
-
-
0030902304
-
Amino acid substitutions preserve protein folding by conserving steric and hydrophobicity properties
-
Ladunga, I., and R. F. Smith. 1997. Amino acid substitutions preserve protein folding by conserving steric and hydrophobicity properties. Protein Eng. 10:187-196.
-
(1997)
Protein Eng.
, vol.10
, pp. 187-196
-
-
Ladunga, I.1
Smith, R.F.2
-
41
-
-
0022596134
-
Phylogenetic trees constructed from hydrophobicity values of protein sequences
-
Leunissen, J. A., and W. W. De Jong. 1986. Phylogenetic trees constructed from hydrophobicity values of protein sequences. J. Theor. Biol. 119:189-196.
-
(1986)
J. Theor. Biol.
, vol.119
, pp. 189-196
-
-
Leunissen, J.A.1
De Jong, W.W.2
-
42
-
-
0028807395
-
Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA
-
Martin, A. P. 1995. Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA. Mol. Biol. Evol. 12:1124-1131.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 1124-1131
-
-
Martin, A.P.1
-
43
-
-
0030479461
-
A distant evolutionary relationship between bacterial sphingomyelinase and mammalian DNase I
-
Matsuo, Y., A. Yamada, K. Tsukamoto, H. O. Tamura, H. Ikezawa, H. Nakamura, and K. Nishikawa. 1996. A distant evolutionary relationship between bacterial sphingomyelinase and mammalian DNase I. Protein Sci. 5:2459-2467.
-
(1996)
Protein Sci.
, vol.5
, pp. 2459-2467
-
-
Matsuo, Y.1
Yamada, A.2
Tsukamoto, K.3
Tamura, H.O.4
Ikezawa, H.5
Nakamura, H.6
Nishikawa, K.7
-
44
-
-
0031876009
-
Chicken microchromosomes are hyperacetylated, early replicating, and gene rich
-
Mcqueen, H. A., G. Siriaco, and A. P. Bird. 1998. Chicken microchromosomes are hyperacetylated, early replicating, and gene rich. Genome Res. 8:621-630.
-
(1998)
Genome Res.
, vol.8
, pp. 621-630
-
-
Mcqueen, H.A.1
Siriaco, G.2
Bird, A.P.3
-
46
-
-
0033084950
-
Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes
-
Mindell, D. P., M. D. Sorenson, D. E. Dimcheff, M. Hasegawa, J. C. Ast, and T. Yuri. 1999. Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes. Syst. Biol. 48:138-152.
-
(1999)
Syst. Biol.
, vol.48
, pp. 138-152
-
-
Mindell, D.P.1
Sorenson, M.D.2
Dimcheff, D.E.3
Hasegawa, M.4
Ast, J.C.5
Yuri, T.6
-
47
-
-
0028834672
-
Neighboring base composition is strongly correlated with base substitution bias in a region of the chloroplast genome
-
Morton, B. R., and M. T. Clegg. 1995. Neighboring base composition is strongly correlated with base substitution bias in a region of the chloroplast genome. J. Mol. Evol. 41:597-603.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 597-603
-
-
Morton, B.R.1
Clegg, M.T.2
-
49
-
-
0021759169
-
Doublet frequencies in evolutionary distinct groups
-
Nussinov, R. 1984. Doublet frequencies in evolutionary distinct groups. Nucleic Acids Res. 12:1749-1763.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 1749-1763
-
-
Nussinov, R.1
-
50
-
-
0032516061
-
The location of Z- and W-linked marker genes and sequence on the homomorphic sex chromosomes of the ostrich and the emu
-
Ogawa, A., K. Murata, and S. Mizuno. 1998. The location of Z- and W-linked marker genes and sequence on the homomorphic sex chromosomes of the ostrich and the emu. Proc. Natl. Acad. Sci. USA 95:4415-4418.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 4415-4418
-
-
Ogawa, A.1
Murata, K.2
Mizuno, S.3
-
51
-
-
0001506399
-
Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds
-
Paton, T., O. Haddrath, and A. J. Baker. 2002. Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds. Proc. R. Soc. Lond. B 269:839-846.
-
(2002)
Proc. R. Soc. Lond. B
, vol.269
, pp. 839-846
-
-
Paton, T.1
Haddrath, O.2
Baker, A.J.3
-
52
-
-
0026566518
-
Binding of transcription factors creates hot spots for UV photoproducts in vivo
-
Pfeifer, G. P., R. Drouin, A. D. Riggs, and G. P. Holmquist. 1992. Binding of transcription factors creates hot spots for UV photoproducts in vivo. Mol. Cell Biol. 12:1798-1804.
-
(1992)
Mol. Cell Biol.
, vol.12
, pp. 1798-1804
-
-
Pfeifer, G.P.1
Drouin, R.2
Riggs, A.D.3
Holmquist, G.P.4
-
53
-
-
0025359462
-
Linguistic measure of taxonomic and functional relatedness of nucleotide sequences
-
Pietrokovski, S., S. Hirshon, and E. N. Trifonov. 1990. Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. J. Biol. Struct. Dynam. 7:1251-1268.
-
(1990)
J. Biol. Struct. Dynam.
, vol.7
, pp. 1251-1268
-
-
Pietrokovski, S.1
Hirshon, S.2
Trifonov, E.N.3
-
54
-
-
0017316934
-
Evolution of flightless land birds on southern continents: Transferrin comparison shows monophyletic origin of ratites
-
Prager, E. M., A. C. Wilson, D. T. Osuga, and R. E. Feeney. 1976. Evolution of flightless land birds on southern continents: Transferrin comparison shows monophyletic origin of ratites. J. Mol. Evol. 8:283-294.
-
(1976)
J. Mol. Evol.
, vol.8
, pp. 283-294
-
-
Prager, E.M.1
Wilson, A.C.2
Osuga, D.T.3
Feeney, R.E.4
-
55
-
-
0030972828
-
Low frequency of microsatellites in the avian genome
-
Primmer, C. R., T. Raudsepp, B. P. Chowdhary, A. P. Mller, and H. Ellegren. 1997. Low frequency of microsatellites in the avian genome. Genome Res. 7:471-482.
-
(1997)
Genome Res.
, vol.7
, pp. 471-482
-
-
Primmer, C.R.1
Raudsepp, T.2
Chowdhary, B.P.3
Mller, A.P.4
Ellegren, H.5
-
56
-
-
0002356205
-
Using interspecies phylogenies to test macroevolutionary hypotheses
-
P. H. Harvey, A. J. L. Brown, J. M. Smith, and S. Nee, eds. Oxford Univ. Press, Oxford, U.K.
-
Purvis, A. 1996. Using interspecies phylogenies to test macroevolutionary hypotheses. Pages 153-168 in New uses for new phylogenies (P. H. Harvey, A. J. L. Brown, J. M. Smith, and S. Nee, eds.). Oxford Univ. Press, Oxford, U.K.
-
(1996)
New Uses for New Phylogenies
, pp. 153-168
-
-
Purvis, A.1
-
57
-
-
0026660413
-
A simple method for estimating and testing minimum-evolution trees
-
Rzhetsky, A., and M. Nei. 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9:945-967.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 945-967
-
-
Rzhetsky, A.1
Nei, M.2
-
58
-
-
0028813932
-
Tests of applicability of several substitution models for DNA sequence data
-
Rzhetsky, A., and M. Nei. 1995. Tests of applicability of several substitution models for DNA sequence data. Mol. Biol. Evol. 12:131-151.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 131-151
-
-
Rzhetsky, A.1
Nei, M.2
-
59
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
60
-
-
0034887748
-
Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier
-
Sandberg, R., G. Winberg, C.-I. BraÌnden, A. Kaske, I. Ernberg, and J. CoÌster. 2001. Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier. Genome Res. 11:1404-1409.
-
(2001)
Genome Res.
, vol.11
, pp. 1404-1409
-
-
Sandberg, R.1
Winberg, G.2
BraÌnden, C.-I.3
Kaske, A.4
Ernberg, I.5
CoÌster, J.6
-
61
-
-
0030773749
-
A nonparametric approach to estimating divergence times in the absence of rate constancy
-
Sanderson, M. J. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14:1218-1231.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1218-1231
-
-
Sanderson, M.J.1
-
62
-
-
0031583033
-
Information content of individual genetic sequences
-
Schneider, T. D. 1997. Information content of individual genetic sequences. J. Theor. Biol. 189:427-441.
-
(1997)
J. Theor. Biol.
, vol.189
, pp. 427-441
-
-
Schneider, T.D.1
-
63
-
-
0033278902
-
Toward assigning helical regions in alignments of ribosomal RNA and testing the appropriateness of evolutionary models
-
SchoÌniger, M., and A. Von Haeseler. 1999. Toward assigning helical regions in alignments of ribosomal RNA and testing the appropriateness of evolutionary models. J. Mol. Evol. 49:691-698.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 691-698
-
-
SchoÌniger, M.1
Von Haeseler, A.2
-
64
-
-
0000787344
-
A comparative study of the egg white proteins of non-passerine birds
-
Sibley, C. G., and J. E. Ahlquist. 1972. A comparative study of the egg white proteins of non-passerine birds. Peabody Mus. Nat. Hist. Bull. 39:1-276.
-
(1972)
Peabody Mus. Nat. Hist. Bull.
, vol.39
, pp. 1-276
-
-
Sibley, C.G.1
Ahlquist, J.E.2
-
65
-
-
0000978444
-
A classification of the living birds of the world based on DNA-DNA hybridization studies
-
Sibley, C. G., and J. E. Ahlquist. 1988. A classification of the living birds of the world based on DNA-DNA hybridization studies. Auk 105:409-423.
-
(1988)
Auk
, vol.105
, pp. 409-423
-
-
Sibley, C.G.1
Ahlquist, J.E.2
-
67
-
-
0021180099
-
Ratites as oldest offshoot of avian stem-Evidence from � crystallin sequences
-
Stapel, S. O., J. A. M. Leunissen, M. Versteeg, J. Wattel, and W. W. De Jong. 1984. Ratites as oldest offshoot of avian stem-Evidence from � crystallin sequences. Nature 311:257-259.
-
(1984)
Nature
, vol.311
, pp. 257-259
-
-
Stapel, S.O.1
Leunissen, J.A.M.2
Versteeg, M.3
Wattel, J.4
De Jong, W.W.5
-
68
-
-
0027180533
-
Confidence in evolutionary trees from biological sequence data
-
Steel, M. A., P. J. Lockhart, and D. Penny. 1993. Confidence in evolutionary trees from biological sequence data. Nature 364:440-442.
-
(1993)
Nature
, vol.364
, pp. 440-442
-
-
Steel, M.A.1
Lockhart, P.J.2
Penny, D.3
-
69
-
-
0032875445
-
The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models
-
Sullivan, J., D. L. Swofford, and G. J. P. Naylor. 1999. The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models. Mol. Biol. Evol. 16:1347-1356.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1347-1356
-
-
Sullivan, J.1
Swofford, D.L.2
Naylor, G.J.P.3
-
70
-
-
0031028657
-
Comparison of protein structures using 3D profile alignment
-
Suyama, M., Y. Matsuo, and K. Nishikawa. 1997. Comparison of protein structures using 3D profile alignment. J. Mol. Evol. 44:S163-S173.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. S163-S173
-
-
Suyama, M.1
Matsuo, Y.2
Nishikawa, K.3
-
72
-
-
0034000984
-
The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes
-
Van Tuinen, M., C. G. Sibley, and S. B. Hedges. 2000. The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes. Mol. Biol. Evol. 17:451-457.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 451-457
-
-
Tuinen, V.A.N.M.1
Sibley, C.G.2
Hedges, S.B.3
-
73
-
-
0036841106
-
The evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs
-
in press
-
Waltari, E., and S. V. Edwards. 2002. The evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs. Am. Nat. (in press).
-
(2002)
Am. Nat.
-
-
Waltari, E.1
Edwards, S.V.2
-
74
-
-
0027422858
-
Mammalian gene evolution: Nucleotide sequence divergence between mouse and rat
-
Wolfe, K. H., and P. M. Sharp. 1993. Mammalian gene evolution: Nucleotide sequence divergence between mouse and rat. J. Mol. Evol. 37:441-456.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 441-456
-
-
Wolfe, K.H.1
Sharp, P.M.2
-
75
-
-
0033004740
-
Estimation of the transition/transversion rate bias and species sampling
-
Yang, Z. H., and A. D. Yoder. 1999. Estimation of the transition/transversion rate bias and species sampling. J. Mol. Evol. 48:274-283.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 274-283
-
-
Yang, Z.H.1
Yoder, A.D.2
-
76
-
-
0032573432
-
Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells
-
Ye, N., G. P. Holmquist, and T. R. O'connor. 1998. Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells. J. Mol. Biol. 284:269-285.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 269-285
-
-
Ye, N.1
Holmquist, G.P.2
O'Connor, T.R.3
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