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Volumn 51, Issue 4, 2002, Pages 599-613

A genomic schism in birds revealed by phylogenetic analysis of DNA strings

Author keywords

Bioinformatics; CpG island; Genomics; Isochore; Ratite

Indexed keywords

DNA;

EID: 0036700153     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150290102285     Document Type: Article
Times cited : (58)

References (76)
  • 1
    • 0033531344 scopus 로고    scopus 로고
    • Taxon-specific content of oligonucleotide triplets in 16S rRNAs of anoxygenic phototropic and nitrifying bacteria
    • Abella, C. A., V. N. Ivanov, and I. S. Kim. 1999. Taxon-specific content of oligonucleotide triplets in 16S rRNAs of anoxygenic phototropic and nitrifying bacteria. J. Theor. Biol. 196:289-296.
    • (1999) J. Theor. Biol. , vol.196 , pp. 289-296
    • Abella, C.A.1    Ivanov, V.N.2    Kim, I.S.3
  • 2
    • 0034681511 scopus 로고    scopus 로고
    • Evidence for a high frequency of simultaneous double-nucleotide substitutions
    • Averof, M., A. Rokas, K. H. Wolfe, and P. M. Sharp. 2000. Evidence for a high frequency of simultaneous double-nucleotide substitutions. Science 287:1283-1286.
    • (2000) Science , vol.287 , pp. 1283-1286
    • Averof, M.1    Rokas, A.2    Wolfe, K.H.3    Sharp, P.M.4
  • 3
    • 0031029793 scopus 로고    scopus 로고
    • The major compositional transitions in the vertebrate genome
    • Bernardi, G., S. Hughes, and D. Mouchiroud. 1997. The major compositional transitions in the vertebrate genome. J. Mol. Evol. 44:S44-S51.
    • (1997) J. Mol. Evol. , vol.44 , pp. S44-S51
    • Bernardi, G.1    Hughes, S.2    Mouchiroud, D.3
  • 4
    • 0011051225 scopus 로고
    • Evolution of the genome and the genetic code: Selection at the dinucleotide level by methylation and polyribonucleotide cleavage
    • Beutler, E., T. Gelbart, J. Han, J. A. Koziol, and B. Beutler. 1989. Evolution of the genome and the genetic code: Selection at the dinucleotide level by methylation and polyribonucleotide cleavage. Proc. Natl. Acad. Sci. USA 86:1992-1996.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 1992-1996
    • Beutler, E.1    Gelbart, T.2    Han, J.3    Koziol, J.A.4    Beutler, B.5
  • 5
    • 0026739088 scopus 로고
    • Evolutionary consequences of nonrandom damage and repair of chromatin domains
    • Boulikas, T. 1992. Evolutionary consequences of nonrandom damage and repair of chromatin domains. J. Mol. Evol. 35:156-180.
    • (1992) J. Mol. Evol. , vol.35 , pp. 156-180
    • Boulikas, T.1
  • 6
    • 0030593377 scopus 로고    scopus 로고
    • The 1.6 angstroms resolution crystal structure of nuclear transport factor 2 (NTF2)
    • Bullock, T. L., W. D. Clarkson, H. M. Kent, and M. Stewart. 1996. The 1.6 angstroms resolution crystal structure of nuclear transport factor 2 (NTF2). J. Mol. Biol. 260:422-431.
    • (1996) J. Mol. Biol. , vol.260 , pp. 422-431
    • Bullock, T.L.1    Clarkson, W.D.2    Kent, H.M.3    Stewart, M.4
  • 7
    • 0026502711 scopus 로고
    • Over- and under-representation of short oligonucleotide in DNA sequences
    • Burge, C., A. M. Campbell, and S. Karlin. 1992. Over- and under-representation of short oligonucleotide in DNA sequences. Proc. Natl. Acad. Sci. USA 89:1358-1362.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 1358-1362
    • Burge, C.1    Campbell, A.M.2    Karlin, S.3
  • 8
    • 0027934526 scopus 로고
    • Single-copy sequence homology among the GC-richest isochores of the genomes from warm-blooded vertebrates
    • CaccioÌ, S., P. Perani, S. Saccone, F. Kadi, and G. Bernardi. 1994. Single-copy sequence homology among the GC-richest isochores of the genomes from warm-blooded vertebrates. J. Mol. Evol. 39:331-339.
    • (1994) J. Mol. Evol. , vol.39 , pp. 331-339
    • CaccioÌ, S.1    Perani, P.2    Saccone, S.3    Kadi, F.4    Bernardi, G.5
  • 9
    • 0026213471 scopus 로고
    • Cyclobutane dimers and (6-4) photoproducts in human cells are mended with the same patch sizes
    • Cleaver, J. E., J. Jen, W. C. Charles, and D. L. Mitchell. 1991. Cyclobutane dimers and (6-4) photoproducts in human cells are mended with the same patch sizes. Photochem. Photobiol. 54:393-402.
    • (1991) Photochem. Photobiol. , vol.54 , pp. 393-402
    • Cleaver, J.E.1    Jen, J.2    Charles, W.C.3    Mitchell, D.L.4
  • 10
    • 0030621127 scopus 로고    scopus 로고
    • Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
    • Cooper, A., and D. Penny. 1997. Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence. Science 275:1109-1113.
    • (1997) Science , vol.275 , pp. 1109-1113
    • Cooper, A.1    Penny, D.2
  • 11
    • 84983847415 scopus 로고
    • Phylogeny and evolution of the ratite birds
    • Cracraft, J. 1974. Phylogeny and evolution of the ratite birds. Ibis 116:494-521.
    • (1974) Ibis , vol.116 , pp. 494-521
    • Cracraft, J.1
  • 13
    • 0030248606 scopus 로고    scopus 로고
    • Plasma thyroxine concentrations in farmed ostriches in relation to age, body weight and growth hormone
    • Dawson, A., D. C. Deeming, A. C. K. Dick, and P. J. Sharp. 1996. Plasma thyroxine concentrations in farmed ostriches in relation to age, body weight and growth hormone. Gen. Comp. Endocrinol. 103:308-315.
    • (1996) Gen. Comp. Endocrinol. , vol.103 , pp. 308-315
    • Dawson, A.1    Deeming, D.C.2    Dick, A.C.K.3    Sharp, P.J.4
  • 16
    • 0032823783 scopus 로고    scopus 로고
    • Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences
    • Deschavanne, P. J., A. Giron, J. Vilain, G. Fagot, and B. Fertil. 1999. Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences. Mol. Biol. Evol. 16:1391-1399.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1391-1399
    • Deschavanne, P.J.1    Giron, A.2    Vilain, J.3    Fagot, G.4    Fertil, B.5
  • 17
    • 0033851037 scopus 로고    scopus 로고
    • A 39-kb sequence around a blackbird MHC class II B gene: Ghost of selection past and songbird genome architecture
    • Edwards, S. V., J. Gasper, D. Garrigan, D. A. Martindale, and B. F. Koop. 2000. A 39-kb sequence around a blackbird MHC class II B gene: Ghost of selection past and songbird genome architecture. Mol. Biol. Evol. 17:1384-1395.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1384-1395
    • Edwards, S.V.1    Gasper, J.2    Garrigan, D.3    Martindale, D.A.4    Koop, B.F.5
  • 18
    • 84983695724 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 20
    • 37049246982 scopus 로고
    • Construction of phylogenetic trees
    • Fitch, W. M., and E. Margoliash. 1967. Construction of phylogenetic trees. Science 155:279-284.
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 21
    • 0033858879 scopus 로고    scopus 로고
    • Cytosine deamination plays a primary role in the evolution of mammalian isochores
    • Fryxell, K. J., and E. Zuckerkandl. 2000. Cytosine deamination plays a primary role in the evolution of mammalian isochores. Mol. Biol. Evol. 17:1371-1383.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1371-1383
    • Fryxell, K.J.1    Zuckerkandl, E.2
  • 22
    • 0034001912 scopus 로고    scopus 로고
    • Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods
    • Garland, T., Jr., and A. R. Ives. 2000. Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods. Am. Nat. 155:346-364.
    • (2000) Am. Nat. , vol.155 , pp. 346-364
    • Garland T., Jr.1    Ives, A.R.2
  • 23
    • 0033159606 scopus 로고    scopus 로고
    • Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene
    • Groth, J. G., and G. F. Barrowclough. 1999. Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Mol. Phylogenet. Evol. 12:115-123.
    • (1999) Mol. Phylogenet. Evol. , vol.12 , pp. 115-123
    • Groth, J.G.1    Barrowclough, G.F.2
  • 24
    • 0035820835 scopus 로고    scopus 로고
    • Complete mitochondrial DNA genome sequences of extinct birds: Ratite phylogenetics and the vicariance biogeography hypothesis
    • Haddrath, O., and A. J. Baker. 2001. Complete mitochondrial DNA genome sequences of extinct birds: Ratite phylogenetics and the vicariance biogeography hypothesis. Proc. R. Soc. Lond. B 268:939-945.
    • (2001) Proc. R. Soc. Lond. B , vol.268 , pp. 939-945
    • Haddrath, O.1    Baker, A.J.2
  • 25
    • 0033531328 scopus 로고    scopus 로고
    • Analyses of mitochondrial DNA nest ratite birds within the Neognathae: Supporting a neotenous origin of ratite morphological characters
    • HaÌrlid, A., and U. Arnason. 1999. Analyses of mitochondrial DNA nest ratite birds within the Neognathae: Supporting a neotenous origin of ratite morphological characters. Proc. R. Soc. Lond. B 266:305-309.
    • (1999) Proc. R. Soc. Lond. B , vol.266 , pp. 305-309
    • HaÌrlid, A.1    Arnason, U.2
  • 26
    • 0025086910 scopus 로고
    • Phylogeny and molecular evolution in primates
    • Hasegawa, M. 1990. Phylogeny and molecular evolution in primates. Jpn. J. Genet. 65:243-266.
    • (1990) Jpn. J. Genet. , vol.65 , pp. 243-266
    • Hasegawa, M.1
  • 27
    • 0034131120 scopus 로고    scopus 로고
    • Ribosomal DNA evidence and disjunctions of western American Portulacaceae
    • Hershkovitz, M. A., and E. A. Zimmer. 2000. Ribosomal DNA evidence and disjunctions of western American Portulacaceae. Mol. Phylogenet. Evol. 15:419-439.
    • (2000) Mol. Phylogenet. Evol. , vol.15 , pp. 419-439
    • Hershkovitz, M.A.1    Zimmer, E.A.2
  • 28
    • 0034126368 scopus 로고    scopus 로고
    • MHC class II pseudogene and genomic signature of a 32-kb cosmid in the House Finch (Carpodacus mexicanus)
    • Hess, C. M., J. Gasper, H. Hoekstra, C. Hill, and S. V. Edwards. 2000. MHC class II pseudogene and genomic signature of a 32-kb cosmid in the House Finch (Carpodacus mexicanus). Genome Res. 10:613-623.
    • (2000) Genome Res. , vol.10 , pp. 613-623
    • Hess, C.M.1    Gasper, J.2    Hoekstra, H.3    Hill, C.4    Edwards, S.V.5
  • 29
    • 0027970591 scopus 로고
    • Chromatin self-organization by mutation bias
    • Holmquist, G. P. 1994. Chromatin self-organization by mutation bias. J. Mol. Evol. 39:436-438.
    • (1994) J. Mol. Evol. , vol.39 , pp. 436-438
    • Holmquist, G.P.1
  • 30
    • 0022904987 scopus 로고
    • Ostrich ancestors found in the Northern Hemisphere suggest new hypotheses of ratite origins
    • Houde, P. W. 1986. Ostrich ancestors found in the Northern Hemisphere suggest new hypotheses of ratite origins. Nature 324:563-565.
    • (1986) Nature , vol.324 , pp. 563-565
    • Houde, P.W.1
  • 32
    • 0032736988 scopus 로고    scopus 로고
    • Warm-blooded isochore structure in the Nile Crocodile and turtle
    • Hughes, S., D. Zelus, and D. Mouchiroud. 1999. Warm-blooded isochore structure in the Nile Crocodile and turtle. Mol. Biol. Evol. 16:1521-1527.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1521-1527
    • Hughes, S.1    Zelus, D.2    Mouchiroud, D.3
  • 33
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • Jeffrey, H. J. 1990. Chaos game representation of gene structure. Nucleic Acids Res. 18:2163-2170.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1
  • 34
    • 0035527384 scopus 로고    scopus 로고
    • Taxon sampling and the phylogenetic position of Passeriformes: Evidence from 916 avian cytochrome b sequences
    • Johnson, K. P. 2001. Taxon sampling and the phylogenetic position of Passeriformes: Evidence from 916 avian cytochrome b sequences. Syst. Biol. 50:128-136.
    • (2001) Syst. Biol. , vol.50 , pp. 128-136
    • Johnson, K.P.1
  • 35
    • 0027369473 scopus 로고
    • The compositional patterns of the avian genomes and their evolutionary implications
    • Kadi, F., D. Mouchiroud, G. Sabeur, and G. Bernardi. 1993. The compositional patterns of the avian genomes and their evolutionary implications. J. Mol. Evol. 37:544-551.
    • (1993) J. Mol. Evol. , vol.37 , pp. 544-551
    • Kadi, F.1    Mouchiroud, D.2    Sabeur, G.3    Bernardi, G.4
  • 36
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: A genomic signature
    • Karlin, S., and C. Burge. 1995. Dinucleotide relative abundance extremes: A genomic signature. Trends Genet. 11:283-290.
    • (1995) Trends Genet. , vol.11 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 37
    • 0028606501 scopus 로고
    • Comparisons of eukaryotic genomic sequences
    • Karlin, S., and I. Ladunga. 1994. Comparisons of eukaryotic genomic sequences. Proc. Natl. Acad. Sci. USA 91:12832-12836.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 12832-12836
    • Karlin, S.1    Ladunga, I.2
  • 38
    • 1842332701 scopus 로고    scopus 로고
    • Compositional biases of bacterial genomes and evolutionary implications
    • Karlin, S., J. MraÌzek, and A. M. Campbell. 1997. Compositional biases of bacterial genomes and evolutionary implications. J. Bacteriol. 179:3899-3901.
    • (1997) J. Bacteriol. , vol.179 , pp. 3899-3901
    • Karlin, S.1    MraÌzek, J.2    Campbell, A.M.3
  • 39
    • 0000341183 scopus 로고
    • Sequences and codes, fundamentals of biomolecular cryptology
    • D. Smith, ed. Academic Press, San Diego
    • Konopka, A. K. 1994. Sequences and codes, fundamentals of biomolecular cryptology. Pages 119-173 in Biocomputing: Informatics and genome projects (D. Smith, ed.). Academic Press, San Diego.
    • (1994) Biocomputing: Informatics and Genome Projects , pp. 119-173
    • Konopka, A.K.1
  • 40
    • 0030902304 scopus 로고    scopus 로고
    • Amino acid substitutions preserve protein folding by conserving steric and hydrophobicity properties
    • Ladunga, I., and R. F. Smith. 1997. Amino acid substitutions preserve protein folding by conserving steric and hydrophobicity properties. Protein Eng. 10:187-196.
    • (1997) Protein Eng. , vol.10 , pp. 187-196
    • Ladunga, I.1    Smith, R.F.2
  • 41
    • 0022596134 scopus 로고
    • Phylogenetic trees constructed from hydrophobicity values of protein sequences
    • Leunissen, J. A., and W. W. De Jong. 1986. Phylogenetic trees constructed from hydrophobicity values of protein sequences. J. Theor. Biol. 119:189-196.
    • (1986) J. Theor. Biol. , vol.119 , pp. 189-196
    • Leunissen, J.A.1    De Jong, W.W.2
  • 42
    • 0028807395 scopus 로고
    • Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA
    • Martin, A. P. 1995. Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA. Mol. Biol. Evol. 12:1124-1131.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1124-1131
    • Martin, A.P.1
  • 44
    • 0031876009 scopus 로고    scopus 로고
    • Chicken microchromosomes are hyperacetylated, early replicating, and gene rich
    • Mcqueen, H. A., G. Siriaco, and A. P. Bird. 1998. Chicken microchromosomes are hyperacetylated, early replicating, and gene rich. Genome Res. 8:621-630.
    • (1998) Genome Res. , vol.8 , pp. 621-630
    • Mcqueen, H.A.1    Siriaco, G.2    Bird, A.P.3
  • 46
    • 0033084950 scopus 로고    scopus 로고
    • Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes
    • Mindell, D. P., M. D. Sorenson, D. E. Dimcheff, M. Hasegawa, J. C. Ast, and T. Yuri. 1999. Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes. Syst. Biol. 48:138-152.
    • (1999) Syst. Biol. , vol.48 , pp. 138-152
    • Mindell, D.P.1    Sorenson, M.D.2    Dimcheff, D.E.3    Hasegawa, M.4    Ast, J.C.5    Yuri, T.6
  • 47
    • 0028834672 scopus 로고
    • Neighboring base composition is strongly correlated with base substitution bias in a region of the chloroplast genome
    • Morton, B. R., and M. T. Clegg. 1995. Neighboring base composition is strongly correlated with base substitution bias in a region of the chloroplast genome. J. Mol. Evol. 41:597-603.
    • (1995) J. Mol. Evol. , vol.41 , pp. 597-603
    • Morton, B.R.1    Clegg, M.T.2
  • 48
    • 0028985207 scopus 로고
    • Hydrophobicity and phylogeny
    • Naylor, G. J., T. M. Collins, and W. M. Brown. 1995. Hydrophobicity and phylogeny. Nature 373:565-566.
    • (1995) Nature , vol.373 , pp. 565-566
    • Naylor, G.J.1    Collins, T.M.2    Brown, W.M.3
  • 49
    • 0021759169 scopus 로고
    • Doublet frequencies in evolutionary distinct groups
    • Nussinov, R. 1984. Doublet frequencies in evolutionary distinct groups. Nucleic Acids Res. 12:1749-1763.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 1749-1763
    • Nussinov, R.1
  • 50
    • 0032516061 scopus 로고    scopus 로고
    • The location of Z- and W-linked marker genes and sequence on the homomorphic sex chromosomes of the ostrich and the emu
    • Ogawa, A., K. Murata, and S. Mizuno. 1998. The location of Z- and W-linked marker genes and sequence on the homomorphic sex chromosomes of the ostrich and the emu. Proc. Natl. Acad. Sci. USA 95:4415-4418.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 4415-4418
    • Ogawa, A.1    Murata, K.2    Mizuno, S.3
  • 51
    • 0001506399 scopus 로고    scopus 로고
    • Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds
    • Paton, T., O. Haddrath, and A. J. Baker. 2002. Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds. Proc. R. Soc. Lond. B 269:839-846.
    • (2002) Proc. R. Soc. Lond. B , vol.269 , pp. 839-846
    • Paton, T.1    Haddrath, O.2    Baker, A.J.3
  • 52
    • 0026566518 scopus 로고
    • Binding of transcription factors creates hot spots for UV photoproducts in vivo
    • Pfeifer, G. P., R. Drouin, A. D. Riggs, and G. P. Holmquist. 1992. Binding of transcription factors creates hot spots for UV photoproducts in vivo. Mol. Cell Biol. 12:1798-1804.
    • (1992) Mol. Cell Biol. , vol.12 , pp. 1798-1804
    • Pfeifer, G.P.1    Drouin, R.2    Riggs, A.D.3    Holmquist, G.P.4
  • 53
    • 0025359462 scopus 로고
    • Linguistic measure of taxonomic and functional relatedness of nucleotide sequences
    • Pietrokovski, S., S. Hirshon, and E. N. Trifonov. 1990. Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. J. Biol. Struct. Dynam. 7:1251-1268.
    • (1990) J. Biol. Struct. Dynam. , vol.7 , pp. 1251-1268
    • Pietrokovski, S.1    Hirshon, S.2    Trifonov, E.N.3
  • 54
    • 0017316934 scopus 로고
    • Evolution of flightless land birds on southern continents: Transferrin comparison shows monophyletic origin of ratites
    • Prager, E. M., A. C. Wilson, D. T. Osuga, and R. E. Feeney. 1976. Evolution of flightless land birds on southern continents: Transferrin comparison shows monophyletic origin of ratites. J. Mol. Evol. 8:283-294.
    • (1976) J. Mol. Evol. , vol.8 , pp. 283-294
    • Prager, E.M.1    Wilson, A.C.2    Osuga, D.T.3    Feeney, R.E.4
  • 56
    • 0002356205 scopus 로고    scopus 로고
    • Using interspecies phylogenies to test macroevolutionary hypotheses
    • P. H. Harvey, A. J. L. Brown, J. M. Smith, and S. Nee, eds. Oxford Univ. Press, Oxford, U.K.
    • Purvis, A. 1996. Using interspecies phylogenies to test macroevolutionary hypotheses. Pages 153-168 in New uses for new phylogenies (P. H. Harvey, A. J. L. Brown, J. M. Smith, and S. Nee, eds.). Oxford Univ. Press, Oxford, U.K.
    • (1996) New Uses for New Phylogenies , pp. 153-168
    • Purvis, A.1
  • 57
    • 0026660413 scopus 로고
    • A simple method for estimating and testing minimum-evolution trees
    • Rzhetsky, A., and M. Nei. 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9:945-967.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 945-967
    • Rzhetsky, A.1    Nei, M.2
  • 58
    • 0028813932 scopus 로고
    • Tests of applicability of several substitution models for DNA sequence data
    • Rzhetsky, A., and M. Nei. 1995. Tests of applicability of several substitution models for DNA sequence data. Mol. Biol. Evol. 12:131-151.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 131-151
    • Rzhetsky, A.1    Nei, M.2
  • 59
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 60
    • 0034887748 scopus 로고    scopus 로고
    • Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier
    • Sandberg, R., G. Winberg, C.-I. BraÌnden, A. Kaske, I. Ernberg, and J. CoÌster. 2001. Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier. Genome Res. 11:1404-1409.
    • (2001) Genome Res. , vol.11 , pp. 1404-1409
    • Sandberg, R.1    Winberg, G.2    BraÌnden, C.-I.3    Kaske, A.4    Ernberg, I.5    CoÌster, J.6
  • 61
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate constancy
    • Sanderson, M. J. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14:1218-1231.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1218-1231
    • Sanderson, M.J.1
  • 62
    • 0031583033 scopus 로고    scopus 로고
    • Information content of individual genetic sequences
    • Schneider, T. D. 1997. Information content of individual genetic sequences. J. Theor. Biol. 189:427-441.
    • (1997) J. Theor. Biol. , vol.189 , pp. 427-441
    • Schneider, T.D.1
  • 63
    • 0033278902 scopus 로고    scopus 로고
    • Toward assigning helical regions in alignments of ribosomal RNA and testing the appropriateness of evolutionary models
    • SchoÌniger, M., and A. Von Haeseler. 1999. Toward assigning helical regions in alignments of ribosomal RNA and testing the appropriateness of evolutionary models. J. Mol. Evol. 49:691-698.
    • (1999) J. Mol. Evol. , vol.49 , pp. 691-698
    • SchoÌniger, M.1    Von Haeseler, A.2
  • 64
    • 0000787344 scopus 로고
    • A comparative study of the egg white proteins of non-passerine birds
    • Sibley, C. G., and J. E. Ahlquist. 1972. A comparative study of the egg white proteins of non-passerine birds. Peabody Mus. Nat. Hist. Bull. 39:1-276.
    • (1972) Peabody Mus. Nat. Hist. Bull. , vol.39 , pp. 1-276
    • Sibley, C.G.1    Ahlquist, J.E.2
  • 65
    • 0000978444 scopus 로고
    • A classification of the living birds of the world based on DNA-DNA hybridization studies
    • Sibley, C. G., and J. E. Ahlquist. 1988. A classification of the living birds of the world based on DNA-DNA hybridization studies. Auk 105:409-423.
    • (1988) Auk , vol.105 , pp. 409-423
    • Sibley, C.G.1    Ahlquist, J.E.2
  • 67
    • 0021180099 scopus 로고
    • Ratites as oldest offshoot of avian stem-Evidence from � crystallin sequences
    • Stapel, S. O., J. A. M. Leunissen, M. Versteeg, J. Wattel, and W. W. De Jong. 1984. Ratites as oldest offshoot of avian stem-Evidence from � crystallin sequences. Nature 311:257-259.
    • (1984) Nature , vol.311 , pp. 257-259
    • Stapel, S.O.1    Leunissen, J.A.M.2    Versteeg, M.3    Wattel, J.4    De Jong, W.W.5
  • 68
    • 0027180533 scopus 로고
    • Confidence in evolutionary trees from biological sequence data
    • Steel, M. A., P. J. Lockhart, and D. Penny. 1993. Confidence in evolutionary trees from biological sequence data. Nature 364:440-442.
    • (1993) Nature , vol.364 , pp. 440-442
    • Steel, M.A.1    Lockhart, P.J.2    Penny, D.3
  • 69
    • 0032875445 scopus 로고    scopus 로고
    • The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models
    • Sullivan, J., D. L. Swofford, and G. J. P. Naylor. 1999. The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models. Mol. Biol. Evol. 16:1347-1356.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1347-1356
    • Sullivan, J.1    Swofford, D.L.2    Naylor, G.J.P.3
  • 70
    • 0031028657 scopus 로고    scopus 로고
    • Comparison of protein structures using 3D profile alignment
    • Suyama, M., Y. Matsuo, and K. Nishikawa. 1997. Comparison of protein structures using 3D profile alignment. J. Mol. Evol. 44:S163-S173.
    • (1997) J. Mol. Evol. , vol.44 , pp. S163-S173
    • Suyama, M.1    Matsuo, Y.2    Nishikawa, K.3
  • 72
    • 0034000984 scopus 로고    scopus 로고
    • The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes
    • Van Tuinen, M., C. G. Sibley, and S. B. Hedges. 2000. The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes. Mol. Biol. Evol. 17:451-457.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 451-457
    • Tuinen, V.A.N.M.1    Sibley, C.G.2    Hedges, S.B.3
  • 73
    • 0036841106 scopus 로고    scopus 로고
    • The evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs
    • in press
    • Waltari, E., and S. V. Edwards. 2002. The evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs. Am. Nat. (in press).
    • (2002) Am. Nat.
    • Waltari, E.1    Edwards, S.V.2
  • 74
    • 0027422858 scopus 로고
    • Mammalian gene evolution: Nucleotide sequence divergence between mouse and rat
    • Wolfe, K. H., and P. M. Sharp. 1993. Mammalian gene evolution: Nucleotide sequence divergence between mouse and rat. J. Mol. Evol. 37:441-456.
    • (1993) J. Mol. Evol. , vol.37 , pp. 441-456
    • Wolfe, K.H.1    Sharp, P.M.2
  • 75
    • 0033004740 scopus 로고    scopus 로고
    • Estimation of the transition/transversion rate bias and species sampling
    • Yang, Z. H., and A. D. Yoder. 1999. Estimation of the transition/transversion rate bias and species sampling. J. Mol. Evol. 48:274-283.
    • (1999) J. Mol. Evol. , vol.48 , pp. 274-283
    • Yang, Z.H.1    Yoder, A.D.2
  • 76
    • 0032573432 scopus 로고    scopus 로고
    • Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells
    • Ye, N., G. P. Holmquist, and T. R. O'connor. 1998. Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells. J. Mol. Biol. 284:269-285.
    • (1998) J. Mol. Biol. , vol.284 , pp. 269-285
    • Ye, N.1    Holmquist, G.P.2    O'Connor, T.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.