-
1
-
-
0036469913
-
The connection between transcription and genomic instability
-
Aguilera, A. 2002. The connection between transcription and genomic instability. EMBO J. 21: 195-201.
-
(2002)
EMBO J
, vol.21
, pp. 195-201
-
-
Aguilera, A.1
-
2
-
-
9144232912
-
UniProt: The universal protein knowledgebase
-
Apweiler, R., Bairoch, A., Wu, C.H., Barker, W.C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., et al. 2004. UniProt: The universal protein knowledgebase. Nucleic Acids Res. 32: D115-D119. http://www.expasy.uniprot.org/about/publications.shtml
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
-
3
-
-
34249093040
-
Reduced X-linked diversity in derived populations of house mice
-
Baines, J.F. and Harr, B. 2007. Reduced X-linked diversity in derived populations of house mice. Genetics 175: 1911-1921.
-
(2007)
Genetics
, vol.175
, pp. 1911-1921
-
-
Baines, J.F.1
Harr, B.2
-
4
-
-
0032584913
-
Correlation of chi orientation with transcription indicates a fundamental relationship between recombination and transcription
-
Bell, S.J., Chow, Y.C., Ho, J.Y., and Forsdyke, D.R. 1998. Correlation of chi orientation with transcription indicates a fundamental relationship between recombination and transcription. Gene 216: 285-292.
-
(1998)
Gene
, vol.216
, pp. 285-292
-
-
Bell, S.J.1
Chow, Y.C.2
Ho, J.Y.3
Forsdyke, D.R.4
-
5
-
-
2942684863
-
The decline of isochores in mammals: An assessment of the GC content variation along the mammalian phylogeny
-
Belle, E.M.S., Duret, L., Galtier, N., and Eyre-Walker, A. 2004. The decline of isochores in mammals: An assessment of the GC content variation along the mammalian phylogeny. J. Mol. Evol. 58: 653-660.
-
(2004)
J. Mol. Evol
, vol.58
, pp. 653-660
-
-
Belle, E.M.S.1
Duret, L.2
Galtier, N.3
Eyre-Walker, A.4
-
6
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Statist. Soc. Ser. B (Methodol.) 57: 289-300.
-
(1995)
J. R. Statist. Soc. Ser. B (Methodol.)
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
7
-
-
0345865009
-
GenBank: Update
-
doi: 10.1093/nar/gkh045
-
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., and Wheeler, D.L. 2004. GenBank: Update. Nucleic Acids Res. 32: D23-D26. doi: 10.1093/nar/gkh045.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
8
-
-
13444304389
-
GenBank
-
doi: 10.1093/nar/gki063
-
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., and Wheeler, D.L. 2005. GenBank. Nucleic Acids Res. 33: D34-D38. doi: 10.1093/nar/gki063.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
9
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi, G. 2000. Isochores and the evolutionary genomics of vertebrates. Gene 241: 3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
10
-
-
0022914759
-
Compositional constraints and genome evolution
-
Bernardi, G. and Bernardi, G. 1986. Compositional constraints and genome evolution. J. Mol. Evol. 24: 1-11.
-
(1986)
J. Mol. Evol
, vol.24
, pp. 1-11
-
-
Bernardi, G.1
Bernardi, G.2
-
11
-
-
0021810948
-
The mosaic genome of warm-blooded vertebrates
-
Bernardi, G., Olofsson, B., Filipski, J., Zerial, M., Salinas, J., Cuny, G., Meunier-Rotival, M., and Rodier, F. 1985. The mosaic genome of warm-blooded vertebrates. Science 228: 953-958.
-
(1985)
Science
, vol.228
, pp. 953-958
-
-
Bernardi, G.1
Olofsson, B.2
Filipski, J.3
Zerial, M.4
Salinas, J.5
Cuny, G.6
Meunier-Rotival, M.7
Rodier, F.8
-
12
-
-
0035986891
-
Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution
-
Birdsell, J.A. 2002. Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution. Mol. Biol. Evol. 19: 1181-1197.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 1181-1197
-
-
Birdsell, J.A.1
-
13
-
-
0023803187
-
Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells
-
Brown, T.C. and Jiricny, J. 1988. Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells. Cell 54: 705-711.
-
(1988)
Cell
, vol.54
, pp. 705-711
-
-
Brown, T.C.1
Jiricny, J.2
-
14
-
-
0000093674
-
Modeling dependencies in pre-mRNA splicing signals
-
eds. S. Salzberg et al, pp, Elsevier Science, Amsterdam
-
Burge, C. 1998. Modeling dependencies in pre-mRNA splicing signals. In Computational methods in molecular biology (eds. S. Salzberg et al.), pp. 127-163. Elsevier Science, Amsterdam. http://www.cs.jhu.edu/%7Esalzberg/ compbio-book.html
-
(1998)
Computational methods in molecular biology
, pp. 127-163
-
-
Burge, C.1
-
15
-
-
0038702256
-
Dipeptidyl peptidase IV gene family. The DPIV family
-
Chen, T., Ajami, K., McCaughan, G.W., Gorrell, M.D., and Abbott, C.A. 2003. Dipeptidyl peptidase IV gene family. The DPIV family. Adv. Exp. Med. Biol. 524: 79-86.
-
(2003)
Adv. Exp. Med. Biol
, vol.524
, pp. 79-86
-
-
Chen, T.1
Ajami, K.2
McCaughan, G.W.3
Gorrell, M.D.4
Abbott, C.A.5
-
16
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Chimpanzee Sequencing and Analysis Consortium
-
Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
17
-
-
0027511662
-
How much do we know about spontaneous human mutation rates?
-
Crow, J.F. 1993. How much do we know about spontaneous human mutation rates? Environ. Mol. Mutagen. 21: 122-129.
-
(1993)
Environ. Mol. Mutagen
, vol.21
, pp. 122-129
-
-
Crow, J.F.1
-
18
-
-
34948908867
-
Biased clustered substitutions in the human genome: Sex, gambling and non-Darwinian evolution
-
M.S. thesis, University of California, Santa Cruz
-
Dreszer, T. 2006. "Biased clustered substitutions in the human genome: Sex, gambling and non-Darwinian evolution." M.S. thesis, University of California, Santa Cruz. http://www.soe.ucsc.edu/research/compbio/ubcs/ Thesis.pdf
-
(2006)
-
-
Dreszer, T.1
-
19
-
-
0036889468
-
Evolution of synonymous codon usage in metazoans
-
Duret, L. 2002. Evolution of synonymous codon usage in metazoans. Curr. Opin. Genet. Dev. 12: 640-649.
-
(2002)
Curr. Opin. Genet. Dev
, vol.12
, pp. 640-649
-
-
Duret, L.1
-
20
-
-
33751511707
-
A new perspective on isochore evolution
-
Duret, L., Eyre-Walker, A., and Galtier, N. 2006. A new perspective on isochore evolution. Gene 385: 71-74.
-
(2006)
Gene
, vol.385
, pp. 71-74
-
-
Duret, L.1
Eyre-Walker, A.2
Galtier, N.3
-
21
-
-
0036959203
-
Vanishing GC-rich isochores in mammalian genomes
-
Duret, L., Semon, M., Piganeau, G., Mouchiroud, D., and Galtier, N. 2002. Vanishing GC-rich isochores in mammalian genomes. Genetics 162: 1837-1847.
-
(2002)
Genetics
, vol.162
, pp. 1837-1847
-
-
Duret, L.1
Semon, M.2
Piganeau, G.3
Mouchiroud, D.4
Galtier, N.5
-
22
-
-
0027183991
-
Recombination and mammalian genome evolution
-
Eyre-Walker, A. 1993. Recombination and mammalian genome evolution. Proc. Biol. Sci. 252: 237-243.
-
(1993)
Proc. Biol. Sci
, vol.252
, pp. 237-243
-
-
Eyre-Walker, A.1
-
23
-
-
0033018384
-
Evidence of selection on silent site base composition in mammals: Potential implications for the evolution of isochores and junk DNA
-
Eyre-Walker, A. 1999. Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA. Genetics 152: 675-683.
-
(1999)
Genetics
, vol.152
, pp. 675-683
-
-
Eyre-Walker, A.1
-
25
-
-
0036274194
-
Substitution rates in the X- and Y-linked genes of the plants, Silene latifolia and S. dioica
-
Filatov, D.A. and Charlesworth, D. 2002. Substitution rates in the X- and Y-linked genes of the plants, Silene latifolia and S. dioica. Mol. Biol. Evol. 19: 898-907.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 898-907
-
-
Filatov, D.A.1
Charlesworth, D.2
-
26
-
-
0033858879
-
Cytosine deamination plays a primary role in the evolution of mammalian isochores
-
Fryxell, K.J. and Zuckerkandl, E. 2000. Cytosine deamination plays a primary role in the evolution of mammalian isochores. Mol. Biol. Evol. 17: 1371-1383.
-
(2000)
Mol. Biol. Evol
, vol.17
, pp. 1371-1383
-
-
Fryxell, K.J.1
Zuckerkandl, E.2
-
27
-
-
23744486255
-
The scale of mutational variation in the murid genome
-
Gaffney, D.J. and Keightley, P.D. 2005. The scale of mutational variation in the murid genome. Genome Res. 15: 1086-1094.
-
(2005)
Genome Res
, vol.15
, pp. 1086-1094
-
-
Gaffney, D.J.1
Keightley, P.D.2
-
28
-
-
33750236839
-
Mammalian male mutation bias: Impacts of generation time and regional variation in substitution rates
-
Goetting-Minesky, M.P. and Makova, K.D. 2006. Mammalian male mutation bias: Impacts of generation time and regional variation in substitution rates. J. Mol. Evol. 63: 537-544.
-
(2006)
J. Mol. Evol
, vol.63
, pp. 537-544
-
-
Goetting-Minesky, M.P.1
Makova, K.D.2
-
29
-
-
1242352075
-
Low levels of nucleotide diversity in mammalian Y chromosomes
-
Hellborg, L. and Ellegren, H. 2004. Low levels of nucleotide diversity in mammalian Y chromosomes. Mol. Biol. Evol. 21: 158-163.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 158-163
-
-
Hellborg, L.1
Ellegren, H.2
-
30
-
-
2942609334
-
Concepts in sperm heterogeneity, sperm selection and sperm competition as biological foundations for laboratory tests of semen quality
-
Holt, W.V. and Van Look, K.J. 2004. Concepts in sperm heterogeneity, sperm selection and sperm competition as biological foundations for laboratory tests of semen quality. Reproduction 127: 527-535.
-
(2004)
Reproduction
, vol.127
, pp. 527-535
-
-
Holt, W.V.1
Van Look, K.J.2
-
31
-
-
0026040880
-
Origin of human chromosome 2: An ancestral telomere-telomere fusion
-
Ijdo, J., Baldini, A., Ward, D.C., Reeders, S.T., and Wells, R.A. 1991. Origin of human chromosome 2: An ancestral telomere-telomere fusion. Proc. Natl. Acad. Sci. 88: 9051-9055.
-
(1991)
Proc. Natl. Acad. Sci
, vol.88
, pp. 9051-9055
-
-
Ijdo, J.1
Baldini, A.2
Ward, D.C.3
Reeders, S.T.4
Wells, R.A.5
-
32
-
-
79959524146
-
A haplotype map of the human genome
-
International HapMap Consortium
-
International HapMap Consortium. 2005. A haplotype map of the human genome. Nature 437: 1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
33
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
International SNP Map Working Group
-
International SNP Map Working Group. 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
-
34
-
-
0036649022
-
Reciprocal crossover asymmetry and meiotic drive in a human recombination hot spot
-
Jeffreys, A.J. and Neumann, R. 2002. Reciprocal crossover asymmetry and meiotic drive in a human recombination hot spot. Nat. Genet. 31: 267-271.
-
(2002)
Nat. Genet
, vol.31
, pp. 267-271
-
-
Jeffreys, A.J.1
Neumann, R.2
-
36
-
-
0037250168
-
The UCSC genome browser database
-
Karolchik, D., Baertsch, R., Diekhans, M., Furey, T.S., Hinrichs, A., Lu, Y.T., Roskin, K.M., Schwartz, M., Sugnet, C.W., Thomas, D.J., et al. 2003. The UCSC genome browser database. Nucleic Acids Res. 31: 51-54.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
-
37
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J., Sugnet, C.W., Furey, T.S., Roskin, K.M., Pringle, T.H., Zahler, A.M., and Haussler, D. 2002. The human genome browser at UCSC. Genome Res. 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
38
-
-
0030200438
-
Heteromultimerization and NMDA receptor-clustering activity of Chapsyn-110, a member of the PSD-95 family of proteins
-
Kim, E., Cho, K.O., Rothschild, A., and Sheng, M. 1996. Heteromultimerization and NMDA receptor-clustering activity of Chapsyn-110, a member of the PSD-95 family of proteins. Neuron 17: 103-113.
-
(1996)
Neuron
, vol.17
, pp. 103-113
-
-
Kim, E.1
Cho, K.O.2
Rothschild, A.3
Sheng, M.4
-
39
-
-
18544381909
-
A high-resolution recombination map of the human genome
-
Kong, A., Gudbjartsson, D.F., Sainz, J., Jonsdottir, G.M., Gudjonsson, S.A., Richardsson, B., Sigurdardottir, S., Barnard, J., Hallbeck, B., Masson, G., et al. 2002. A high-resolution recombination map of the human genome. Nat. Genet. 31: 241-247.
-
(2002)
Nat. Genet
, vol.31
, pp. 241-247
-
-
Kong, A.1
Gudbjartsson, D.F.2
Sainz, J.3
Jonsdottir, G.M.4
Gudjonsson, S.A.5
Richardsson, B.6
Sigurdardottir, S.7
Barnard, J.8
Hallbeck, B.9
Masson, G.10
-
40
-
-
33745198703
-
High guanine and cytosine content increases mRNA levels in mammalian cells
-
doi 10.1371/journal.pbio.0040180
-
Kudla, G., Lipinski, L., Caffin, F., Helwak, A., and Zylicz, M. 2006. High guanine and cytosine content increases mRNA levels in mammalian cells. PLoS Biol. 4: e18. doi 10.1371/journal.pbio.0040180.
-
(2006)
PLoS Biol
, vol.4
-
-
Kudla, G.1
Lipinski, L.2
Caffin, F.3
Helwak, A.4
Zylicz, M.5
-
41
-
-
0034748984
-
Local similarity in evolutionary rates extends over whole chromosomes in human-rodent and mouse-rat comparisons: Implications for understanding the mechanistic basis of the male mutation bias
-
Lercher, M.J., Williams, E.J., and Hurst, L.D. 2001. Local similarity in evolutionary rates extends over whole chromosomes in human-rodent and mouse-rat comparisons: Implications for understanding the mechanistic basis of the male mutation bias. Mol. Biol. Evol. 18: 2032-2039.
-
(2001)
Mol. Biol. Evol
, vol.18
, pp. 2032-2039
-
-
Lercher, M.J.1
Williams, E.J.2
Hurst, L.D.3
-
42
-
-
12244264796
-
The evolution of isochores: Evidence from SNP frequency distributions
-
Lercher, M.J., Smith, N.G.C., Eyre-Walker, A., and Hurst, L.D. 2002. The evolution of isochores: evidence from SNP frequency distributions. Genetics 162: 1805-1810.
-
(2002)
Genetics
, vol.162
, pp. 1805-1810
-
-
Lercher, M.J.1
Smith, N.G.C.2
Eyre-Walker, A.3
Hurst, L.D.4
-
43
-
-
0141506898
-
A unification of mosaic structures in the human genome
-
Lercher, M.J., Urrutia, A.O., Pavlícek, A., and Hurst, L.D. 2003. A unification of mosaic structures in the human genome. Hum. Mol. Genet. 12: 2411-2415.
-
(2003)
Hum. Mol. Genet
, vol.12
, pp. 2411-2415
-
-
Lercher, M.J.1
Urrutia, A.O.2
Pavlícek, A.3
Hurst, L.D.4
-
44
-
-
0036889392
-
Male-driven evolution
-
Li, W.H., Yi, S., and Makova, K. 2002. Male-driven evolution. Curr. Opin. Genet. Dev. 12: 650-656.
-
(2002)
Curr. Opin. Genet. Dev
, vol.12
, pp. 650-656
-
-
Li, W.H.1
Yi, S.2
Makova, K.3
-
45
-
-
33644864705
-
A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution
-
Lipatov, M., Arndt, P.F., Hwa, T., and Petrov, D.A. 2006. A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution. J. Mol. Evol. 62: 168-175.
-
(2006)
J. Mol. Evol
, vol.62
, pp. 168-175
-
-
Lipatov, M.1
Arndt, P.F.2
Hwa, T.3
Petrov, D.A.4
-
46
-
-
0036948404
-
Origins of spontaneous mutations: Specificity and directionality of base-substitution, frameshift, and sequence-substitution mutageneses
-
Maki, H. 2002. Origins of spontaneous mutations: Specificity and directionality of base-substitution, frameshift, and sequence-substitution mutageneses. Annu. Rev. Genet. 36: 279-303.
-
(2002)
Annu. Rev. Genet
, vol.36
, pp. 279-303
-
-
Maki, H.1
-
47
-
-
0027339423
-
Mouse 5-hydroxytryptamine5A and 5-hydroxytryptamine5B receptors define a new family of serotonin receptors: Cloning, functional expression, and chromosomal localization
-
Matthes, H., Boschert, U., Amlaiky, N., Grailhe, R., Plassat, J.L., Muscatelli, F., Mattei, M.G., and Hen, R. 1993. Mouse 5-hydroxytryptamine5A and 5-hydroxytryptamine5B receptors define a new family of serotonin receptors: Cloning, functional expression, and chromosomal localization. Mol. Pharmacol. 43: 313-319.
-
(1993)
Mol. Pharmacol
, vol.43
, pp. 313-319
-
-
Matthes, H.1
Boschert, U.2
Amlaiky, N.3
Grailhe, R.4
Plassat, J.L.5
Muscatelli, F.6
Mattei, M.G.7
Hen, R.8
-
48
-
-
2442651458
-
Recombination drives the evolution of GC-content in the human genome
-
Meunier, J. and Duret, L. 2004. Recombination drives the evolution of GC-content in the human genome. Mol. Biol. Evol. 21: 984-990.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 984-990
-
-
Meunier, J.1
Duret, L.2
-
49
-
-
26844482093
-
A fine-scale map of recombination rates and hotspots across the human genome
-
Myers, S., Bottolo, L., Freeman, C., McVean, G., and Donnelly, P. 2005. A fine-scale map of recombination rates and hotspots across the human genome. Science 310: 321-324.
-
(2005)
Science
, vol.310
, pp. 321-324
-
-
Myers, S.1
Bottolo, L.2
Freeman, C.3
McVean, G.4
Donnelly, P.5
-
50
-
-
0021077332
-
Evolution of a finite population under gene conversion
-
Nagylaki, T. 1983. Evolution of a finite population under gene conversion. Proc. Natl. Acad. Sci. 80: 6278-6281.
-
(1983)
Proc. Natl. Acad. Sci
, vol.80
, pp. 6278-6281
-
-
Nagylaki, T.1
-
51
-
-
1342345645
-
-
National Center for Biotechnology Information, National Library of Medicine U.S, National Center for Biotechnology Information, Bethesda, MD
-
National Center for Biotechnology Information. 2002. NCBI handbook. National Library of Medicine (U.S.), National Center for Biotechnology Information, Bethesda, MD. http://www.ncbi.nlm.nih.gov/entrez/ query.fcgi?db=Books.
-
(2002)
NCBI handbook
-
-
-
52
-
-
0037432734
-
Chromosomal speciation and molecular divergence - Accelerated evolution in rearranged chromosomes
-
Navarro, A. and Barton, N.H. 2003. Chromosomal speciation and molecular divergence - Accelerated evolution in rearranged chromosomes. Science 300: 321-324.
-
(2003)
Science
, vol.300
, pp. 321-324
-
-
Navarro, A.1
Barton, N.H.2
-
53
-
-
0025140542
-
Transcription stimulates homologous recombination in mammalian cells
-
Nickoloff, J.A. and Reynolds, R.J. 1990. Transcription stimulates homologous recombination in mammalian cells. Mol. Cell. Biol. 10: 4837-4845.
-
(1990)
Mol. Cell. Biol
, vol.10
, pp. 4837-4845
-
-
Nickoloff, J.A.1
Reynolds, R.J.2
-
54
-
-
33745591114
-
Genetic evidence for complex speciation of humans and chimpanzees
-
Patterson, N., Richter, D.J., Gnerre, S., Lander, E.S., and Reich, D. 2006. Genetic evidence for complex speciation of humans and chimpanzees. Nature 441: 1103-1108.
-
(2006)
Nature
, vol.441
, pp. 1103-1108
-
-
Patterson, N.1
Richter, D.J.2
Gnerre, S.3
Lander, E.S.4
Reich, D.5
-
55
-
-
18844419731
-
Persistence and loss of meiotic recombination hotspots
-
Pineda-Krch, M. and Redfield, R.J. 2005. Persistence and loss of meiotic recombination hotspots. Genetics 169: 2319-2333.
-
(2005)
Genetics
, vol.169
, pp. 2319-2333
-
-
Pineda-Krch, M.1
Redfield, R.J.2
-
56
-
-
33750428182
-
Forces shaping the fastest evolving regions in the human genome
-
doi: 10.1371/journal.pgen.0020168
-
Pollard, K.S., Salama, S.R., King, B., Kern, A., Dreszer, T., Katzman, S., Siepel, A., Pedersen, J., Bejerano, G., Baertsch, R., et al. 2006a. Forces shaping the fastest evolving regions in the human genome. PLoS Genet. 2: e168. doi: 10.1371/journal.pgen.0020168.
-
(2006)
PLoS Genet
, vol.2
-
-
Pollard, K.S.1
Salama, S.R.2
King, B.3
Kern, A.4
Dreszer, T.5
Katzman, S.6
Siepel, A.7
Pedersen, J.8
Bejerano, G.9
Baertsch, R.10
-
57
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humans
-
Pollard, K.S., Salama, S.R., Lambert, N., Lambot, M.A., Coppens, S., Pedersen, J.S., Katzman, S., King, B., Onodera, C., Siepel, A., et al. 2006b. An RNA gene expressed during cortical development evolved rapidly in humans. Nature 443: 167-172.
-
(2006)
Nature
, vol.443
, pp. 167-172
-
-
Pollard, K.S.1
Salama, S.R.2
Lambert, N.3
Lambot, M.A.4
Coppens, S.5
Pedersen, J.S.6
Katzman, S.7
King, B.8
Onodera, C.9
Siepel, A.10
-
59
-
-
33750448278
-
Isochores exhibit evidence of genes interacting with the large-scale genomic environment
-
Press, W.H. and Robins, H. 2006. Isochores exhibit evidence of genes interacting with the large-scale genomic environment. Genetics 174: 1029-1040.
-
(2006)
Genetics
, vol.174
, pp. 1029-1040
-
-
Press, W.H.1
Robins, H.2
-
60
-
-
1842607847
-
-
R Development Core Team, Vienna, Austria: R Foundation for Statistical Computing
-
R Development Core Team. 2004. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing, 3-900051-07-0. http://www.r-project.org/index.html.
-
(2004)
R: A language and environment for statistical computing
-
-
-
61
-
-
34247352040
-
Evolutionary and biomedical insights from the rhesus macaque genome
-
Rhesus Macaque Genome Sequencing Consortium
-
Rhesus Macaque Genome Sequencing Consortium. 2007. Evolutionary and biomedical insights from the rhesus macaque genome. Science 316: 222-234.
-
(2007)
Science
, vol.316
, pp. 222-234
-
-
-
62
-
-
33846554700
-
The rate, not the spectrum, of base pair substitutions changes at a GC-content transition in the human NF1 gene region: Implications for the evolution of the mammalian genome structure
-
Schmegner, C., Hoegel, J., Vogel, W., and Assum, G. 2007. The rate, not the spectrum, of base pair substitutions changes at a GC-content transition in the human NF1 gene region: Implications for the evolution of the mammalian genome structure. Genetics 175: 421-428.
-
(2007)
Genetics
, vol.175
, pp. 421-428
-
-
Schmegner, C.1
Hoegel, J.2
Vogel, W.3
Assum, G.4
-
63
-
-
0141993660
-
The role of CSMD1 in head and neck carcinogenesis
-
Scholnick, S.B. and Richter, T.M. 2003. The role of CSMD1 in head and neck carcinogenesis. Genes Chromosomes Cancer 38: 281-283.
-
(2003)
Genes Chromosomes Cancer
, vol.38
, pp. 281-283
-
-
Scholnick, S.B.1
Richter, T.M.2
-
64
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S., et al. 2005. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15: 1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
65
-
-
0023991945
-
Directional mutation pressure and neutral molecular evolution
-
Sueoka, N. 1988. Directional mutation pressure and neutral molecular evolution. Proc. Natl. Acad. Sci. 85: 2653-2657.
-
(1988)
Proc. Natl. Acad. Sci
, vol.85
, pp. 2653-2657
-
-
Sueoka, N.1
-
66
-
-
0030467030
-
Neutral theory of molecular evolution
-
Takahata, N. 1996. Neutral theory of molecular evolution. Curr. Opin. Genet. Dev. 6: 767-772.
-
(1996)
Curr. Opin. Genet. Dev
, vol.6
, pp. 767-772
-
-
Takahata, N.1
-
67
-
-
0345411919
-
Isochores and tissue-specificity
-
doi: 10.1093/nar/gkg699
-
Vinogradov, A.E. 2003. Isochores and tissue-specificity. Nucleic Acids Res. 31: 5212-5220. doi: 10.1093/nar/gkg699.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5212-5220
-
-
Vinogradov, A.E.1
-
68
-
-
0028324441
-
Characterization and tissue-specific expression of the human 'very low density lipoprotein (VLDL) receptor' mRNA
-
Webb, J.C., Patel, D.D., Jones, M.D., Knight, B.L., and Soutar, A.K. 1994. Characterization and tissue-specific expression of the human 'very low density lipoprotein (VLDL) receptor' mRNA. Hum. Mol. Genet. 3: 531-537.
-
(1994)
Hum. Mol. Genet
, vol.3
, pp. 531-537
-
-
Webb, J.C.1
Patel, D.D.2
Jones, M.D.3
Knight, B.L.4
Soutar, A.K.5
-
69
-
-
1242293743
-
Fixation biases affecting human SNPs
-
Webster, M.T. and Smith, N.G. 2004. Fixation biases affecting human SNPs. Trends Genet. 20: 122-126.
-
(2004)
Trends Genet
, vol.20
, pp. 122-126
-
-
Webster, M.T.1
Smith, N.G.2
-
70
-
-
0037326506
-
Compositional evolution of non-coding DNA in the human and chimpanzee genomes
-
Webster, M.T., Smith, N.G.C., and Ellegren, H. 2003. Compositional evolution of non-coding DNA in the human and chimpanzee genomes. Mol. Biol. Evol. 20: 278-286.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 278-286
-
-
Webster, M.T.1
Smith, N.G.C.2
Ellegren, H.3
-
71
-
-
19544384915
-
Male-driven biased gene conversion governs the evolution of base composition in human Alu repeats
-
Webster, M.T., Smith, N.G.C., Hultin-Rosenberg, L., Arndt, P.F., and Ellegren, H. 2005. Male-driven biased gene conversion governs the evolution of base composition in human Alu repeats. Mol. Biol. Evol. 22: 1468-1474.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1468-1474
-
-
Webster, M.T.1
Smith, N.G.C.2
Hultin-Rosenberg, L.3
Arndt, P.F.4
Ellegren, H.5
-
72
-
-
0031682085
-
In silico-initiated cloning and molecular characterization of a novel human member of the L1 gene family of neural cell adhesion molecules
-
Wei, M.-H., Karavanova, I., Ivanov, S.V., Popescu, N.C., Keck, C.L., Pack, S., Eisen, J.A., and Lerman, M.I. 1998. In silico-initiated cloning and molecular characterization of a novel human member of the L1 gene family of neural cell adhesion molecules. Hum. Genet. 103: 355-364.
-
(1998)
Hum. Genet
, vol.103
, pp. 355-364
-
-
Wei, M.-H.1
Karavanova, I.2
Ivanov, S.V.3
Popescu, N.C.4
Keck, C.L.5
Pack, S.6
Eisen, J.A.7
Lerman, M.I.8
-
73
-
-
20144387806
-
Comparison of fine-scale recombination rates in humans and chimpanzees
-
Winckler, W., Myers, S.R., Richter, D.J., Onofrio, R.C., McDonald, G.J., Bontrop, R.E., McVean, G.A.T., Gabriel, S.B., Reich, D., Donnelly, P., et al. 2005. Comparison of fine-scale recombination rates in humans and chimpanzees. Science 308: 107-111.
-
(2005)
Science
, vol.308
, pp. 107-111
-
-
Winckler, W.1
Myers, S.R.2
Richter, D.J.3
Onofrio, R.C.4
McDonald, G.J.5
Bontrop, R.E.6
McVean, G.A.T.7
Gabriel, S.B.8
Reich, D.9
Donnelly, P.10
-
74
-
-
0024497416
-
Mutation rates differ among regions of the mammalian genome
-
Wolfe, K.H., Sharp, P.M., and Li, W. 1989. Mutation rates differ among regions of the mammalian genome. Nature 337: 283-285.
-
(1989)
Nature
, vol.337
, pp. 283-285
-
-
Wolfe, K.H.1
Sharp, P.M.2
Li, W.3
-
75
-
-
0035865094
-
Comparison of human genetic and sequence-based physical maps
-
Yu, A., Zhao, C., Fan, Y., Jang, W., Mungall, A.J., Deloukas, P., Olsen, A., Doggett, A., Ghebranious, N., Broman, K.W., et al. 2001. Comparison of human genetic and sequence-based physical maps. Nature 409: 951-953.
-
(2001)
Nature
, vol.409
, pp. 951-953
-
-
Yu, A.1
Zhao, C.2
Fan, Y.3
Jang, W.4
Mungall, A.J.5
Deloukas, P.6
Olsen, A.7
Doggett, A.8
Ghebranious, N.9
Broman, K.W.10
-
76
-
-
34948882482
-
Identification and characterization of TDE2, a plasma-membrane protein with 11 transmembrane helices, and its variable expression in human lung cancer and liver cancer tissues
-
Zhang M., Yu L., Wu Q., Zheng L.H., Wei Y.H., Wan B., and Zhao S.Y. 2003. Identification and characterization of TDE2, a plasma-membrane protein with 11 transmembrane helices, and its variable expression in human lung cancer and liver cancer tissues. Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases. http://www.expasy.org/uniprot/Q9NRX5.
-
(2003)
Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases
-
-
Zhang, M.1
Yu, L.2
Wu, Q.3
Zheng, L.H.4
Wei, Y.H.5
Wan, B.6
Zhao, S.Y.7
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