-
1
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike, H. 1974. A new look at the statistical model identification. IEEE T. Automat. contr. 19:716-723.
-
(1974)
IEEE T. Automat. contr.
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
33750627310
-
Ectomycorrhizas-out of Africa?
-
Alexander, I. 2006. Ectomycorrhizas-out of Africa? New Phytol. 172:589-591.
-
(2006)
New Phytol.
, vol.172
, pp. 589-591
-
-
Alexander, I.1
-
3
-
-
0037393246
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
-
The Angiosperm Phylogeny Group.
-
The Angiosperm Phylogeny Group. 2003. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot. J. Linn. Soc. 141:399-436.
-
(2003)
Bot. J. Linn. Soc.
, vol.141
, pp. 399-436
-
-
-
4
-
-
0000703477
-
Phylogenetic relationships in the genus Hebeloma based on ITS1 and 2 sequences, with special emphasis on the Hebeloma crustulineforme complex
-
Aanen, D. K., T. W. Kuyper, T. Boekhout, and R. F. Hoekstra 2000a. Phylogenetic relationships in the genus Hebeloma based on ITS1 and 2 sequences, with special emphasis on the Hebeloma crustulineforme complex. Mycologia 92:269-281.
-
(2000)
Mycologia
, vol.92
, pp. 269-281
-
-
Aanen, D.K.1
Kuyper, T.W.2
Boekhout, T.3
Hoekstra, R.F.4
-
5
-
-
0033827074
-
The evolution of reproductive isolation in the ectomycorrhizal Hebeloma crustuliniforme aggregate (Basidiomycetes) in Northwestern Europe: a phylogenetic approach
-
Aanen, D. K., T. W. Kuyper, T. H. M. Mes, and R. F. Hoekstra 2000b. The evolution of reproductive isolation in the ectomycorrhizal Hebeloma crustuliniforme aggregate (Basidiomycetes) in Northwestern Europe: a phylogenetic approach. Evolution 54:1192-1206.
-
(2000)
Evolution
, vol.54
, pp. 1192-1206
-
-
Aanen, D.K.1
Kuyper, T.W.2
Mes, T.H.M.3
Hoekstra, R.F.4
-
6
-
-
0000085341
-
The late Cretaceous and Cenozoic history of vegetation and climate at northern and southern high latitudes: a comparison
-
National Research Council, eds. National Academy Press, Washington
-
Askin, R. A., and R. A. Spicer 1995. The late Cretaceous and Cenozoic history of vegetation and climate at northern and southern high latitudes: a comparison. Pp. 156-170 in National Research Council, eds. Effects of past global change on life. National Academy Press, Washington
-
(1995)
Effects of past global change on life
, pp. 156-170
-
-
Askin, R.A.1
Spicer, R.A.2
-
7
-
-
77955991477
-
The age and diversification of the angiosperms re-revisited
-
Bell, C. D., D. E. Soltis, and P. S. Soltis 2010. The age and diversification of the angiosperms re-revisited. Am. J. Bot. 97:1296-1303.
-
(2010)
Am. J. Bot.
, vol.97
, pp. 1296-1303
-
-
Bell, C.D.1
Soltis, D.E.2
Soltis, P.S.3
-
8
-
-
58149185141
-
GenBank
-
Benson, D. A., I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and E. W. Sayers 2009. GenBank. Nucleic Acids Res. 37:D26-D31.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
9
-
-
0027883238
-
Dating the evolutionary radiations of the true fungi
-
Berbee, M. L., and J. W. Taylor 1993. Dating the evolutionary radiations of the true fungi. Can. J. Bot. 71:1114-1127.
-
(1993)
Can. J. Bot.
, vol.71
, pp. 1114-1127
-
-
Berbee, M.L.1
Taylor, J.W.2
-
10
-
-
0001225414
-
Fungal molecular evolution: gene trees and geologic time
-
D. McLaughlin, E. McLaughlin, and P. Lemke, eds. Springer-Verlag, Berlin
-
Berbee, M. L., and J. W. Taylor 2001. Fungal molecular evolution: gene trees and geologic time. Pp. 229-245 in D. McLaughlin, E. McLaughlin, and P. Lemke, eds. The Mycota VII Part B: systematics and evolution. Springer-Verlag, Berlin
-
(2001)
The Mycota VII Part B: systematics and evolution
, pp. 229-245
-
-
Berbee, M.L.1
Taylor, J.W.2
-
11
-
-
51249125106
-
Bayesian estimation of speciation and extinction probabilities from (in)complete phylogenies
-
Bokma, F. 2008. Bayesian estimation of speciation and extinction probabilities from (in)complete phylogenies. Evolution 62:2441-2445.
-
(2008)
Evolution
, vol.62
, pp. 2441-2445
-
-
Bokma, F.1
-
12
-
-
0000320606
-
Delimitation of Hymenogaster sensu stricto and four new segregate genera
-
Bougher, N. L., and M. A. Castellano 1993. Delimitation of Hymenogaster sensu stricto and four new segregate genera. Mycologia 85:273-293.
-
(1993)
Mycologia
, vol.85
, pp. 273-293
-
-
Bougher, N.L.1
Castellano, M.A.2
-
13
-
-
33746062492
-
A molecular phylogeny of Hebeloma species from Europe
-
Boyle, H., B. Zimdars, C. Renker, and F. Buscot 2006. A molecular phylogeny of Hebeloma species from Europe. Mycol. Res. 110:369-380.
-
(2006)
Mycol. Res.
, vol.110
, pp. 369-380
-
-
Boyle, H.1
Zimdars, B.2
Renker, C.3
Buscot, F.4
-
14
-
-
8644249174
-
Evolutionary studies of ectomycorrhizal fungi: milestones and future directions
-
Bruns, T. D., and R. P. Shefferson 2004. Evolutionary studies of ectomycorrhizal fungi: milestones and future directions. Can. J. Bot. 82:1122-1132.
-
(2004)
Can. J. Bot.
, vol.82
, pp. 1122-1132
-
-
Bruns, T.D.1
Shefferson, R.P.2
-
15
-
-
7144226573
-
A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis
-
Bruns, T. D., T. M. Szaro, M. Gardes, K. W. Cullings, J. J. Pan, D. L. Taylor, T. R. Horton, A. Kretzer, M. Garbelotto, and Y. Li 1998. A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis. Mol. Ecol. 7:257-272.
-
(1998)
Mol. Ecol.
, vol.7
, pp. 257-272
-
-
Bruns, T.D.1
Szaro, T.M.2
Gardes, M.3
Cullings, K.W.4
Pan, J.J.5
Taylor, D.L.6
Horton, T.R.7
Kretzer, A.8
Garbelotto, M.9
Li, Y.10
-
16
-
-
78449279363
-
Evolutionary history of the conifer root fungus Heterobasidion annosum sensu lato
-
Dalman, K., Å. Olson, and J. Stenlid 2010. Evolutionary history of the conifer root fungus Heterobasidion annosum sensu lato. Mol. Ecol. 19:4979-4993.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 4979-4993
-
-
Dalman, K.1
Olson, A.2
Stenlid, J.3
-
17
-
-
9144219581
-
The last common ancestor of Sarcolaenaceae and Asian dipterocarp trees was ectomycorrhizal before the India-Madagascar separation, about 88 million years ago
-
Ducousso, M., G. Bena, C. Bourgeois, B. Buyck, G. Eyssartier, M. Vincelette, R. Rabevohitra, L. Randrihasipara, B. Dreyfus, and Y. Prin 2004. The last common ancestor of Sarcolaenaceae and Asian dipterocarp trees was ectomycorrhizal before the India-Madagascar separation, about 88 million years ago. Mol. Ecol. 13:231-236.
-
(2004)
Mol. Ecol.
, vol.13
, pp. 231-236
-
-
Ducousso, M.1
Bena, G.2
Bourgeois, C.3
Buyck, B.4
Eyssartier, G.5
Vincelette, M.6
Rabevohitra, R.7
Randrihasipara, L.8
Dreyfus, B.9
Prin, Y.10
-
18
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond, A. J., and A. Rambaut 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
19
-
-
57749180850
-
Hebeloma species associated with Cistus
-
Eberhardt, U., J. J. Beker, J. Vila, J. Vesterholt, X. Llimona, and R. Gadjieva 2009. Hebeloma species associated with Cistus. Mycol. Res. 113:153-162.
-
(2009)
Mycol. Res.
, vol.113
, pp. 153-162
-
-
Eberhardt, U.1
Beker, J.J.2
Vila, J.3
Vesterholt, J.4
Llimona, X.5
Gadjieva, R.6
-
20
-
-
14244267753
-
Teasing apart molecular- versus fossil-based error estimates when dating phylogenetic trees: a case study in the birch family (Betulaceae)
-
Forest, F., V. Savolainen, M. W. Chase, R. Lupia, A. Bruneau, and P. R. Crane 2005. Teasing apart molecular- versus fossil-based error estimates when dating phylogenetic trees: a case study in the birch family (Betulaceae). Syst. Bot. 30:118-133.
-
(2005)
Syst. Bot.
, vol.30
, pp. 118-133
-
-
Forest, F.1
Savolainen, V.2
Chase, M.W.3
Lupia, R.4
Bruneau, A.5
Crane, P.R.6
-
22
-
-
22144490441
-
Molecular evolution of Agaricus species based on ITS and LSU rDNA sequences
-
Geml, J., D. M. Geiser, and D. J. Royse 2004. Molecular evolution of Agaricus species based on ITS and LSU rDNA sequences. Mycol. Prog. 3:157-176.
-
(2004)
Mycol. Prog.
, vol.3
, pp. 157-176
-
-
Geml, J.1
Geiser, D.M.2
Royse, D.J.3
-
23
-
-
77955243311
-
Mycorrhizal fungi: their habitats and nutritional strategies
-
C. P. Kubicek and I. S. Druzhinina, eds. 2nd edition. Springer-Verlag, Berlin
-
Girlanda, M., S. Perotto, and P. Bonfante 2007. Mycorrhizal fungi: their habitats and nutritional strategies. Pp. 229-256 in C. P. Kubicek and I. S. Druzhinina, eds. The Mycota IV: environmental and microbial relationships. 2nd edition. Springer-Verlag, Berlin
-
(2007)
The Mycota IV: environmental and microbial relationships
, pp. 229-256
-
-
Girlanda, M.1
Perotto, S.2
Bonfante, P.3
-
24
-
-
74549125386
-
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy, M., S. Guindon, and O. Gascuel 2010. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 27:221-224.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
25
-
-
1642554676
-
Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision
-
Graur, D., and W. Martin 2004. Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends Genet. 20:80-86.
-
(2004)
Trends Genet.
, vol.20
, pp. 80-86
-
-
Graur, D.1
Martin, W.2
-
26
-
-
79960072702
-
-
Hansen, L., and H. Knudsen, eds. Nordsvamp, Copenhagen, Polyporales, Boletales, Agaricales, Russulales.
-
Hansen, L., and H. Knudsen, eds. 1992. Nordic Macromycetes. Vol. 2: Polyporales, Boletales, Agaricales, Russulales. Nordsvamp, Copenhagen
-
(1992)
Nordic Macromycetes.
, vol.2
-
-
-
27
-
-
47749095118
-
Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees
-
Heath, T. A., D. J. Zwickl, J. Kim, and D. M. Hillis 2008. Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees. Syst. Biol. 57:160-166.
-
(2008)
Syst. Biol.
, vol.57
, pp. 160-166
-
-
Heath, T.A.1
Zwickl, D.J.2
Kim, J.3
Hillis, D.M.4
-
28
-
-
0035839062
-
Molecular evidence for the early colonization of land by fungi and plants
-
Heckman, D. S., D. M. Geiser, B. R. Eidell, R. L. Strauffer, N. L. Kardos, and S. B. Hedges 2001. Molecular evidence for the early colonization of land by fungi and plants. Science 293:1129-1133.
-
(2001)
Science
, vol.293
, pp. 1129-1133
-
-
Heckman, D.S.1
Geiser, D.M.2
Eidell, B.R.3
Strauffer, R.L.4
Kardos, N.L.5
Hedges, S.B.6
-
29
-
-
0034964598
-
Shiitake mushrooms and molecular clocks: historical biogeography of Lentinula
-
Hibbett, D. S. 2001. Shiitake mushrooms and molecular clocks: historical biogeography of Lentinula. J. Biogeogr. 28:231-241.
-
(2001)
J. Biogeogr.
, vol.28
, pp. 231-241
-
-
Hibbett, D.S.1
-
30
-
-
63449130001
-
The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses
-
Hibbett, D. S., and P. B. Matheny 2009. The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses. BMC Biol. 7:13.
-
(2009)
BMC Biol.
, vol.7
, pp. 13
-
-
Hibbett, D.S.1
Matheny, P.B.2
-
32
-
-
0030865545
-
Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of Homobasidiomycetes
-
Hibbett, D. S., D. Grimaldi, and M. J. Donoghue 1997. Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of Homobasidiomycetes. Am. J. Bot. 84:981-991.
-
(1997)
Am. J. Bot.
, vol.84
, pp. 981-991
-
-
Hibbett, D.S.1
Grimaldi, D.2
Donoghue, M.J.3
-
33
-
-
0141907283
-
Another fossil agaric from Dominican amber
-
Hibbett, D. S., M. Binder, Z. Wang, and Y. Goldman 2003. Another fossil agaric from Dominican amber. Mycologia 95:685-687.
-
(2003)
Mycologia
, vol.95
, pp. 685-687
-
-
Hibbett, D.S.1
Binder, M.2
Wang, Z.3
Goldman, Y.4
-
35
-
-
42149135515
-
Molecular phylogeny and historical biogeography of the genus Tuber, the 'true truffles'
-
Jeandroz, S., C. Murat, Y. Wang, P. Bonfante, and F. Le Tacon 2008. Molecular phylogeny and historical biogeography of the genus Tuber, the 'true truffles'. J. Biogeogr. 35:815-829.
-
(2008)
J. Biogeogr.
, vol.35
, pp. 815-829
-
-
Jeandroz, S.1
Murat, C.2
Wang, Y.3
Bonfante, P.4
Le Tacon, F.5
-
37
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh, T. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinform. 9:286-298.
-
(2008)
Brief. Bioinform.
, vol.9
, pp. 286-298
-
-
Katoh, T.1
-
38
-
-
0003804933
-
-
Kirk, P. M., P. F. Cannon, D. W. Minter, and J. A. Staplers, eds., 10th edition. CAB International, Wallingford
-
Kirk, P. M., P. F. Cannon, D. W. Minter, and J. A. Staplers, eds. 2008. Dictionary of the fungi, 10th edition. CAB International, Wallingford
-
(2008)
Dictionary of the fungi
-
-
-
39
-
-
0001337578
-
Searching for evolutionary patterns in the shape of a phylogenetic tree
-
Kirkpatrick, M., and M. Slatkin 1993. Searching for evolutionary patterns in the shape of a phylogenetic tree. Evolution 47:1171-1181.
-
(1993)
Evolution
, vol.47
, pp. 1171-1181
-
-
Kirkpatrick, M.1
Slatkin, M.2
-
40
-
-
70350565769
-
-
Knudsen, H., and J. Vesterholt, eds. Nordsvamp, Copenhagen
-
Knudsen, H., and J. Vesterholt, eds. 2008. Funga Nordica: Agaricoid, boletoid and cyphelloid genera. Nordsvamp, Copenhagen
-
(2008)
Funga Nordica: Agaricoid, boletoid and cyphelloid genera
-
-
-
41
-
-
78651242896
-
Oldest fossil basidiomycete clamp connections
-
Krings, M., N. Dotzler, J. Galtier, and T. N. Taylor 2011. Oldest fossil basidiomycete clamp connections. Mycoscience 52:18-23.
-
(2011)
Mycoscience
, vol.52
, pp. 18-23
-
-
Krings, M.1
Dotzler, N.2
Galtier, J.3
Taylor, T.N.4
-
42
-
-
84879612433
-
The evolution, biogeography and palaeoecology of the Pinaceae based on fossil and extant representatives
-
LePage, B. A. 2003. The evolution, biogeography and palaeoecology of the Pinaceae based on fossil and extant representatives. Acta Hort. 615:29-52.
-
(2003)
Acta Hort.
, vol.615
, pp. 29-52
-
-
LePage, B.A.1
-
43
-
-
0030620412
-
Fossil ectomycorrhizae from the middle Eocene
-
LePage, B. A., R. S. Currah, R. A. Stockey, and G. W. Rothwell 1997. Fossil ectomycorrhizae from the middle Eocene. Am. J. Bot. 84:410-412.
-
(1997)
Am. J. Bot.
, vol.84
, pp. 410-412
-
-
LePage, B.A.1
Currah, R.S.2
Stockey, R.A.3
Rothwell, G.W.4
-
44
-
-
67649240664
-
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees
-
Liu, K., S. Raghavan, S. Nelesen, C. R. Linder, and T. Warnow 2009. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science 324:1561-1564.
-
(2009)
Science
, vol.324
, pp. 1561-1564
-
-
Liu, K.1
Raghavan, S.2
Nelesen, S.3
Linder, C.R.4
Warnow, T.5
-
45
-
-
79960054531
-
-
Mesquite: a modular system for evolutionary analysis. Version 2.71 Available at
-
Maddison, W. P., and D. R. Maddison 2009. Mesquite: a modular system for evolutionary analysis. Version 2.71 Available at
-
(2009)
-
-
Maddison, W.P.1
Maddison, D.R.2
-
46
-
-
77953773178
-
Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of Angiosperms
-
Magallón, S. 2010. Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of Angiosperms. Syst. Biol. 59:384-399.
-
(2010)
Syst. Biol.
, vol.59
, pp. 384-399
-
-
Magallón, S.1
-
47
-
-
0034765180
-
Absolute diversification rates in Angiosperm clades
-
Magallón, S., and M. J. Sanderson 2001. Absolute diversification rates in Angiosperm clades. Evolution 55:1762-1780.
-
(2001)
Evolution
, vol.55
, pp. 1762-1780
-
-
Magallón, S.1
Sanderson, M.J.2
-
48
-
-
0001495563
-
Ecological and evolutionary significance of mycorrhizal symbioses in vascular plants (a review)
-
Malloch, D. W., K. A. Pirozynski, and P. H. Raven 1980. Ecological and evolutionary significance of mycorrhizal symbioses in vascular plants (a review). Proc. Natl. Acad. Sci. USA 77:2113-2118.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 2113-2118
-
-
Malloch, D.W.1
Pirozynski, K.A.2
Raven, P.H.3
-
49
-
-
33846463086
-
The new genus Auritella from Africa and Australia (Inocybaceae, Agaricales): molecular systematics, taxonomy and historical biogeography
-
Matheny, P. B., and N. L. Bougher 2006. The new genus Auritella from Africa and Australia (Inocybaceae, Agaricales): molecular systematics, taxonomy and historical biogeography. Mycol. Prog. 5:2-17.
-
(2006)
Mycol. Prog.
, vol.5
, pp. 2-17
-
-
Matheny, P.B.1
Bougher, N.L.2
-
50
-
-
34247562964
-
Major clades of Agaricales: a multilocus phylogenetic overview
-
Matheny, P. B., J. M. Curtis, V. Hofstetter, M. C. Aime, J.-M. Moncalvo, Z.-W. Ge, Z.-L. Yang, J. C. Slot, J. F. Ammirati, T. J. Baroni, et al. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982-995.
-
(2006)
Mycologia
, vol.98
, pp. 982-995
-
-
Matheny, P.B.1
Curtis, J.M.2
Hofstetter, V.3
Aime, M.C.4
Moncalvo, J.-M.5
Ge, Z.-W.6
Yang, Z.-L.7
Slot, J.C.8
Ammirati, J.F.9
Baroni, T.J.10
-
51
-
-
34248184653
-
Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
-
Matheny, P. B., Z. Wang, M. Binder, J. M. Curtis, Y. W. Lim, R. H. Nilsson, K. W. Hughes, V. Hofstetter, J. F. Ammarati, C. L. Schoch, et al. 2007. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol. Phylogenet. Evol. 43:430-451.
-
(2007)
Mol. Phylogenet. Evol.
, vol.43
, pp. 430-451
-
-
Matheny, P.B.1
Wang, Z.2
Binder, M.3
Curtis, J.M.4
Lim, Y.W.5
Nilsson, R.H.6
Hughes, K.W.7
Hofstetter, V.8
Ammarati, J.F.9
Schoch, C.L.10
-
52
-
-
62149119183
-
Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae
-
Matheny, P. B., M. C. Aime, N. L. Bougher, B. Buyck, D. J. Desjardin, E. Horak, B. R. Kropp, D. J. Lodge, K. Soytong, J. M. Trappe, et al. 2009. Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. J. Biogeogr. 36:577-592.
-
(2009)
J. Biogeogr.
, vol.36
, pp. 577-592
-
-
Matheny, P.B.1
Aime, M.C.2
Bougher, N.L.3
Buyck, B.4
Desjardin, D.J.5
Horak, E.6
Kropp, B.R.7
Lodge, D.J.8
Soytong, K.9
Trappe, J.M.10
-
53
-
-
56849086553
-
The ecological dynamics of clade diversification and community assembly
-
McPeek, M. A. 2008. The ecological dynamics of clade diversification and community assembly. Am. Nat. 172:E270-E284.
-
(2008)
Am. Nat.
, vol.172
-
-
McPeek, M.A.1
-
54
-
-
0032887385
-
Using phylogenies to test macroevolutionary hypotheses of trait evolution in cranes (Gruinae)
-
Mooers, A. Ø., S. M. Vamosi, and D. Schluter 1999. Using phylogenies to test macroevolutionary hypotheses of trait evolution in cranes (Gruinae). Am. Nat. 154:249-259.
-
(1999)
Am. Nat.
, vol.154
, pp. 249-259
-
-
Mooers, A.1
Vamosi, S.M.2
Schluter, D.3
-
55
-
-
30944460552
-
A nomenclatural revision of the genus Alnicola (Cortinariaceae)
-
Moreau, P.-A. 2005. A nomenclatural revision of the genus Alnicola (Cortinariaceae). Fungal Divers. 20:121-155.
-
(2005)
Fungal Divers.
, vol.20
, pp. 121-155
-
-
Moreau, P.-A.1
-
56
-
-
33244480108
-
Phylogeny of the ectomycorrhizal mushroom genus Alnicola (Basidiomycota, Cortinariaceae) based on rDNA sequences with special emphasis on host specificity and morphological characters
-
Moreau, P.-A., U. Peintner, and M. Gardes 2006. Phylogeny of the ectomycorrhizal mushroom genus Alnicola (Basidiomycota, Cortinariaceae) based on rDNA sequences with special emphasis on host specificity and morphological characters. Mol. Phylogenet. Evol. 38:794-807.
-
(2006)
Mol. Phylogenet. Evol.
, vol.38
, pp. 794-807
-
-
Moreau, P.-A.1
Peintner, U.2
Gardes, M.3
-
57
-
-
33750626563
-
Pakaraimaea dipterocarpacea is ectomycorrhizal, indicating an ancient Godwanaland origin for the ectomycorrhizal habit in Dipterocarpaceae
-
Moyersoen, B. 2006. Pakaraimaea dipterocarpacea is ectomycorrhizal, indicating an ancient Godwanaland origin for the ectomycorrhizal habit in Dipterocarpaceae. New Phytol. 172:753-762.
-
(2006)
New Phytol.
, vol.172
, pp. 753-762
-
-
Moyersoen, B.1
-
58
-
-
0026756206
-
Tempo and mode of evolution revealed from molecular phylogenies
-
Nee, S., A. Mooers, and P. H. Harvey 1992. Tempo and mode of evolution revealed from molecular phylogenies. Proc. Natl. Acad. Sci. USA 89:8322-8326.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 8322-8326
-
-
Nee, S.1
Mooers, A.2
Harvey, P.H.3
-
59
-
-
0028585282
-
Extinction rates can be estimated from molecular phylogenies
-
Nee, S., E. C. Holmes, R. M. May, and P. H. Harvey 1994a. Extinction rates can be estimated from molecular phylogenies. Philos. Trans. R. Soc. Lond. B 344:77-82.
-
(1994)
Philos. Trans. R. Soc. Lond. B
, vol.344
, pp. 77-82
-
-
Nee, S.1
Holmes, E.C.2
May, R.M.3
Harvey, P.H.4
-
61
-
-
0034997128
-
Inferring speciation rates from phylogenies
-
Nee, S. 2001. Inferring speciation rates from phylogenies. Evolution 55:661-668.
-
(2001)
Evolution
, vol.55
, pp. 661-668
-
-
Nee, S.1
-
63
-
-
25644460009
-
Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi
-
Nilsson, R. H., E. Kristiansson, M. Ryberg, and K.-H. Larsson 2005. Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi. BMC Bioinformatics 6:178.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 178
-
-
Nilsson, R.H.1
Kristiansson, E.2
Ryberg, M.3
Larsson, K.-H.4
-
64
-
-
79952428465
-
Rethinking taxon sampling in the light of environmental sequencing
-
Nilsson, R. H., M. Ryberg, E. Sjökvist, and K. Abarenkov 2011. Rethinking taxon sampling in the light of environmental sequencing. Cladistics 27:197-203.
-
(2011)
Cladistics
, vol.27
, pp. 197-203
-
-
Nilsson, R.H.1
Ryberg, M.2
Sjökvist, E.3
Abarenkov, K.4
-
66
-
-
39149141072
-
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
-
Nylander, J. A. A., J. C. Wilgenbusch, D. L. Warren, and D. L. Swofford 2008. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24:581-583.
-
(2008)
Bioinformatics
, vol.24
, pp. 581-583
-
-
Nylander, J.A.A.1
Wilgenbusch, J.C.2
Warren, D.L.3
Swofford, D.L.4
-
67
-
-
33646735054
-
Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo
-
Pagel, M., and A. Meade 2006. Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am. Nat. 167:808-825.
-
(2006)
Am. Nat.
, vol.167
, pp. 808-825
-
-
Pagel, M.1
Meade, A.2
-
68
-
-
0000152189
-
Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae)
-
Peintner, U., N. L. Bougher, M. A. Castellano, J.-M. Moncalvo, M. M. Moser, J. M. Trappe, and R. Vilgalys 2001. Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae). Am. J. Bot. 88:2168-2179.
-
(2001)
Am. J. Bot.
, vol.88
, pp. 2168-2179
-
-
Peintner, U.1
Bougher, N.L.2
Castellano, M.A.3
Moncalvo, J.-M.4
Moser, M.M.5
Trappe, J.M.6
Vilgalys, R.7
-
69
-
-
41749120055
-
Density-dependent cladogenesis in birds
-
Phillimore, A. B., and T. D. Price 2008. Density-dependent cladogenesis in birds. PLoS Biol. 6:e71.
-
(2008)
PLoS Biol.
, vol.6
-
-
Phillimore, A.B.1
Price, T.D.2
-
70
-
-
34249315101
-
Evidence of mycoparasitism and hypermycoparasitism in Early Cretaceous amber
-
Poinar, G. O., Jr., and R. Buckley 2007. Evidence of mycoparasitism and hypermycoparasitism in Early Cretaceous amber. Mycol. Res. 111:503-506.
-
(2007)
Mycol. Res.
, vol.111
, pp. 503-506
-
-
Poinar Jr, G.O.1
Buckley, R.2
-
71
-
-
0025243260
-
Upper Eocene gilled mushroom from the Dominican Republic
-
Poinar, G. O., Jr., and R. Singer 1990. Upper Eocene gilled mushroom from the Dominican Republic. Science 248:1099-1101.
-
(1990)
Science
, vol.248
, pp. 1099-1101
-
-
Poinar Jr, G.O.1
Singer, R.2
-
73
-
-
0028999420
-
Macroevolutionary inference from primate phylogeny
-
Purvis, A., S. Nee, and P. H. Harvey 1995. Macroevolutionary inference from primate phylogeny. Proc. R. Soc. Lond. B 260:329-333.
-
(1995)
Proc. R. Soc. Lond. B
, vol.260
, pp. 329-333
-
-
Purvis, A.1
Nee, S.2
Harvey, P.H.3
-
74
-
-
0034703844
-
Testing macro-evolutionary models using incomplete molecular phylogenies
-
Pybus, O. G., and P. H. Harvey 2000. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc. R. Soc. Lond. B 267:2267-2272.
-
(2000)
Proc. R. Soc. Lond. B
, vol.267
, pp. 2267-2272
-
-
Pybus, O.G.1
Harvey, P.H.2
-
75
-
-
70149113077
-
-
R Development Core Team. R Foundation for Statistical Computing, Vienna
-
R Development Core Team. 2009. R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna
-
(2009)
R: a Language and Environment for Statistical Computing
-
-
-
76
-
-
33748559495
-
Likelihood methods for detecting temporal shifts in diversification rates
-
Rabosky, D. L. 2006a. Likelihood methods for detecting temporal shifts in diversification rates. Evolution 60:1152-1164.
-
(2006)
Evolution
, vol.60
, pp. 1152-1164
-
-
Rabosky, D.L.1
-
77
-
-
85129154611
-
LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies
-
Rabosky, D. L. 2006b. LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies. Evol. Bioinform. Online 2:247-250.
-
(2006)
Evol. Bioinform. Online
, vol.2
, pp. 247-250
-
-
Rabosky, D.L.1
-
78
-
-
77953910538
-
Extinction rates should not be estimated from molecular phylogenies
-
Rabosky, D. L. 2010. Extinction rates should not be estimated from molecular phylogenies. Evolution 64:1816-1824.
-
(2010)
Evolution
, vol.64
, pp. 1816-1824
-
-
Rabosky, D.L.1
-
79
-
-
47749105699
-
Explosive evolutionary radiations: decreasing speciation or increasing extinction through time?
-
Rabosky, D. L., and I. J. Lovette 2008. Explosive evolutionary radiations: decreasing speciation or increasing extinction through time? Evolution 62:1866-1875.
-
(2008)
Evolution
, vol.62
, pp. 1866-1875
-
-
Rabosky, D.L.1
Lovette, I.J.2
-
80
-
-
79960049768
-
-
Tracer v1.4, Available from
-
Rambaut, A., and A. J. Drummond 2007. Tracer v1.4, Available from
-
(2007)
-
-
Rambaut, A.1
Drummond, A.J.2
-
81
-
-
67249107923
-
A likelihood look at the supermatrix-supertree controversy
-
Ren, F., H. Tanaka, and Z. Yang 2009. A likelihood look at the supermatrix-supertree controversy. Gene 441:119-125.
-
(2009)
Gene
, vol.441
, pp. 119-125
-
-
Ren, F.1
Tanaka, H.2
Yang, Z.3
-
82
-
-
27644548127
-
Relaxed molecular clocks for dating historical plant dispersal events
-
Renner, S. S. 2005. Relaxed molecular clocks for dating historical plant dispersal events. Trends Plant Sci. 10:550-558.
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 550-558
-
-
Renner, S.S.1
-
83
-
-
76549104049
-
Evolutionary diversification, coevolution between populations and their antagonists, and the filling of niche space
-
Ricklefs, R. E. 2010. Evolutionary diversification, coevolution between populations and their antagonists, and the filling of niche space. Proc. Natl. Acad. Sci. USA 107:1265-1272.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 1265-1272
-
-
Ricklefs, R.E.1
-
84
-
-
65249118770
-
Ectomycorrhizal fungal diversity: separting the wheat from the chaff
-
Rinaldi, A. C., O. Comandini, and T. W. Kuyper 2008. Ectomycorrhizal fungal diversity: separting the wheat from the chaff. Fungal Divers. 33:1-45.
-
(2008)
Fungal Divers.
, vol.33
, pp. 1-45
-
-
Rinaldi, A.C.1
Comandini, O.2
Kuyper, T.W.3
-
85
-
-
19544378297
-
Rapid cladogenesis in marine fishes revisited
-
Rüber, L., and R. Zardoya 2005. Rapid cladogenesis in marine fishes revisited. Evolution 59:1119-1127.
-
(2005)
Evolution
, vol.59
, pp. 1119-1127
-
-
Rüber, L.1
Zardoya, R.2
-
86
-
-
57649143377
-
An outlook on the fungal ITS sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity
-
Ryberg, M., E. Kristiansson, E. Sjökvist, and R. H. Nilsson 2009. An outlook on the fungal ITS sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity. New Phytol. 181:471-477.
-
(2009)
New Phytol.
, vol.181
, pp. 471-477
-
-
Ryberg, M.1
Kristiansson, E.2
Sjökvist, E.3
Nilsson, R.H.4
-
87
-
-
77950056561
-
An evolutionary perspective on morphological and ecological characters in the mushroom forming family Inocybaceae (Agaricomycotina, Fungi)
-
Ryberg, M., E. Larsson, and S. Jacobsson 2010. An evolutionary perspective on morphological and ecological characters in the mushroom forming family Inocybaceae (Agaricomycotina, Fungi). Mol. Phylogenet. Evol. 55:431-442.
-
(2010)
Mol. Phylogenet. Evol.
, vol.55
, pp. 431-442
-
-
Ryberg, M.1
Larsson, E.2
Jacobsson, S.3
-
89
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
90
-
-
9744246862
-
Estimation of molecular clocks for ITS and 28S rDNA in Erysiphales
-
Takamatsu, S., and S. Matsuda 2004. Estimation of molecular clocks for ITS and 28S rDNA in Erysiphales. Mycoscience 45:340-344.
-
(2004)
Mycoscience
, vol.45
, pp. 340-344
-
-
Takamatsu, S.1
Matsuda, S.2
-
92
-
-
72849151143
-
Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages
-
Tedersoo, L., T. W. May, and S. E. Smith 2010. Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages. Mycorrhiza 20:217-263.
-
(2010)
Mycorrhiza
, vol.20
, pp. 217-263
-
-
Tedersoo, L.1
May, T.W.2
Smith, S.E.3
-
93
-
-
0036250459
-
Anamika, a new mycorrhizal genus of Cortinariaceae from India and its phylogenetic position based on ITS and LSU sequences
-
Thomas, K. A., U. Peintner, M. M. Moser, and P. Manimohan 2002. Anamika, a new mycorrhizal genus of Cortinariaceae from India and its phylogenetic position based on ITS and LSU sequences. Mycol. Res. 106:245-251.
-
(2002)
Mycol. Res.
, vol.106
, pp. 245-251
-
-
Thomas, K.A.1
Peintner, U.2
Moser, M.M.3
Manimohan, P.4
-
94
-
-
34147132846
-
Mapping uncertainty and phylogenetic uncertainty in ancestral character state reconstruction: an example in the moss genus Brachytheciastrum
-
Vanderpoorten, A., and B. Goffinet 2006. Mapping uncertainty and phylogenetic uncertainty in ancestral character state reconstruction: an example in the moss genus Brachytheciastrum. Syst. Biol. 55:957-971.
-
(2006)
Syst. Biol.
, vol.55
, pp. 957-971
-
-
Vanderpoorten, A.1
Goffinet, B.2
-
95
-
-
75149189785
-
Phylogenies reveal new interpretation of speciation and the Red Queen
-
Venditti, C., A. Meade, and M. Pagel 2010. Phylogenies reveal new interpretation of speciation and the Red Queen. Nature 463:349-352.
-
(2010)
Nature
, vol.463
, pp. 349-352
-
-
Venditti, C.1
Meade, A.2
Pagel, M.3
-
96
-
-
70350631716
-
Naucoria (Fr.) P. Kumm
-
H. Knudsen and J. Vesterholt, eds. Nordsvamp, Copenhagen
-
Vesterholt, J., and J. Heilmann-Clausen 2008. Naucoria (Fr.) P. Kumm. Pp. 817-822 in H. Knudsen and J. Vesterholt, eds. Funga Nordica, agaricoid, boletoid and cyphelloid genera. Nordsvamp, Copenhagen
-
(2008)
Funga Nordica, agaricoid, boletoid and cyphelloid genera
, pp. 817-822
-
-
Vesterholt, J.1
Heilmann-Clausen, J.2
-
97
-
-
33846551800
-
Molecular taxonomy, origins and evolution of freshwater ascomycetes
-
Vijaykrishna, D., R. Jeewon, and K. D. Hyde 2006. Molecular taxonomy, origins and evolution of freshwater ascomycetes. Fungal Divers. 23:351-390.
-
(2006)
Fungal Divers.
, vol.23
, pp. 351-390
-
-
Vijaykrishna, D.1
Jeewon, R.2
Hyde, K.D.3
-
98
-
-
33746080839
-
Phylogenetic distribution and evolution of mycorrhizas in land plants
-
Wang, B., and Y.-L. Qiu 2006. Phylogenetic distribution and evolution of mycorrhizas in land plants. Mycorrhiza 16:299-363.
-
(2006)
Mycorrhiza
, vol.16
, pp. 299-363
-
-
Wang, B.1
Qiu, Y.-L.2
-
99
-
-
0034022645
-
Phylogeny and divergence times in Pinaceae: evidence from three genomes
-
Wang, X.-Q., D. C. Tank, and T. Sang 2000. Phylogeny and divergence times in Pinaceae: evidence from three genomes. Mol. Biol. Evol. 17:773-781.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 773-781
-
-
Wang, X.-Q.1
Tank, D.C.2
Sang, T.3
-
100
-
-
79251508346
-
Estimating diversification rates: how useful are divergence times?
-
Wertheim, J. O., and M. J. Sanderson 2011. Estimating diversification rates: how useful are divergence times? Evolution 65:309-320.
-
(2011)
Evolution
, vol.65
, pp. 309-320
-
-
Wertheim, J.O.1
Sanderson, M.J.2
-
102
-
-
26244462195
-
New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences
-
Yang, Z. L., P. B. Matheny, Z.-W. Ge, J. C. Slot, and D. S. Hibbett 2005. New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences. Mycol. Res. 109:1259-1267.
-
(2005)
Mycol. Res.
, vol.109
, pp. 1259-1267
-
-
Yang, Z.L.1
Matheny, P.B.2
Ge, Z.-W.3
Slot, J.C.4
Hibbett, D.S.5
-
103
-
-
0001778604
-
A mathematical theory of evolution, based on the conclusions of Dr. J.C. Willis, F.R.S. Philos
-
Yule, G. U. 1924. A mathematical theory of evolution, based on the conclusions of Dr. J.C. Willis, F.R.S. Philos. Trans. R. Soc. Lond. B 213:21-87.
-
(1924)
Trans. R. Soc. Lond. B
, vol.213
, pp. 21-87
-
-
Yule, G.U.1
-
104
-
-
0035957736
-
Trends, rhythms, and aberrations in global climate 65 Ma to present
-
Zachos, J., M. Pagani, L. Sloan, E. Thomas, and K. Billup 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292:686-692.
-
(2001)
Science
, vol.292
, pp. 686-692
-
-
Zachos, J.1
Pagani, M.2
Sloan, L.3
Thomas, E.4
Billup, K.5
|